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| 65 | <h1>bdmbase.h</h1><a href="bdmbase_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 |
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| 66 | <a name="l00013"></a>00013 <span class="preprocessor">#ifndef BDMBASE_H</span> |
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| 67 | <a name="l00014"></a>00014 <span class="preprocessor"></span><span class="preprocessor">#define BDMBASE_H</span> |
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| 68 | <a name="l00015"></a>00015 <span class="preprocessor"></span> |
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| 69 | <a name="l00016"></a>00016 <span class="preprocessor">#include <map></span> |
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| 70 | <a name="l00017"></a>00017 |
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| 71 | <a name="l00018"></a>00018 <span class="preprocessor">#include "../itpp_ext.h"</span> |
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| 72 | <a name="l00019"></a>00019 <span class="preprocessor">#include "../bdmroot.h"</span> |
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[398] | 73 | <a name="l00020"></a>00020 <span class="preprocessor">#include "<a class="code" href="user__info_8h.html" title="UI (user info) class for loading/saving objects from/to configuration files. It is...">user_info.h</a>"</span> |
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[397] | 74 | <a name="l00021"></a>00021 |
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| 75 | <a name="l00022"></a>00022 |
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| 76 | <a name="l00023"></a>00023 <span class="keyword">using namespace </span>libconfig; |
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| 77 | <a name="l00024"></a>00024 <span class="keyword">using namespace </span>itpp; |
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| 78 | <a name="l00025"></a>00025 <span class="keyword">using namespace </span>std; |
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| 79 | <a name="l00026"></a>00026 |
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| 80 | <a name="l00027"></a>00027 <span class="keyword">namespace </span>bdm |
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| 81 | <a name="l00028"></a>00028 { |
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| 82 | <a name="l00029"></a>00029 |
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| 83 | <a name="l00030"></a>00030 <span class="keyword">typedef</span> std::map<string, int> RVmap; |
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| 84 | <a name="l00031"></a>00031 <span class="keyword">extern</span> ivec RV_SIZES; |
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| 85 | <a name="l00032"></a>00032 <span class="keyword">extern</span> Array<string> RV_NAMES; |
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| 86 | <a name="l00033"></a>00033 |
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| 87 | <a name="l00035"></a><a class="code" href="classbdm_1_1str.html">00035</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1str.html" title="Structure of RV (used internally), i.e. expanded RVs - TODO tak proc je ve verejnem...">str</a> |
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| 88 | <a name="l00036"></a>00036 { |
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| 89 | <a name="l00037"></a>00037 <span class="keyword">public</span>: |
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| 90 | <a name="l00039"></a><a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0">00039</a> ivec <a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a>; |
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| 91 | <a name="l00041"></a><a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a">00041</a> ivec <a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a>; |
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| 92 | <a name="l00043"></a><a class="code" href="classbdm_1_1str.html#7c6b9dccc6814d7bd1e8e2208a0d3f3f">00043</a> <a class="code" href="classbdm_1_1str.html#7c6b9dccc6814d7bd1e8e2208a0d3f3f" title="Default constructor.">str</a>(ivec ids0, ivec times0) : <a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a>(ids0), <a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a>(times0) { |
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| 93 | <a name="l00044"></a>00044 it_assert_debug(times0.length() == ids0.length(), <span class="stringliteral">"Incompatible input"</span>); |
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| 94 | <a name="l00045"></a>00045 }; |
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| 95 | <a name="l00046"></a>00046 }; |
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| 96 | <a name="l00047"></a>00047 |
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| 97 | <a name="l00086"></a><a class="code" href="classbdm_1_1RV.html">00086</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
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| 98 | <a name="l00087"></a>00087 { |
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| 99 | <a name="l00088"></a>00088 <span class="keyword">protected</span>: |
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| 100 | <a name="l00090"></a><a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb">00090</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>; |
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| 101 | <a name="l00092"></a><a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385">00092</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>; |
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| 102 | <a name="l00094"></a><a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b">00094</a> ivec <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>; |
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| 103 | <a name="l00096"></a><a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896">00096</a> ivec <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>; |
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| 104 | <a name="l00097"></a>00097 |
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| 105 | <a name="l00098"></a>00098 <span class="keyword">private</span>: |
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| 106 | <a name="l00100"></a>00100 <span class="keywordtype">void</span> init(Array<std::string> in_names, ivec in_sizes, ivec in_times); |
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| 107 | <a name="l00101"></a>00101 <span class="keywordtype">int</span> init(<span class="keyword">const</span> <span class="keywordtype">string</span> &name, <span class="keywordtype">int</span> size); |
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| 108 | <a name="l00102"></a>00102 <span class="keyword">public</span>: |
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| 109 | <a name="l00105"></a>00105 |
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| 110 | <a name="l00107"></a><a class="code" href="classbdm_1_1RV.html#3d93da01a64dab31074b25b7d93e5eae">00107</a> <a class="code" href="classbdm_1_1RV.html#3d93da01a64dab31074b25b7d93e5eae" title="Full constructor.">RV</a>(Array<std::string> in_names, ivec in_sizes, ivec in_times) {init(in_names, in_sizes, in_times);}; |
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| 111 | <a name="l00109"></a><a class="code" href="classbdm_1_1RV.html#5bd1bd9ec51b91578ecc83a6b2398a20">00109</a> <a class="code" href="classbdm_1_1RV.html#5bd1bd9ec51b91578ecc83a6b2398a20" title="Constructor with times=0.">RV</a>(Array<std::string> in_names, ivec in_sizes) {init(in_names, in_sizes, zeros_i(in_names.length()));}; |
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| 112 | <a name="l00111"></a><a class="code" href="classbdm_1_1RV.html#a222dfef569e8f123180d40fde97c1cd">00111</a> <a class="code" href="classbdm_1_1RV.html#a222dfef569e8f123180d40fde97c1cd" title="Constructor with sizes=1, times=0.">RV</a>(Array<std::string> in_names) {init(in_names, ones_i(in_names.length()), zeros_i(in_names.length()));} |
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| 113 | <a name="l00113"></a><a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412">00113</a> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a>() : <a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>(0), <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>(0), <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(0), <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>(0) {}; |
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| 114 | <a name="l00115"></a>00115 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a>(<span class="keywordtype">string</span> name, <span class="keywordtype">int</span> sz, <span class="keywordtype">int</span> tm = 0); |
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| 115 | <a name="l00117"></a>00117 |
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| 116 | <a name="l00120"></a>00120 |
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| 117 | <a name="l00122"></a>00122 <span class="keyword">friend</span> std::ostream &<a class="code" href="classbdm_1_1RV.html#cad6f15535d10437f6690cb4492176a8" title="Printing output e.g. for debugging.">operator<< </a>(std::ostream &os, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv); |
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| 118 | <a name="l00123"></a>00123 <span class="keywordtype">int</span> _dsize()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>;} ; |
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| 119 | <a name="l00125"></a>00125 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#39f9b44752376f07e346579b5ff8cbbd" title="Recount size of the corresponding data vector.">countsize</a>() <span class="keyword">const</span>; |
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| 120 | <a name="l00126"></a>00126 ivec cumsizes() <span class="keyword">const</span>; |
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| 121 | <a name="l00127"></a>00127 <span class="keywordtype">int</span> length()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>;} ; |
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| 122 | <a name="l00128"></a>00128 <span class="keywordtype">int</span> id(<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(at);}; |
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| 123 | <a name="l00129"></a>00129 <span class="keywordtype">int</span> size(<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{<span class="keywordflow">return</span> RV_SIZES(<a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(at));}; |
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| 124 | <a name="l00130"></a>00130 <span class="keywordtype">int</span> time(<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>(at);}; |
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| 125 | <a name="l00131"></a>00131 std::string name(<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{<span class="keywordflow">return</span> RV_NAMES(<a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(at));}; |
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| 126 | <a name="l00132"></a>00132 <span class="keywordtype">void</span> set_time(<span class="keywordtype">int</span> at, <span class="keywordtype">int</span> time0) {<a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>(at) = time0;}; |
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| 127 | <a name="l00134"></a>00134 |
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| 128 | <a name="l00135"></a>00135 <span class="comment">//TODO why not inline and later??</span> |
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| 129 | <a name="l00136"></a>00136 |
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| 130 | <a name="l00139"></a>00139 |
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| 131 | <a name="l00141"></a>00141 ivec <a class="code" href="classbdm_1_1RV.html#1367055b2608ad9d50d01a2da6cec869" title="Find indices of self in another rv,.">findself</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>; |
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| 132 | <a name="l00143"></a>00143 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>; |
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| 133 | <a name="l00145"></a>00145 <span class="keywordtype">bool</span> <span class="keyword">add</span>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2); |
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| 134 | <a name="l00147"></a>00147 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#aec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>; |
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| 135 | <a name="l00149"></a>00149 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indeces ind.">subselect</a>(<span class="keyword">const</span> ivec &ind) <span class="keyword">const</span>; |
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| 136 | <a name="l00151"></a><a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966">00151</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indeces ind.">operator()</a>(<span class="keyword">const</span> ivec &ind)<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indeces ind.">subselect</a>(ind);}; |
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| 137 | <a name="l00153"></a><a class="code" href="classbdm_1_1RV.html#452fb5f7ab1eafe17932bf9f458d0415">00153</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#452fb5f7ab1eafe17932bf9f458d0415" title="Select from data vector starting at di1 to di2.">operator()</a>(<span class="keywordtype">int</span> di1, <span class="keywordtype">int</span> di2)<span class="keyword"> const </span>{ |
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| 138 | <a name="l00154"></a>00154 ivec sz = cumsizes(); |
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| 139 | <a name="l00155"></a>00155 <span class="keywordtype">int</span> i1 = 0; |
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| 140 | <a name="l00156"></a>00156 <span class="keywordflow">while</span> (sz(i1) < di1) i1++; |
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| 141 | <a name="l00157"></a>00157 <span class="keywordtype">int</span> i2 = i1; |
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| 142 | <a name="l00158"></a>00158 <span class="keywordflow">while</span> (sz(i2) < di2) i2++; |
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| 143 | <a name="l00159"></a>00159 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indeces ind.">subselect</a>(linspace(i1, i2)); |
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| 144 | <a name="l00160"></a>00160 }; |
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| 145 | <a name="l00162"></a>00162 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#bd77cb0899f7fba1d0e34396137b7f1f" title="Shift time shifted by delta.">t</a>(<span class="keywordtype">int</span> delta); |
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| 146 | <a name="l00164"></a>00164 |
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| 147 | <a name="l00167"></a>00167 |
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| 148 | <a name="l00169"></a>00169 <a class="code" href="classbdm_1_1str.html" title="Structure of RV (used internally), i.e. expanded RVs - TODO tak proc je ve verejnem...">str</a> <a class="code" href="classbdm_1_1RV.html#8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes TODO to_string..">tostr</a>() <span class="keyword">const</span>; |
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| 149 | <a name="l00172"></a>00172 ivec <a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &crv) <span class="keyword">const</span>; |
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| 150 | <a name="l00175"></a>00175 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv2, ivec &selfi, ivec &rv2i) <span class="keyword">const</span>; |
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| 151 | <a name="l00177"></a><a class="code" href="classbdm_1_1RV.html#9a5c5aeeaf39299d07763377b05a8241">00177</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> min(<a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>);}; |
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| 152 | <a name="l00179"></a>00179 |
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| 153 | <a name="l00180"></a>00180 <span class="comment">// TODO aktualizovat dle soucasneho UI</span> |
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| 154 | <a name="l00195"></a>00195 <span class="comment"></span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#6564bdd36b6845a51446a192d33e1194" title="UI for class RV (description of data vectors).">from_setting</a>(<span class="keyword">const</span> Setting &<span class="keyword">set</span>); |
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| 155 | <a name="l00196"></a>00196 |
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| 156 | <a name="l00197"></a>00197 <span class="comment">// TODO dodelat void to_setting( Setting &set ) const;</span> |
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| 157 | <a name="l00198"></a>00198 }; |
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[398] | 158 | <a name="l00199"></a>00199 <a class="code" href="user__info_8h.html#4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a>(RV); |
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[397] | 159 | <a name="l00200"></a>00200 |
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| 160 | <a name="l00202"></a>00202 RV concat(<span class="keyword">const</span> RV &rv1, <span class="keyword">const</span> RV &rv2); |
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| 161 | <a name="l00203"></a>00203 |
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| 162 | <a name="l00205"></a>00205 <span class="keyword">extern</span> RV RV0; |
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| 163 | <a name="l00206"></a>00206 |
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| 164 | <a name="l00208"></a>00208 |
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| 165 | <a name="l00209"></a><a class="code" href="classbdm_1_1fnc.html">00209</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1fnc.html" title="Class representing function of variable represented by rv.">fnc</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
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| 166 | <a name="l00210"></a>00210 { |
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| 167 | <a name="l00211"></a>00211 <span class="keyword">protected</span>: |
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| 168 | <a name="l00213"></a><a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62">00213</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>; |
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| 169 | <a name="l00214"></a>00214 <span class="keyword">public</span>: |
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| 170 | <a name="l00216"></a><a class="code" href="classbdm_1_1fnc.html#65e9fb11f6cc7884018d8f229bcabbb7">00216</a> <a class="code" href="classbdm_1_1fnc.html#65e9fb11f6cc7884018d8f229bcabbb7" title="default constructor">fnc</a>() {}; |
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| 171 | <a name="l00218"></a><a class="code" href="classbdm_1_1fnc.html#6277b11d7fffc7ef8a2fa3e84ae5bad4">00218</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1fnc.html#6277b11d7fffc7ef8a2fa3e84ae5bad4" title="function evaluates numerical value of at cond ">eval</a>(<span class="keyword">const</span> vec &cond) { |
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| 172 | <a name="l00219"></a>00219 <span class="keywordflow">return</span> vec(0); |
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| 173 | <a name="l00220"></a>00220 }; |
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| 174 | <a name="l00221"></a>00221 |
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| 175 | <a name="l00223"></a><a class="code" href="classbdm_1_1fnc.html#0786e40fade2663a70d654c1dda5d73e">00223</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1fnc.html#0786e40fade2663a70d654c1dda5d73e" title="function substitutes given value into an appropriate position">condition</a>(<span class="keyword">const</span> vec &val) {}; |
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| 176 | <a name="l00224"></a>00224 |
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| 177 | <a name="l00226"></a><a class="code" href="classbdm_1_1fnc.html#083832294da9d1e40804158b979c4341">00226</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#083832294da9d1e40804158b979c4341" title="access function">dimension</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;} |
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| 178 | <a name="l00227"></a>00227 }; |
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| 179 | <a name="l00228"></a>00228 |
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| 180 | <a name="l00229"></a>00229 <span class="keyword">class </span>mpdf; |
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| 181 | <a name="l00230"></a>00230 |
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| 182 | <a name="l00232"></a>00232 |
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| 183 | <a name="l00233"></a><a class="code" href="classbdm_1_1epdf.html">00233</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
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| 184 | <a name="l00234"></a>00234 { |
---|
| 185 | <a name="l00235"></a>00235 <span class="keyword">protected</span>: |
---|
| 186 | <a name="l00237"></a><a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce">00237</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>; |
---|
| 187 | <a name="l00239"></a><a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8">00239</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>; |
---|
| 188 | <a name="l00240"></a>00240 |
---|
| 189 | <a name="l00241"></a>00241 <span class="keyword">public</span>: |
---|
| 190 | <a name="l00253"></a>00253 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>() : <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>(0), <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>() {}; |
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| 191 | <a name="l00254"></a>00254 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &e) : <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>(e.<a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>), <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>(e.<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>) {}; |
---|
| 192 | <a name="l00255"></a>00255 epdf(<span class="keyword">const</span> RV &rv0) {<a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a>(rv0);}; |
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| 193 | <a name="l00256"></a>00256 <span class="keywordtype">void</span> set_parameters(<span class="keywordtype">int</span> dim0) {<a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> = dim0;} |
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| 194 | <a name="l00258"></a>00258 |
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| 195 | <a name="l00261"></a>00261 |
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| 196 | <a name="l00263"></a><a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b">00263</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample, from density .">sample</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"not implemneted"</span>); <span class="keywordflow">return</span> vec(0);}; |
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| 197 | <a name="l00265"></a>00265 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#b4cf45fd83cc7573ede9fe1215256058" title="Returns N samples, from density .">sample_m</a>(<span class="keywordtype">int</span> N) <span class="keyword">const</span>; |
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| 198 | <a name="l00267"></a><a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249">00267</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val.">evallog</a>(<span class="keyword">const</span> vec &val)<span class="keyword"> const </span>{it_error(<span class="stringliteral">"not implemneted"</span>); <span class="keywordflow">return</span> 0.0;}; |
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| 199 | <a name="l00269"></a><a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62">00269</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62" title="Compute log-probability of multiple values argument val.">evallog_m</a>(<span class="keyword">const</span> mat &Val)<span class="keyword"> const </span>{ |
---|
| 200 | <a name="l00270"></a>00270 vec x(Val.cols()); |
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| 201 | <a name="l00271"></a>00271 <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < Val.cols(); i++) {x(i) = <a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val.">evallog</a>(Val.get_col(i)) ;} |
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| 202 | <a name="l00272"></a>00272 <span class="keywordflow">return</span> x; |
---|
| 203 | <a name="l00273"></a>00273 } |
---|
| 204 | <a name="l00275"></a><a class="code" href="classbdm_1_1epdf.html#512dbf057299e871fbc61ed55acb5888">00275</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#512dbf057299e871fbc61ed55acb5888" title="Compute log-probability of multiple values argument val.">evallog_m</a>(<span class="keyword">const</span> Array<vec> &Avec)<span class="keyword"> const </span>{ |
---|
| 205 | <a name="l00276"></a>00276 vec x(Avec.size()); |
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| 206 | <a name="l00277"></a>00277 <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < Avec.size(); i++) {x(i) = <a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val.">evallog</a>(Avec(i)) ;} |
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| 207 | <a name="l00278"></a>00278 <span class="keywordflow">return</span> x; |
---|
| 208 | <a name="l00279"></a>00279 } |
---|
| 209 | <a name="l00281"></a><a class="code" href="classbdm_1_1epdf.html#e584eac5579c1b6384947ecf66166c77">00281</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>* <a class="code" href="classbdm_1_1epdf.html#e584eac5579c1b6384947ecf66166c77" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>)<span class="keyword"> const </span>{it_warning(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> NULL;} |
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| 210 | <a name="l00282"></a>00282 |
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| 211 | <a name="l00284"></a><a class="code" href="classbdm_1_1epdf.html#3fb2ece54f720b62ad325e61214fa0a1">00284</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1epdf.html#3fb2ece54f720b62ad325e61214fa0a1" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>)<span class="keyword"> const </span>{it_warning(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> NULL;} |
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| 212 | <a name="l00285"></a>00285 |
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| 213 | <a name="l00287"></a><a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75">00287</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"not implemneted"</span>); <span class="keywordflow">return</span> vec(0);}; |
---|
| 214 | <a name="l00288"></a>00288 |
---|
| 215 | <a name="l00290"></a><a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c">00290</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"not implemneted"</span>); <span class="keywordflow">return</span> vec(0);}; |
---|
| 216 | <a name="l00292"></a><a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539">00292</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a>(vec &lb, vec &ub, <span class="keywordtype">double</span> percentage = 0.95)<span class="keyword"> const </span>{ |
---|
| 217 | <a name="l00293"></a>00293 vec mea = <a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>(); |
---|
| 218 | <a name="l00294"></a>00294 vec std = sqrt(<a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()); |
---|
| 219 | <a name="l00295"></a>00295 lb = mea - 2 * std; |
---|
| 220 | <a name="l00296"></a>00296 ub = mea + 2 * std; |
---|
| 221 | <a name="l00297"></a>00297 }; |
---|
| 222 | <a name="l00299"></a>00299 |
---|
| 223 | <a name="l00305"></a>00305 |
---|
| 224 | <a name="l00307"></a><a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff">00307</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv0) {<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> = rv0; } <span class="comment">//it_assert_debug(isnamed(),""); };</span> |
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| 225 | <a name="l00309"></a><a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9">00309</a> <span class="comment"></span> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>()<span class="keyword"> const </span>{<span class="keywordtype">bool</span> b = (<a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> == <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>()); <span class="keywordflow">return</span> b;} |
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| 226 | <a name="l00311"></a><a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21">00311</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>()<span class="keyword"> const </span>{it_assert_debug(<a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>(), <span class="stringliteral">""</span>); <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;} |
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| 227 | <a name="l00313"></a>00313 |
---|
| 228 | <a name="l00316"></a>00316 |
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| 229 | <a name="l00318"></a><a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c">00318</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;} |
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| 230 | <a name="l00326"></a><a class="code" href="classbdm_1_1epdf.html#fa9efc98a065b31c630fe18cc418f725">00326</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#fa9efc98a065b31c630fe18cc418f725">from_setting</a>(<span class="keyword">const</span> Setting &<span class="keyword">set</span>){ |
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| 231 | <a name="l00327"></a>00327 <span class="keywordflow">if</span> (<span class="keyword">set</span>.exists(<span class="stringliteral">"rv"</span>)){ |
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| 232 | <a name="l00328"></a>00328 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>* r = UI::build<RV>(<span class="keyword">set</span>,<span class="stringliteral">"rv"</span>); |
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| 233 | <a name="l00329"></a>00329 <a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a>(*r); |
---|
| 234 | <a name="l00330"></a>00330 <span class="keyword">delete</span> r; |
---|
| 235 | <a name="l00331"></a>00331 } |
---|
| 236 | <a name="l00332"></a>00332 } |
---|
| 237 | <a name="l00333"></a>00333 |
---|
| 238 | <a name="l00334"></a>00334 }; |
---|
| 239 | <a name="l00335"></a>00335 |
---|
| 240 | <a name="l00336"></a>00336 |
---|
| 241 | <a name="l00338"></a>00338 <span class="comment">//TODO Samplecond can be generalized</span> |
---|
| 242 | <a name="l00339"></a>00339 |
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| 243 | <a name="l00340"></a><a class="code" href="classbdm_1_1mpdf.html">00340</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
---|
| 244 | <a name="l00341"></a>00341 { |
---|
| 245 | <a name="l00342"></a>00342 <span class="keyword">protected</span>: |
---|
| 246 | <a name="l00344"></a><a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6">00344</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>; |
---|
| 247 | <a name="l00346"></a><a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288">00346</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>; |
---|
| 248 | <a name="l00348"></a><a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0">00348</a> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>; |
---|
| 249 | <a name="l00349"></a>00349 <span class="keyword">public</span>: |
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| 250 | <a name="l00352"></a>00352 |
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| 251 | <a name="l00353"></a>00353 <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>() : <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>(0), <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>() {}; |
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| 252 | <a name="l00355"></a><a class="code" href="classbdm_1_1mpdf.html#7089fcbd918f201fdf4256119e31f173">00355</a> <a class="code" href="classbdm_1_1mpdf.html#7089fcbd918f201fdf4256119e31f173" title="copy constructor does not set pointer ep - has to be done in offsprings!">mpdf</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> &m) : <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>(m.<a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>), <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>(m.<a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>) {}; |
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| 253 | <a name="l00357"></a>00357 |
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| 254 | <a name="l00360"></a>00360 |
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| 255 | <a name="l00362"></a><a class="code" href="classbdm_1_1mpdf.html#f0c1db6fcbb3aae2dd6123884457a367">00362</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#f0c1db6fcbb3aae2dd6123884457a367" title="Returns a sample from the density conditioned on cond, .">samplecond</a>(<span class="keyword">const</span> vec &cond) { |
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| 256 | <a name="l00363"></a>00363 this-><a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a>(cond); |
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| 257 | <a name="l00364"></a>00364 vec temp = <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample, from density .">sample</a>(); |
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| 258 | <a name="l00365"></a>00365 <span class="keywordflow">return</span> temp; |
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| 259 | <a name="l00366"></a>00366 }; |
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| 260 | <a name="l00368"></a><a class="code" href="classbdm_1_1mpdf.html#afe4185b26baeb03688202e254d3b005">00368</a> <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf.html#afe4185b26baeb03688202e254d3b005" title="Returns.">samplecond_m</a>(<span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N) { |
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| 261 | <a name="l00369"></a>00369 this-><a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a>(cond); |
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| 262 | <a name="l00370"></a>00370 mat temp(<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>(), N); |
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| 263 | <a name="l00371"></a>00371 vec smp(<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>()); |
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| 264 | <a name="l00372"></a>00372 <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < N; i++) {smp = <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample, from density .">sample</a>() ; temp.set_col(i, smp);} |
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| 265 | <a name="l00373"></a>00373 <span class="keywordflow">return</span> temp; |
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| 266 | <a name="l00374"></a>00374 }; |
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| 267 | <a name="l00376"></a><a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530">00376</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a>(<span class="keyword">const</span> vec &cond) {it_error(<span class="stringliteral">"Not implemented"</span>);}; |
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| 268 | <a name="l00377"></a>00377 |
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| 269 | <a name="l00379"></a><a class="code" href="classbdm_1_1mpdf.html#6336a8a72462e2a56a3989a220f18b1b">00379</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf.html#6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a>(<span class="keyword">const</span> vec &dt, <span class="keyword">const</span> vec &cond) { |
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| 270 | <a name="l00380"></a>00380 <span class="keywordtype">double</span> tmp; |
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| 271 | <a name="l00381"></a>00381 this-><a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a>(cond); |
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| 272 | <a name="l00382"></a>00382 tmp = <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val.">evallog</a>(dt); |
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| 273 | <a name="l00383"></a>00383 it_assert_debug(std::isfinite(tmp), <span class="stringliteral">"Infinite value"</span>); |
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| 274 | <a name="l00384"></a>00384 <span class="keywordflow">return</span> tmp; |
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| 275 | <a name="l00385"></a>00385 }; |
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| 276 | <a name="l00386"></a>00386 |
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| 277 | <a name="l00388"></a><a class="code" href="classbdm_1_1mpdf.html#0b0ed1ed663071bb7cf4a1349eb94fcb">00388</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#0b0ed1ed663071bb7cf4a1349eb94fcb" title="Matrix version of evallogcond.">evallogcond_m</a>(<span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond) {this-><a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a>(cond); <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62" title="Compute log-probability of multiple values argument val.">evallog_m</a>(Dt);}; |
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| 278 | <a name="l00390"></a><a class="code" href="classbdm_1_1mpdf.html#2a0d03756f59924fd038980ee60bd904">00390</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#2a0d03756f59924fd038980ee60bd904" title="Array&lt;vec&gt; version of evallogcond.">evallogcond_m</a>(<span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond) {this-><a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a>(cond); <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62" title="Compute log-probability of multiple values argument val.">evallog_m</a>(Dt);}; |
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| 279 | <a name="l00391"></a>00391 |
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| 280 | <a name="l00394"></a>00394 |
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| 281 | <a name="l00395"></a>00395 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> _rv() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();} |
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| 282 | <a name="l00396"></a>00396 RV _rvc() {it_assert_debug(isnamed(), <span class="stringliteral">""</span>); <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;} |
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| 283 | <a name="l00397"></a>00397 <span class="keywordtype">int</span> dimension() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>->dimension();} |
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| 284 | <a name="l00398"></a>00398 <span class="keywordtype">int</span> dimensionc() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;} |
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| 285 | <a name="l00399"></a>00399 epdf& _epdf() {<span class="keywordflow">return</span> *<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>;} |
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| 286 | <a name="l00400"></a>00400 epdf* _e() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>;} |
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| 287 | <a name="l00409"></a><a class="code" href="classbdm_1_1mpdf.html#30a0bceb948e287d497c578e371b1667">00409</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#30a0bceb948e287d497c578e371b1667">from_setting</a>(<span class="keyword">const</span> Setting &<span class="keyword">set</span>){ |
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| 288 | <a name="l00410"></a>00410 <span class="keywordflow">if</span> (<span class="keyword">set</span>.exists(<span class="stringliteral">"rv"</span>)){ |
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| 289 | <a name="l00411"></a>00411 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>* r = UI::build<RV>(<span class="keyword">set</span>,<span class="stringliteral">"rv"</span>); |
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| 290 | <a name="l00412"></a>00412 set_rv(*r); |
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| 291 | <a name="l00413"></a>00413 <span class="keyword">delete</span> r; |
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| 292 | <a name="l00414"></a>00414 } |
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| 293 | <a name="l00415"></a>00415 <span class="keywordflow">if</span> (<span class="keyword">set</span>.exists(<span class="stringliteral">"rvc"</span>)){ |
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| 294 | <a name="l00416"></a>00416 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>* r = UI::build<RV>(<span class="keyword">set</span>,<span class="stringliteral">"rvc"</span>); |
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| 295 | <a name="l00417"></a>00417 set_rvc(*r); |
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| 296 | <a name="l00418"></a>00418 <span class="keyword">delete</span> r; |
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| 297 | <a name="l00419"></a>00419 } |
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| 298 | <a name="l00420"></a>00420 } |
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| 299 | <a name="l00422"></a>00422 |
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| 300 | <a name="l00425"></a>00425 <span class="keywordtype">void</span> set_rvc(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc0) {<a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> = rvc0;} |
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| 301 | <a name="l00426"></a>00426 <span class="keywordtype">void</span> set_rv(<span class="keyword">const</span> RV &rv0) {<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>->set_rv(rv0);} |
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| 302 | <a name="l00427"></a>00427 <span class="keywordtype">bool</span> isnamed() {<span class="keywordflow">return</span> (<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>->isnamed()) && (<a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> == <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>._dsize());} |
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| 303 | <a name="l00429"></a>00429 }; |
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| 304 | <a name="l00430"></a>00430 |
---|
| 305 | <a name="l00456"></a><a class="code" href="classbdm_1_1datalink.html">00456</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> |
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| 306 | <a name="l00457"></a>00457 { |
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| 307 | <a name="l00458"></a>00458 <span class="keyword">protected</span>: |
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| 308 | <a name="l00460"></a><a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c">00460</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>; |
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| 309 | <a name="l00462"></a><a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045">00462</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>; |
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| 310 | <a name="l00464"></a><a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb">00464</a> ivec <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>; |
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| 311 | <a name="l00465"></a>00465 <span class="keyword">public</span>: |
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| 312 | <a name="l00467"></a><a class="code" href="classbdm_1_1datalink.html#b8b5d5074fc1310a37c3713d58b900e2">00467</a> <a class="code" href="classbdm_1_1datalink.html#b8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a>() {}; |
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| 313 | <a name="l00468"></a>00468 <a class="code" href="classbdm_1_1datalink.html#b8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up) {<a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a>(rv, rv_up);}; |
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| 314 | <a name="l00470"></a><a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67">00470</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up) { |
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| 315 | <a name="l00471"></a>00471 <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = rv.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(); |
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| 316 | <a name="l00472"></a>00472 <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> = rv_up.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(); |
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| 317 | <a name="l00473"></a>00473 <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a> = (rv.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(rv_up)); |
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| 318 | <a name="l00474"></a>00474 |
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| 319 | <a name="l00475"></a>00475 it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>.length() == <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>, <span class="stringliteral">"rv is not fully in rv_up"</span>); |
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| 320 | <a name="l00476"></a>00476 } |
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| 321 | <a name="l00478"></a><a class="code" href="classbdm_1_1datalink.html#724486a37002e7a3a73366c3af9b82ad">00478</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#724486a37002e7a3a73366c3af9b82ad" title="set connection using indeces">set_connection</a>(<span class="keywordtype">int</span> ds, <span class="keywordtype">int</span> us, <span class="keyword">const</span> ivec &upind) { |
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| 322 | <a name="l00479"></a>00479 <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = ds; |
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| 323 | <a name="l00480"></a>00480 <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> = us; |
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| 324 | <a name="l00481"></a>00481 <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a> = upind; |
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| 325 | <a name="l00482"></a>00482 |
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| 326 | <a name="l00483"></a>00483 it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>.length() == <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>, <span class="stringliteral">"rv is not fully in rv_up"</span>); |
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| 327 | <a name="l00484"></a>00484 } |
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| 328 | <a name="l00486"></a><a class="code" href="classbdm_1_1datalink.html#5b5368c3899eed2f670d09142c2548e5">00486</a> vec <a class="code" href="classbdm_1_1datalink.html#5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &quot;Up&quot;.">pushdown</a>(<span class="keyword">const</span> vec &val_up) { |
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| 329 | <a name="l00487"></a>00487 it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>); |
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| 330 | <a name="l00488"></a>00488 <span class="keywordflow">return</span> get_vec(val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>); |
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| 331 | <a name="l00489"></a>00489 } |
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| 332 | <a name="l00491"></a><a class="code" href="classbdm_1_1datalink.html#610e966f2edb1fcd6a5b28267c571793">00491</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#610e966f2edb1fcd6a5b28267c571793" title="Fill val of &quot;Up&quot; by my pieces.">pushup</a>(vec &val_up, <span class="keyword">const</span> vec &val) { |
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| 333 | <a name="l00492"></a>00492 it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">"Wrong val"</span>); |
---|
| 334 | <a name="l00493"></a>00493 it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>); |
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| 335 | <a name="l00494"></a>00494 set_subvector(val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>, val); |
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| 336 | <a name="l00495"></a>00495 } |
---|
| 337 | <a name="l00496"></a>00496 }; |
---|
| 338 | <a name="l00497"></a>00497 |
---|
| 339 | <a name="l00499"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00499</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> |
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| 340 | <a name="l00500"></a>00500 { |
---|
| 341 | <a name="l00501"></a>00501 <span class="keyword">protected</span>: |
---|
| 342 | <a name="l00503"></a><a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9">00503</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>; |
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| 343 | <a name="l00505"></a><a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783">00505</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>; |
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| 344 | <a name="l00507"></a><a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc">00507</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>; |
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| 345 | <a name="l00508"></a>00508 |
---|
| 346 | <a name="l00509"></a>00509 <span class="keyword">public</span>: |
---|
| 347 | <a name="l00510"></a>00510 <a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a>() {}; |
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| 348 | <a name="l00512"></a><a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0">00512</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0" title="Constructor.">set_connection</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up) { |
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| 349 | <a name="l00513"></a>00513 <a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0" title="Constructor.">datalink::set_connection</a>(rv, rv_up); |
---|
| 350 | <a name="l00514"></a>00514 <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> = rvc.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(); |
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| 351 | <a name="l00515"></a>00515 <span class="comment">//establish v2c connection</span> |
---|
| 352 | <a name="l00516"></a>00516 rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(rv_up, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>); |
---|
| 353 | <a name="l00517"></a>00517 } |
---|
| 354 | <a name="l00519"></a><a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703">00519</a> vec <a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a>(<span class="keyword">const</span> vec &val_up) { |
---|
| 355 | <a name="l00520"></a>00520 vec tmp(<a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>); |
---|
| 356 | <a name="l00521"></a>00521 set_subvector(tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>, val_up(<a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>)); |
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| 357 | <a name="l00522"></a>00522 <span class="keywordflow">return</span> tmp; |
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| 358 | <a name="l00523"></a>00523 } |
---|
| 359 | <a name="l00524"></a>00524 <span class="keywordtype">void</span> pushup_cond(vec &val_up, <span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond) { |
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| 360 | <a name="l00525"></a>00525 it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">"Wrong val"</span>); |
---|
| 361 | <a name="l00526"></a>00526 it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>); |
---|
| 362 | <a name="l00527"></a>00527 set_subvector(val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>, val); |
---|
| 363 | <a name="l00528"></a>00528 set_subvector(val_up, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>, cond); |
---|
| 364 | <a name="l00529"></a>00529 } |
---|
| 365 | <a name="l00530"></a>00530 }; |
---|
| 366 | <a name="l00533"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00533</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a> |
---|
| 367 | <a name="l00534"></a>00534 { |
---|
| 368 | <a name="l00535"></a>00535 <span class="keyword">protected</span>: |
---|
| 369 | <a name="l00537"></a><a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d">00537</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a>; |
---|
| 370 | <a name="l00539"></a><a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5">00539</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>; |
---|
| 371 | <a name="l00540"></a>00540 <span class="keyword">public</span>: |
---|
| 372 | <a name="l00542"></a><a class="code" href="classbdm_1_1datalink__m2m.html#3baed32cb66f0e2f731032cec0a4d287">00542</a> <a class="code" href="classbdm_1_1datalink__m2m.html#3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {}; |
---|
| 373 | <a name="l00543"></a>00543 <span class="keywordtype">void</span> set_connection(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc_up) { |
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| 374 | <a name="l00544"></a>00544 <a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0" title="Constructor.">datalink_m2e::set_connection</a>(rv, rvc, rv_up); |
---|
| 375 | <a name="l00545"></a>00545 <span class="comment">//establish c2c connection</span> |
---|
| 376 | <a name="l00546"></a>00546 rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a>); |
---|
| 377 | <a name="l00547"></a>00547 it_assert_debug(<a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>.length() + <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>.length() == <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">"cond is not fully given"</span>); |
---|
| 378 | <a name="l00548"></a>00548 } |
---|
| 379 | <a name="l00550"></a><a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90">00550</a> vec <a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &quot;Up&quot;.">get_cond</a>(<span class="keyword">const</span> vec &val_up, <span class="keyword">const</span> vec &cond_up) { |
---|
| 380 | <a name="l00551"></a>00551 vec tmp(<a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>); |
---|
| 381 | <a name="l00552"></a>00552 set_subvector(tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>, val_up(<a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>)); |
---|
| 382 | <a name="l00553"></a>00553 set_subvector(tmp, <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>, cond_up(<a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a>)); |
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| 383 | <a name="l00554"></a>00554 <span class="keywordflow">return</span> tmp; |
---|
| 384 | <a name="l00555"></a>00555 } |
---|
| 385 | <a name="l00557"></a>00557 |
---|
| 386 | <a name="l00558"></a>00558 }; |
---|
| 387 | <a name="l00559"></a>00559 |
---|
| 388 | <a name="l00565"></a><a class="code" href="classbdm_1_1logger.html">00565</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
---|
| 389 | <a name="l00566"></a>00566 { |
---|
| 390 | <a name="l00567"></a>00567 <span class="keyword">protected</span>: |
---|
| 391 | <a name="l00569"></a><a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f">00569</a> Array<RV> <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>; |
---|
| 392 | <a name="l00571"></a><a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02">00571</a> Array<string> <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>; |
---|
| 393 | <a name="l00572"></a>00572 <span class="keyword">public</span>: |
---|
| 394 | <a name="l00574"></a><a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf">00574</a> <a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a>() : <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>(0), <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>(0) {} |
---|
| 395 | <a name="l00575"></a>00575 |
---|
| 396 | <a name="l00578"></a><a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">00578</a> <span class="keyword">virtual</span> <span class="keywordtype">int</span> <span class="keyword">add</span>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keywordtype">string</span> prefix = <span class="stringliteral">""</span>) { |
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| 397 | <a name="l00579"></a>00579 <span class="keywordtype">int</span> id; |
---|
| 398 | <a name="l00580"></a>00580 <span class="keywordflow">if</span> (rv.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() > 0) { |
---|
| 399 | <a name="l00581"></a>00581 <span class="keywordtype">id</span> = <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length(); |
---|
| 400 | <a name="l00582"></a>00582 <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> = concat(<a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix); <span class="comment">// diff</span> |
---|
| 401 | <a name="l00583"></a>00583 <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length(<span class="keywordtype">id</span> + 1, <span class="keyword">true</span>); |
---|
| 402 | <a name="l00584"></a>00584 <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>(<span class="keywordtype">id</span>) = rv; |
---|
| 403 | <a name="l00585"></a>00585 } |
---|
| 404 | <a name="l00586"></a>00586 <span class="keywordflow">else</span> { <span class="keywordtype">id</span> = -1;} |
---|
| 405 | <a name="l00587"></a>00587 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span> |
---|
| 406 | <a name="l00588"></a>00588 } |
---|
| 407 | <a name="l00589"></a>00589 |
---|
| 408 | <a name="l00591"></a>00591 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &v) = 0; |
---|
| 409 | <a name="l00593"></a>00593 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &d) = 0; |
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| 410 | <a name="l00594"></a>00594 |
---|
| 411 | <a name="l00596"></a>00596 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#4f31c03578a7b9b30d8b1f8c338a37e8" title="Shifts storage position for another time step.">step</a>() = 0; |
---|
| 412 | <a name="l00597"></a>00597 |
---|
| 413 | <a name="l00599"></a><a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d">00599</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {}; |
---|
| 414 | <a name="l00600"></a>00600 |
---|
| 415 | <a name="l00602"></a><a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc">00602</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {}; |
---|
| 416 | <a name="l00603"></a>00603 |
---|
| 417 | <a name="l00604"></a>00604 }; |
---|
| 418 | <a name="l00605"></a>00605 |
---|
| 419 | <a name="l00609"></a><a class="code" href="classbdm_1_1mepdf.html">00609</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> { |
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| 420 | <a name="l00610"></a>00610 <span class="keywordtype">bool</span> owning_ep; <span class="comment">// flag trigers deleting ep by destructor</span> |
---|
| 421 | <a name="l00611"></a>00611 <span class="keyword">public</span>: |
---|
| 422 | <a name="l00613"></a><a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155">00613</a> <a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>(){}; |
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| 423 | <a name="l00614"></a>00614 <a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a> ( <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* em, <span class="keywordtype">bool</span> owning_ep0=<span class="keyword">false</span> ) :<a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> ( ) {<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>= em ;owning_ep=owning_ep0;<a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>=0;}; |
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| 424 | <a name="l00615"></a>00615 <a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a> (<span class="keyword">const</span> epdf* em ) :mpdf ( ) {<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>=<span class="keyword">const_cast<</span>epdf*<span class="keyword">></span>( em );}; |
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| 425 | <a name="l00616"></a><a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c">00616</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( <span class="keyword">const</span> vec &cond ) {} |
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| 426 | <a name="l00617"></a>00617 ~<a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a>(){<span class="keywordflow">if</span> (owning_ep) <span class="keyword">delete</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>;} |
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| 427 | <a name="l00625"></a><a class="code" href="classbdm_1_1mepdf.html#27ef18a3e3b1b5de02739d1324bf25fb">00625</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#27ef18a3e3b1b5de02739d1324bf25fb">from_setting</a>(<span class="keyword">const</span> Setting &<span class="keyword">set</span>){ |
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| 428 | <a name="l00626"></a>00626 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* e = UI::build<epdf>(<span class="keyword">set</span>,<span class="stringliteral">"epdf"</span>); |
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| 429 | <a name="l00627"></a>00627 <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>= e; |
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| 430 | <a name="l00628"></a>00628 owning_ep=<span class="keyword">true</span>; |
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| 431 | <a name="l00629"></a>00629 } |
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| 432 | <a name="l00630"></a>00630 }; |
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[398] | 433 | <a name="l00631"></a>00631 <a class="code" href="user__info_8h.html#4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a>(mepdf); |
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[397] | 434 | <a name="l00632"></a>00632 |
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| 435 | <a name="l00636"></a><a class="code" href="classbdm_1_1compositepdf.html">00636</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1compositepdf.html" title="Chain rule of pdfs - abstract part common for mprod and merger. this abstract class...">compositepdf</a> { |
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| 436 | <a name="l00637"></a>00637 <span class="keyword">protected</span>: |
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| 437 | <a name="l00639"></a><a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a">00639</a> Array<mpdf*> <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>; |
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| 438 | <a name="l00640"></a>00640 <span class="keywordtype">bool</span> owning_mpdfs; |
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| 439 | <a name="l00641"></a>00641 <span class="keyword">public</span>: |
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| 440 | <a name="l00642"></a>00642 <a class="code" href="classbdm_1_1compositepdf.html" title="Chain rule of pdfs - abstract part common for mprod and merger. this abstract class...">compositepdf</a>():<a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>(0){}; |
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| 441 | <a name="l00643"></a>00643 <a class="code" href="classbdm_1_1compositepdf.html" title="Chain rule of pdfs - abstract part common for mprod and merger. this abstract class...">compositepdf</a>(Array<mpdf*> A0, <span class="keywordtype">bool</span> own=<span class="keyword">false</span>){set_elements(A0,own);}; |
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| 442 | <a name="l00644"></a>00644 <span class="keywordtype">void</span> set_elements(Array<mpdf*> A0, <span class="keywordtype">bool</span> own=<span class="keyword">false</span>) {<a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>=A0;owning_mpdfs=own;}; |
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| 443 | <a name="l00646"></a>00646 RV <a class="code" href="classbdm_1_1compositepdf.html#c73d39acc4378eee6a63155c3517d3c9" title="find common rv, flag">getrv</a>(<span class="keywordtype">bool</span> checkoverlap = <span class="keyword">false</span>); |
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| 444 | <a name="l00648"></a>00648 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1compositepdf.html#c71fc2c51f49d797e61f479f543c75ce" title="common rvc of all mpdfs is written to rvc">setrvc</a>(<span class="keyword">const</span> RV &rv, RV &rvc); |
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| 445 | <a name="l00649"></a>00649 ~compositepdf(){<span class="keywordflow">if</span> (owning_mpdfs) <span class="keywordflow">for</span>(<span class="keywordtype">int</span> i=0;i<<a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>.length();i++){<span class="keyword">delete</span> <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>(i);}}; |
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| 446 | <a name="l00650"></a>00650 }; |
---|
| 447 | <a name="l00651"></a>00651 |
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| 448 | <a name="l00659"></a><a class="code" href="classbdm_1_1DS.html">00659</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
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| 449 | <a name="l00660"></a>00660 { |
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| 450 | <a name="l00661"></a>00661 <span class="keyword">protected</span>: |
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| 451 | <a name="l00662"></a>00662 <span class="keywordtype">int</span> dtsize; |
---|
| 452 | <a name="l00663"></a>00663 <span class="keywordtype">int</span> utsize; |
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| 453 | <a name="l00665"></a><a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec">00665</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>; |
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| 454 | <a name="l00667"></a><a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702">00667</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span> |
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| 455 | <a name="l00669"></a><a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867">00669</a> <span class="comment"></span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut; |
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| 456 | <a name="l00670"></a>00670 <span class="keyword">public</span>: |
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| 457 | <a name="l00672"></a><a class="code" href="classbdm_1_1DS.html#bedd82e08ae6686b4b1732a122c2201a">00672</a> <a class="code" href="classbdm_1_1DS.html#bedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() : <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>(), <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>() {}; |
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| 458 | <a name="l00674"></a><a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba">00674</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a>(vec &dt) {it_error(<span class="stringliteral">"abstract class"</span>);}; |
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| 459 | <a name="l00676"></a><a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832">00676</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a>(vec &dt, <span class="keyword">const</span> ivec &indeces) {it_error(<span class="stringliteral">"abstract class"</span>);}; |
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| 460 | <a name="l00678"></a><a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a">00678</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a>(vec &ut) {it_error(<span class="stringliteral">"abstract class"</span>);}; |
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| 461 | <a name="l00680"></a><a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d">00680</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d" title="Accepts action variables at specific indeces.">write</a>(vec &ut, <span class="keyword">const</span> ivec &indeces) {it_error(<span class="stringliteral">"abstract class"</span>);}; |
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| 462 | <a name="l00681"></a>00681 |
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| 463 | <a name="l00683"></a>00683 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#9a14c64d881e838ddc3a5617ee8a973b" title="Moves from to , i.e. perfroms the actions and reads response of the system.">step</a>() = 0; |
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| 464 | <a name="l00684"></a>00684 |
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| 465 | <a name="l00686"></a><a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e">00686</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a>(<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) { |
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| 466 | <a name="l00687"></a>00687 it_assert_debug(dtsize == <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(), <span class="stringliteral">""</span>); |
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| 467 | <a name="l00688"></a>00688 it_assert_debug(utsize == <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(), <span class="stringliteral">""</span>); |
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| 468 | <a name="l00689"></a>00689 |
---|
| 469 | <a name="l00690"></a>00690 <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a> = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <span class="stringliteral">""</span>); |
---|
| 470 | <a name="l00691"></a>00691 L_ut = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">""</span>); |
---|
| 471 | <a name="l00692"></a>00692 } |
---|
| 472 | <a name="l00694"></a><a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf">00694</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a>(<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) { |
---|
| 473 | <a name="l00695"></a>00695 vec tmp(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() + <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>()); |
---|
| 474 | <a name="l00696"></a>00696 <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a>(tmp); |
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| 475 | <a name="l00697"></a>00697 <span class="comment">// d is first in getdata</span> |
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| 476 | <a name="l00698"></a>00698 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, tmp.left(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>())); |
---|
| 477 | <a name="l00699"></a>00699 <span class="comment">// u follows after d in getdata</span> |
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| 478 | <a name="l00700"></a>00700 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(L_ut, tmp.mid(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(), <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>())); |
---|
| 479 | <a name="l00701"></a>00701 } |
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| 480 | <a name="l00703"></a><a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660">00703</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660" title="access function">_drv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> concat(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>);} |
---|
| 481 | <a name="l00705"></a><a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33">00705</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>;} |
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| 482 | <a name="l00707"></a><a class="code" href="classbdm_1_1DS.html#821297dfd839d68691324f024e57252f">00707</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#821297dfd839d68691324f024e57252f" title="set random rvariables">set_drv</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &drv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &urv) { <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = drv; <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv;} |
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| 483 | <a name="l00708"></a>00708 }; |
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| 484 | <a name="l00709"></a>00709 |
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| 485 | <a name="l00731"></a><a class="code" href="classbdm_1_1BM.html">00731</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
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| 486 | <a name="l00732"></a>00732 { |
---|
| 487 | <a name="l00733"></a>00733 <span class="keyword">protected</span>: |
---|
| 488 | <a name="l00735"></a><a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed">00735</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; |
---|
| 489 | <a name="l00737"></a><a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a">00737</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; |
---|
| 490 | <a name="l00739"></a><a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee">00739</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>; |
---|
| 491 | <a name="l00740"></a>00740 <span class="keyword">public</span>: |
---|
| 492 | <a name="l00743"></a>00743 |
---|
| 493 | <a name="l00744"></a>00744 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>() : <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>(0), <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>(true), <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(4), <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(4) { |
---|
| 494 | <a name="l00745"></a>00745 <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> = -1;<span class="comment">/*empty IDs*/</span> |
---|
| 495 | <a name="l00746"></a>00746 <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> = 0; |
---|
| 496 | <a name="l00747"></a>00747 <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(0) = 1;<span class="comment">/*log only mean*/</span> |
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| 497 | <a name="l00748"></a>00748 }; |
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| 498 | <a name="l00749"></a>00749 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &B) : <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>(B.<a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>(B.<a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>), <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>(B.<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>) {} |
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| 499 | <a name="l00752"></a><a class="code" href="classbdm_1_1BM.html#40f01563651c1e4fe926189e41a6b8ab">00752</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#40f01563651c1e4fe926189e41a6b8ab">_copy_</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> NULL;}; |
---|
| 500 | <a name="l00754"></a>00754 |
---|
| 501 | <a name="l00757"></a>00757 |
---|
| 502 | <a name="l00761"></a>00761 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a>(<span class="keyword">const</span> vec &dt) = 0; |
---|
| 503 | <a name="l00763"></a>00763 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a>(<span class="keyword">const</span> mat &Dt); |
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| 504 | <a name="l00766"></a><a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">00766</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a>(<span class="keyword">const</span> vec &dt)<span class="keyword"> const </span>{it_error(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> 0.0;} |
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| 505 | <a name="l00768"></a><a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae">00768</a> vec <a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a>(<span class="keyword">const</span> mat &dt)<span class="keyword"> const </span>{vec tmp(dt.cols()); <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < dt.cols(); i++) {tmp(i) = <a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a>(dt.get_col(i));} <span class="keywordflow">return</span> tmp;} |
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| 506 | <a name="l00769"></a>00769 |
---|
| 507 | <a name="l00771"></a><a class="code" href="classbdm_1_1BM.html#688d7a2aced1e06aa1c468d73a9e5eba">00771</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> NULL;}; |
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| 508 | <a name="l00773"></a><a class="code" href="classbdm_1_1BM.html#598b25e3f3d96a5bc00a5faeb5b3c912">00773</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs a conditional density 1-step ahead predictor.">predictor</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> NULL;}; |
---|
| 509 | <a name="l00775"></a>00775 |
---|
| 510 | <a name="l00780"></a>00780 |
---|
| 511 | <a name="l00782"></a><a class="code" href="classbdm_1_1BM.html#de95c590d650b2db423d53992f0906cb">00782</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rvc; |
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| 512 | <a name="l00784"></a><a class="code" href="classbdm_1_1BM.html#b5e8e016be16e4029c789063cb3f3b33">00784</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1BM.html#b5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> rvc;} |
---|
| 513 | <a name="l00785"></a>00785 |
---|
| 514 | <a name="l00787"></a><a class="code" href="classbdm_1_1BM.html#6799f4b16a6a59ed58b1d0d6e17116f4">00787</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a>(<span class="keyword">const</span> vec &val) {it_error(<span class="stringliteral">"Not implemented!"</span>);}; |
---|
| 515 | <a name="l00788"></a>00788 |
---|
| 516 | <a name="l00790"></a>00790 |
---|
| 517 | <a name="l00791"></a>00791 |
---|
| 518 | <a name="l00794"></a>00794 |
---|
| 519 | <a name="l00795"></a>00795 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& _drv()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;} |
---|
| 520 | <a name="l00796"></a>00796 <span class="keywordtype">void</span> set_drv(<span class="keyword">const</span> RV &rv) {<a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> = rv;} |
---|
| 521 | <a name="l00797"></a>00797 <span class="keywordtype">void</span> set_rv(<span class="keyword">const</span> RV &rv) {<span class="keyword">const_cast<</span>epdf&<span class="keyword">></span>(posterior()).set_rv(rv);} |
---|
| 522 | <a name="l00798"></a>00798 <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;} |
---|
| 523 | <a name="l00799"></a>00799 <span class="keywordtype">void</span> set_evalll(<span class="keywordtype">bool</span> evl0) {<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> = evl0;} |
---|
| 524 | <a name="l00800"></a>00800 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf& posterior() <span class="keyword">const</span> = 0; |
---|
| 525 | <a name="l00801"></a>00801 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf* _e() <span class="keyword">const</span> = 0; |
---|
| 526 | <a name="l00803"></a>00803 |
---|
| 527 | <a name="l00806"></a>00806 |
---|
| 528 | <a name="l00808"></a><a class="code" href="classbdm_1_1BM.html#adb539fa2585c8a2a91c54e5aebf330e">00808</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#adb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string recognized are: &quot;logbounds,logll&quot;.">set_options</a>(<span class="keyword">const</span> <span class="keywordtype">string</span> &opt) { |
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| 529 | <a name="l00809"></a>00809 <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(0) = 1; |
---|
| 530 | <a name="l00810"></a>00810 <span class="keywordflow">if</span> (opt.find(<span class="stringliteral">"logbounds"</span>) != string::npos) {<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(1) = 1; <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(2) = 1;} |
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| 531 | <a name="l00811"></a>00811 <span class="keywordflow">if</span> (opt.find(<span class="stringliteral">"logll"</span>) != string::npos) {<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(3) = 1;} |
---|
| 532 | <a name="l00812"></a>00812 } |
---|
| 533 | <a name="l00814"></a><a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca">00814</a> ivec <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>; |
---|
| 534 | <a name="l00815"></a>00815 |
---|
| 535 | <a name="l00817"></a><a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207">00817</a> ivec <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>; |
---|
| 536 | <a name="l00819"></a><a class="code" href="classbdm_1_1BM.html#2298ca6af9b13a78a4c9e18ab43f1827">00819</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a>(<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L, <span class="keyword">const</span> <span class="keywordtype">string</span> &name = <span class="stringliteral">""</span>) { |
---|
| 537 | <a name="l00820"></a>00820 <span class="comment">// internal</span> |
---|
| 538 | <a name="l00821"></a>00821 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r; |
---|
| 539 | <a name="l00822"></a>00822 <span class="keywordflow">if</span> (posterior().isnamed()) {r = posterior().<a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();} |
---|
| 540 | <a name="l00823"></a>00823 <span class="keywordflow">else</span> {r = <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>(<span class="stringliteral">"est"</span>, posterior().dimension());}; |
---|
| 541 | <a name="l00824"></a>00824 |
---|
| 542 | <a name="l00825"></a>00825 <span class="comment">// Add mean value</span> |
---|
| 543 | <a name="l00826"></a>00826 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(0)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(0) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(r, name + <span class="stringliteral">"mean_"</span>); |
---|
| 544 | <a name="l00827"></a>00827 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(1)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(1) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(r, name + <span class="stringliteral">"lb_"</span>); |
---|
| 545 | <a name="l00828"></a>00828 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(2)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(2) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(r, name + <span class="stringliteral">"ub_"</span>); |
---|
| 546 | <a name="l00829"></a>00829 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(3)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(3) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>(<span class="stringliteral">"ll"</span>, 1), name); <span class="comment">//TODO: "local" RV</span> |
---|
| 547 | <a name="l00830"></a>00830 } |
---|
| 548 | <a name="l00831"></a>00831 <span class="keyword">virtual</span> <span class="keywordtype">void</span> logit(<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) { |
---|
| 549 | <a name="l00832"></a>00832 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(0), posterior().mean()); |
---|
| 550 | <a name="l00833"></a>00833 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(1) || <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(2)) { <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span> |
---|
| 551 | <a name="l00834"></a>00834 vec ub, lb; |
---|
| 552 | <a name="l00835"></a>00835 posterior().<a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a>(lb, ub); |
---|
| 553 | <a name="l00836"></a>00836 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(1), lb); |
---|
| 554 | <a name="l00837"></a>00837 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(2), ub); |
---|
| 555 | <a name="l00838"></a>00838 } |
---|
| 556 | <a name="l00839"></a>00839 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(3)) L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(3), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>); |
---|
| 557 | <a name="l00840"></a>00840 } |
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| 558 | <a name="l00842"></a>00842 }; |
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| 559 | <a name="l00843"></a>00843 |
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| 560 | <a name="l00844"></a>00844 |
---|
| 561 | <a name="l00845"></a>00845 }; <span class="comment">//namespace</span> |
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| 562 | <a name="l00846"></a>00846 <span class="preprocessor">#endif // BDMBASE_H</span> |
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| 563 | </pre></div></div> |
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[398] | 564 | <hr size="1"><address style="text-align: right;"><small>Generated on Wed Jun 24 21:53:04 2009 for mixpp by |
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[397] | 565 | <a href="http://www.doxygen.org/index.html"> |
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| 566 | <img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.5.8 </small></address> |
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| 567 | </body> |
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| 568 | </html> |
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