/*! \file \brief Probability distributions for Mixtures of pdfs \author Vaclav Smidl. ----------------------------------- BDM++ - C++ library for Bayesian Decision Making under Uncertainty Using IT++ for numerical operations ----------------------------------- */ #ifndef EMIX_H #define EMIX_H #define LOG2 0.69314718055995 #include "../shared_ptr.h" #include "exp_family.h" namespace bdm { //this comes first because it is used inside emix! /*! \brief Class representing ratio of two densities which arise e.g. by applying the Bayes rule. It represents density in the form: \f[ f(rv|rvc) = \frac{f(rv,rvc)}{f(rvc)} \f] where \f$ f(rvc) = \int f(rv,rvc) d\ rv \f$. In particular this type of arise by conditioning of a mixture model. At present the only supported operation is evallogcond(). */ class mratio: public pdf { protected: //! Nominator in the form of pdf const epdf* nom; //!Denominator in the form of epdf shared_ptr den; //!flag for destructor bool destroynom; //!datalink between conditional and nom datalink_m2e dl; public: //!Default constructor. By default, the given epdf is not copied! //! It is assumed that this function will be used only temporarily. mratio ( const epdf* nom0, const RV &rv, bool copy = false ) : pdf ( ), dl ( ) { // adjust rv and rvc set_rv ( rv ); // TODO co kdyby tohle samo uz nastavovalo dimension?!?! dim = rv._dsize(); rvc = nom0->_rv().subt ( rv ); dimc = rvc._dsize(); //prepare data structures if ( copy ) { bdm_error ( "todo" ); // destroynom = true; } else { nom = nom0; destroynom = false; } bdm_assert_debug ( rvc.length() > 0, "Makes no sense to use this object!" ); // build denominator den = nom->marginal ( rvc ); dl.set_connection ( rv, rvc, nom0->_rv() ); }; double evallogcond ( const vec &val, const vec &cond ) { double tmp; vec nom_val ( dimension() + dimc ); dl.pushup_cond ( nom_val, val, cond ); tmp = exp ( nom->evallog ( nom_val ) - den->evallog ( cond ) ); return tmp; } //! Object takes ownership of nom and will destroy it void ownnom() { destroynom = true; } //! Default destructor ~mratio() { if ( destroynom ) { delete nom; } } private: // not implemented mratio ( const mratio & ); mratio &operator= ( const mratio & ); }; /*! * \brief Mixture of epdfs Density function: \f[ f(x) = \sum_{i=1}^{n} w_{i} f_i(x), \quad \sum_{i=1}^n w_i = 1. \f] where \f$f_i(x)\f$ is any density on random variable \f$x\f$, called \a component, */ class emix : public epdf { protected: //! weights of the components vec w; //! Component (epdfs) Array > Coms; public: //! Default constructor emix ( ) : epdf ( ) { } /*! \brief Set weights \c w and components \c Coms Shared pointers in Coms are kept inside this instance and shouldn't be modified after being passed to this method. */ void set_parameters ( const vec &w, const Array > &Coms ); virtual void validate (); vec sample() const; vec mean() const; vec variance() const; double evallog ( const vec &val ) const; vec evallog_mat ( const mat &Val ) const; //! Auxiliary function that returns pdflog for each component mat evallog_coms ( const mat &Val ) const; shared_ptr marginal ( const RV &rv ) const; //! Update already existing marginal density \c target void marginal ( const RV &rv, emix &target ) const; shared_ptr condition ( const RV &rv ) const; //Access methods //! returns a pointer to the internal mean value. Use with Care! vec& _w() { return w; } //!access function shared_ptr _Coms ( int i ) { return Coms ( i ); } void set_rv ( const RV &rv ) { epdf::set_rv ( rv ); for ( int i = 0; i < Coms.length(); i++ ) { Coms ( i )->set_rv ( rv ); } } //! Load from structure with elements: //! \code //! { class='emix'; //! pdfs = (..., ...); // list of pdfs in the mixture //! weights = ( 0.5, 0.5 ); // weights of pdfs in the mixture //! } //! \endcode //!@} void from_setting ( const Setting &set ) { vec w0; Array > Coms0; UI::get ( Coms0, set, "pdfs", UI::compulsory ); if ( !UI::get ( w0, set, "weights", UI::optional ) ) { int len = Coms.length(); w0.set_length ( len ); w0 = 1.0 / len; } // TODO asi lze nacitat primocare do w a coms, jen co bude hotovy validate() set_parameters ( w0, Coms0 ); validate(); } }; SHAREDPTR ( emix ); UIREGISTER ( emix ); /*! * \brief Mixture of egiws */ class egiwmix : public egiw { protected: //! weights of the components vec w; //! Component (epdfs) Array Coms; //!Flag if owning Coms bool destroyComs; public: //!Default constructor egiwmix ( ) : egiw ( ) {}; //! Set weights \c w and components \c Coms //!By default Coms are copied inside. Parameter \c copy can be set to false if Coms live externally. Use method ownComs() if Coms should be destroyed by the destructor. void set_parameters ( const vec &w, const Array &Coms, bool copy = false ); //!return expected value vec mean() const; //!return a sample from the density vec sample() const; //!return the expected variance vec variance() const; // TODO!!! Defined to follow ANSI and/or for future development void mean_mat ( mat &M, mat&R ) const {}; double evallog_nn ( const vec &val ) const { return 0; }; double lognc () const { return 0; } shared_ptr marginal ( const RV &rv ) const; //! marginal density update void marginal ( const RV &rv, emix &target ) const; //Access methods //! returns a pointer to the internal mean value. Use with Care! vec& _w() { return w; } virtual ~egiwmix() { if ( destroyComs ) { for ( int i = 0; i < Coms.length(); i++ ) { delete Coms ( i ); } } } //! Auxiliary function for taking ownership of the Coms() void ownComs() { destroyComs = true; } //!access function egiw* _Coms ( int i ) { return Coms ( i ); } void set_rv ( const RV &rv ) { egiw::set_rv ( rv ); for ( int i = 0; i < Coms.length(); i++ ) { Coms ( i )->set_rv ( rv ); } } //! Approximation of a GiW mix by a single GiW pdf egiw* approx(); }; /*! \brief Chain rule decomposition of epdf Probability density in the form of Chain-rule decomposition: \[ f(x_1,x_2,x_3) = f(x_1|x_2,x_3)f(x_2,x_3)f(x_3) \] Note that */ class mprod: public pdf { private: Array > pdfs; //! Data link for each pdfs Array > dls; protected: //! dummy epdf used only as storage for RV and dim epdf iepdf; public: //! \brief Default constructor mprod() { } /*!\brief Constructor from list of mFacs */ mprod ( const Array > &mFacs ) { set_elements ( mFacs ); } //! Set internal \c pdfs from given values void set_elements ( const Array > &mFacs ); double evallogcond ( const vec &val, const vec &cond ); vec evallogcond_mat ( const mat &Dt, const vec &cond ); vec evallogcond_mat ( const Array &Dt, const vec &cond ); //TODO smarter... vec samplecond ( const vec &cond ) { //! Ugly hack to help to discover if mpfs are not in proper order. Correct solution = check that explicitely. vec smp = std::numeric_limits::infinity() * ones ( dimension() ); vec smpi; // Hard assumption here!!! We are going backwards, to assure that samples that are needed from smp are already generated! for ( int i = ( pdfs.length() - 1 ); i >= 0; i-- ) { // generate contribution of this pdf smpi = pdfs ( i )->samplecond ( dls ( i )->get_cond ( smp , cond ) ); // copy contribution of this pdf into smp dls ( i )->pushup ( smp, smpi ); } return smp; } //! Load from structure with elements: //! \code //! { class='mprod'; //! pdfs = (..., ...); // list of pdfs in the order of chain rule //! } //! \endcode //!@} void from_setting ( const Setting &set ) { Array > atmp; //temporary Array UI::get ( atmp, set, "pdfs", UI::compulsory ); set_elements ( atmp ); } }; UIREGISTER ( mprod ); SHAREDPTR ( mprod ); //! Product of independent epdfs. For dependent pdfs, use mprod. class eprod: public epdf { protected: //! Components (epdfs) Array epdfs; //! Array of indeces Array dls; public: //! Default constructor eprod () : epdfs ( 0 ), dls ( 0 ) {}; //! Set internal void set_parameters ( const Array &epdfs0, bool named = true ) { epdfs = epdfs0;//.set_length ( epdfs0.length() ); dls.set_length ( epdfs.length() ); bool independent = true; if ( named ) { for ( int i = 0; i < epdfs.length(); i++ ) { independent = rv.add ( epdfs ( i )->_rv() ); bdm_assert_debug ( independent, "eprod:: given components are not independent." ); } dim = rv._dsize(); } else { dim = 0; for ( int i = 0; i < epdfs.length(); i++ ) { dim += epdfs ( i )->dimension(); } } // int cumdim = 0; int dimi = 0; int i; for ( i = 0; i < epdfs.length(); i++ ) { dls ( i ) = new datalink; if ( named ) { dls ( i )->set_connection ( epdfs ( i )->_rv() , rv ); } else { dimi = epdfs ( i )->dimension(); dls ( i )->set_connection ( dimi, dim, linspace ( cumdim, cumdim + dimi - 1 ) ); cumdim += dimi; } } } vec mean() const; vec variance() const; vec sample() const; double evallog ( const vec &val ) const; //!access function const epdf* operator () ( int i ) const { bdm_assert_debug ( i < epdfs.length(), "wrong index" ); return epdfs ( i ); } //!Destructor ~eprod() { for ( int i = 0; i < epdfs.length(); i++ ) { delete dls ( i ); } } }; /*! \brief Mixture of pdfs with constant weights, all pdfs are of equal RV and RVC */ class mmix : public pdf { protected: //! Component (pdfs) Array > Coms; //!weights of the components vec w; public: //!Default constructor mmix() : Coms ( 0 ) { } //! Set weights \c w and components \c R void set_parameters ( const vec &w0, const Array > &Coms0 ) { //!\todo check if all components are OK Coms = Coms0; w = w0; if ( Coms0.length() > 0 ) { set_rv ( Coms ( 0 )->_rv() ); dim = rv._dsize(); set_rvc ( Coms ( 0 )->_rvc() ); dimc = rvc._dsize(); } } double evallogcond ( const vec &dt, const vec &cond ) { double ll = 0.0; for ( int i = 0; i < Coms.length(); i++ ) { ll += Coms ( i )->evallogcond ( dt, cond ); } return ll; } vec samplecond ( const vec &cond ); //! Load from structure with elements: //! \code //! { class='mmix'; //! pdfs = (..., ...); // list of pdfs in the mixture //! weights = ( 0.5, 0.5 ); // weights of pdfs in the mixture //! } //! \endcode //!@} void from_setting ( const Setting &set ) { UI::get ( Coms, set, "pdfs", UI::compulsory ); // TODO ma byt zde, ci ve validate()? if ( Coms.length() > 0 ) { set_rv ( Coms ( 0 )->_rv() ); dim = rv._dsize(); set_rvc ( Coms ( 0 )->_rvc() ); dimc = rvc._dsize(); } if ( !UI::get ( w, set, "weights", UI::optional ) ) { int len = Coms.length(); w.set_length ( len ); w = 1.0 / len; } } }; SHAREDPTR ( mmix ); UIREGISTER ( mmix ); } #endif //MX_H