[384] | 1 | #include "particles.h" |
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[8] | 2 | |
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[283] | 3 | namespace bdm { |
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[8] | 4 | |
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| 5 | using std::endl; |
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| 6 | |
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[665] | 7 | void PF::bayes_gensmp(const vec &ut){ |
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| 8 | if (ut.length()>0){ |
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| 9 | vec cond(par->dimensionc()); |
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| 10 | cond.set_subvector(par->dimension(),ut); |
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| 11 | #pragma parallel for |
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| 12 | for (int i = 0; i < n; i++ ) { |
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| 13 | cond.set_subvector(0,_samples ( i )); |
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| 14 | _samples ( i ) = par->samplecond ( cond ); |
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| 15 | lls(i) = 0; |
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| 16 | } |
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| 17 | } else { |
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| 18 | #pragma parallel for |
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| 19 | for (int i = 0; i < n; i++ ) { |
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| 20 | _samples ( i ) = par->samplecond ( _samples ( i ) ); |
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| 21 | lls(i) = 0; |
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| 22 | } |
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[11] | 23 | } |
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[638] | 24 | } |
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[11] | 25 | |
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[638] | 26 | void PF::bayes_weights(){ |
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| 27 | // |
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| 28 | double mlls=max(lls); |
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[32] | 29 | // compute weights |
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[638] | 30 | for (int i = 0; i < n; i++ ) { |
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[32] | 31 | _w ( i ) *= exp ( lls ( i ) - mlls ); // multiply w by likelihood |
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[11] | 32 | } |
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| 33 | |
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[32] | 34 | //renormalize |
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[638] | 35 | double sw=sum(_w); |
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[663] | 36 | if (!std::isfinite(sw)) { |
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[638] | 37 | for (int i=0;i<n;i++){ |
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[663] | 38 | if (!std::isfinite(_w(i))) {_w(i)=0;} |
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[638] | 39 | } |
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| 40 | sw = sum(_w); |
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[665] | 41 | if (!std::isfinite(sw) || sw==0.0) { |
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[638] | 42 | bdm_error("Particle filter is lost; no particle is good enough."); |
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| 43 | } |
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| 44 | } |
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| 45 | _w /= sw; |
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| 46 | } |
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| 47 | |
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[679] | 48 | void PF::bayes( const vec &yt, const vec &cond ) { |
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| 49 | const vec &ut=cond; //todo |
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[665] | 50 | |
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[638] | 51 | int i; |
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| 52 | // generate samples - time step |
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[665] | 53 | bayes_gensmp(ut); |
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[638] | 54 | // weight them - data step |
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[477] | 55 | for ( i = 0; i < n; i++ ) { |
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[665] | 56 | lls ( i ) += obs->evallogcond ( yt, _samples ( i ) ); //+= because lls may have something from gensmp! |
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[638] | 57 | } |
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[11] | 58 | |
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[638] | 59 | bayes_weights(); |
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[11] | 60 | |
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[638] | 61 | if (do_resampling()) { |
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| 62 | est.resample ( resmethod); |
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| 63 | } |
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[8] | 64 | |
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| 65 | } |
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| 66 | |
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[283] | 67 | // void PF::set_est ( const epdf &epdf0 ) { |
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| 68 | // int i; |
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[477] | 69 | // |
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[283] | 70 | // for ( i=0;i<n;i++ ) { |
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| 71 | // _samples ( i ) = epdf0.sample(); |
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| 72 | // } |
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| 73 | // } |
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[8] | 74 | |
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[679] | 75 | void MPF::bayes ( const vec &yt, const vec &cond ) { |
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[665] | 76 | // follows PF::bayes in most places!!! |
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[638] | 77 | int i; |
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| 78 | int n=pf->__w().length(); |
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| 79 | vec &lls = pf->_lls(); |
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| 80 | |
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| 81 | // generate samples - time step |
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[665] | 82 | pf->bayes_gensmp(vec(0)); |
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[638] | 83 | // weight them - data step |
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| 84 | #pragma parallel for |
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| 85 | for ( i = 0; i < n; i++ ) { |
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[679] | 86 | BMs(i) -> bayes(this2bm.pushdown(yt), this2bm.get_cond(yt,cond)); |
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[638] | 87 | lls ( i ) += BMs(i)->_ll(); |
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| 88 | } |
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[32] | 89 | |
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[638] | 90 | pf->bayes_weights(); |
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| 91 | |
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| 92 | ivec ind; |
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| 93 | if (pf->do_resampling()) { |
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| 94 | pf->resample ( ind); |
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| 95 | |
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| 96 | #pragma omp parallel for |
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| 97 | for ( i = 0; i < n; i++ ) { |
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| 98 | if ( ind ( i ) != i ) {//replace the current Bm by a new one |
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| 99 | delete BMs ( i ); |
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| 100 | BMs ( i ) = BMs ( ind ( i ) )->_copy_(); //copy constructor |
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| 101 | } |
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| 102 | }; |
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| 103 | } |
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| 104 | }; |
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| 105 | |
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| 106 | |
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[254] | 107 | } |
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[32] | 108 | //MPF::MPF:{} |
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