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67	<h1>bdmbase.h</h1><a href="bdmbase_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001
68	<a name="l00013"></a>00013 <span class="preprocessor">#ifndef BDMBASE_H</span>
69	<a name="l00014"></a>00014 <span class="preprocessor"></span><span class="preprocessor">#define BDMBASE_H</span>
70	<a name="l00015"></a>00015 <span class="preprocessor"></span>
71	<a name="l00016"></a>00016 <span class="preprocessor">#include <map></span>
72	<a name="l00017"></a>00017
73	<a name="l00018"></a>00018 <span class="preprocessor">#include "../itpp_ext.h"</span>
74	<a name="l00019"></a>00019 <span class="preprocessor">#include "../bdmroot.h"</span>
75	<a name="l00020"></a>00020 <span class="preprocessor">#include "../shared_ptr.h"</span>
76	<a name="l00021"></a>00021 <span class="preprocessor">#include "<a class="code" href="user__info_8h.html" title="UI (user info) class for loading/saving objects from/to configuration files. It is...">user_info.h</a>"</span>
77	<a name="l00022"></a>00022
78	<a name="l00023"></a>00023 <span class="keyword">using namespace </span>libconfig;
79	<a name="l00024"></a>00024 <span class="keyword">using namespace </span>itpp;
80	<a name="l00025"></a>00025 <span class="keyword">using namespace </span>std;
81	<a name="l00026"></a>00026
82	<a name="l00027"></a>00027 <span class="keyword">namespace </span>bdm
83	<a name="l00028"></a>00028 {
84	<a name="l00029"></a>00029
85	<a name="l00030"></a>00030 <span class="keyword">typedef</span> std::map<string, int> RVmap;
86	<a name="l00032"></a>00032 <span class="keyword">extern</span> ivec RV_SIZES;
87	<a name="l00034"></a>00034 <span class="keyword">extern</span> Array<string> RV_NAMES;
88	<a name="l00035"></a>00035
89	<a name="l00037"></a><a class="code" href="classbdm_1_1str.html">00037</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a>
90	<a name="l00038"></a>00038 {
91	<a name="l00039"></a>00039 <span class="keyword">public</span>:
92	<a name="l00041"></a><a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0">00041</a> ivec <a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a>;
93	<a name="l00043"></a><a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a">00043</a> ivec <a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a>;
94	<a name="l00045"></a><a class="code" href="classbdm_1_1str.html#a7c6b9dccc6814d7bd1e8e2208a0d3f3f">00045</a> <a class="code" href="classbdm_1_1str.html#a7c6b9dccc6814d7bd1e8e2208a0d3f3f" title="Default constructor.">str</a> (ivec ids0, ivec times0) : <a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a> (ids0), <a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a> (times0) {
95	<a name="l00046"></a>00046 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (times0.length() == ids0.length(), <span class="stringliteral">"Incompatible input"</span>);
96	<a name="l00047"></a>00047 };
97	<a name="l00048"></a>00048 };
98	<a name="l00049"></a>00049
99	<a name="l00088"></a><a class="code" href="classbdm_1_1RV.html">00088</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a>
100	<a name="l00089"></a>00089 {
101	<a name="l00090"></a>00090 <span class="keyword">protected</span>:
102	<a name="l00092"></a><a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb">00092</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>;
103	<a name="l00094"></a><a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385">00094</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>;
104	<a name="l00096"></a><a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b">00096</a> ivec <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>;
105	<a name="l00098"></a><a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896">00098</a> ivec <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>;
106	<a name="l00099"></a>00099
107	<a name="l00100"></a>00100 <span class="keyword">private</span>:
108	<a name="l00102"></a>00102 <span class="keywordtype">void</span> init (<span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes, <span class="keyword">const</span> ivec &in_times);
109	<a name="l00103"></a>00103 <span class="keywordtype">int</span> init (<span class="keyword">const</span> <span class="keywordtype">string</span> &name, <span class="keywordtype">int</span> size);
110	<a name="l00104"></a>00104 <span class="keyword">public</span>:
111	<a name="l00107"></a>00107
112	<a name="l00109"></a><a class="code" href="classbdm_1_1RV.html#a3fa35c2744e687c74f7742990e6aa264">00109</a> <a class="code" href="classbdm_1_1RV.html#a3fa35c2744e687c74f7742990e6aa264" title="Full constructor.">RV</a> (<span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes, <span class="keyword">const</span> ivec &in_times) {
113	<a name="l00110"></a>00110 init (in_names, in_sizes, in_times);
114	<a name="l00111"></a>00111 }
115	<a name="l00112"></a>00112
116	<a name="l00114"></a><a class="code" href="classbdm_1_1RV.html#a381f5d963bb54efd4e76815dc93d50ce">00114</a> <a class="code" href="classbdm_1_1RV.html#a381f5d963bb54efd4e76815dc93d50ce" title="Constructor with times=0.">RV</a> (<span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes) {
117	<a name="l00115"></a>00115 init (in_names, in_sizes, zeros_i (in_names.length()));
118	<a name="l00116"></a>00116 }
119	<a name="l00117"></a>00117
120	<a name="l00119"></a><a class="code" href="classbdm_1_1RV.html#acb47d71d82639ec7ddf2635b21aafd00">00119</a> <a class="code" href="classbdm_1_1RV.html#acb47d71d82639ec7ddf2635b21aafd00" title="Constructor with sizes=1, times=0.">RV</a> (<span class="keyword">const</span> Array<std::string> &in_names) {
121	<a name="l00120"></a>00120 init (in_names, ones_i (in_names.length()), zeros_i (in_names.length()));
122	<a name="l00121"></a>00121 }
123	<a name="l00122"></a>00122
124	<a name="l00124"></a><a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412">00124</a> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a>() : <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a> (0), <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a> (0), <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (0), <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> (0) {}
125	<a name="l00125"></a>00125
126	<a name="l00127"></a>00127 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> (<span class="keywordtype">string</span> name, <span class="keywordtype">int</span> sz, <span class="keywordtype">int</span> tm = 0);
127	<a name="l00128"></a>00128
128	<a name="l00129"></a>00129 <span class="comment">// compiler-generated copy constructor is used</span>
129	<a name="l00131"></a>00131 <span class="comment"></span>
130	<a name="l00134"></a>00134
131	<a name="l00136"></a>00136 <span class="keyword">friend</span> std::ostream &<a class="code" href="classbdm_1_1RV.html#acad6f15535d10437f6690cb4492176a8" title="State output, e.g. for debugging.">operator<< </a>(std::ostream &os, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv);
132	<a name="l00137"></a>00137
133	<a name="l00138"></a>00138 <span class="keywordtype">int</span> _dsize()<span class="keyword"> const </span>{
134	<a name="l00139"></a>00139 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>;
135	<a name="l00140"></a>00140 }
136	<a name="l00141"></a>00141
137	<a name="l00143"></a><a class="code" href="classbdm_1_1RV.html#a26318eb90cb172ea86d1f45de9131c4e">00143</a> <span class="keyword">const</span> ivec& <a class="code" href="classbdm_1_1RV.html#a26318eb90cb172ea86d1f45de9131c4e" title="access function">_ids</a>()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>;}
138	<a name="l00144"></a>00144
139	<a name="l00146"></a>00146 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a39f9b44752376f07e346579b5ff8cbbd" title="Recount size of the corresponding data vector.">countsize</a>() <span class="keyword">const</span>;
140	<a name="l00147"></a>00147 ivec cumsizes() <span class="keyword">const</span>;
141	<a name="l00148"></a>00148 <span class="keywordtype">int</span> length()<span class="keyword"> const </span>{
142	<a name="l00149"></a>00149 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>;
143	<a name="l00150"></a>00150 }
144	<a name="l00151"></a>00151 <span class="keywordtype">int</span> id (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{
145	<a name="l00152"></a>00152 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (at);
146	<a name="l00153"></a>00153 }
147	<a name="l00154"></a>00154 <span class="keywordtype">int</span> size (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{
148	<a name="l00155"></a>00155 <span class="keywordflow">return</span> RV_SIZES (<a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (at));
149	<a name="l00156"></a>00156 }
150	<a name="l00157"></a>00157 <span class="keywordtype">int</span> time (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{
151	<a name="l00158"></a>00158 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> (at);
152	<a name="l00159"></a>00159 }
153	<a name="l00160"></a>00160 std::string name (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{
154	<a name="l00161"></a>00161 <span class="keywordflow">return</span> RV_NAMES (<a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (at));
155	<a name="l00162"></a>00162 }
156	<a name="l00163"></a>00163 <span class="keywordtype">void</span> set_time (<span class="keywordtype">int</span> at, <span class="keywordtype">int</span> time0) {
157	<a name="l00164"></a>00164 <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> (at) = time0;
158	<a name="l00165"></a>00165 }
159	<a name="l00167"></a>00167
160	<a name="l00170"></a>00170
161	<a name="l00172"></a>00172 ivec <a class="code" href="classbdm_1_1RV.html#a1367055b2608ad9d50d01a2da6cec869" title="Find indices of self in another rv,.">findself</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>;
162	<a name="l00174"></a>00174 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>;
163	<a name="l00176"></a>00176 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2);
164	<a name="l00178"></a>00178 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>;
165	<a name="l00180"></a>00180 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> (<span class="keyword">const</span> ivec &ind) <span class="keyword">const</span>;
166	<a name="l00181"></a>00181
167	<a name="l00183"></a><a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966">00183</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>(<span class="keyword">const</span> ivec &ind)<span class="keyword"> const </span>{
168	<a name="l00184"></a>00184 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> (ind);
169	<a name="l00185"></a>00185 }
170	<a name="l00186"></a>00186
171	<a name="l00188"></a>00188 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>(<span class="keywordtype">int</span> di1, <span class="keywordtype">int</span> di2) <span class="keyword">const</span>;
172	<a name="l00189"></a>00189
173	<a name="l00191"></a>00191 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#abd77cb0899f7fba1d0e34396137b7f1f" title="Shift time by delta.">t</a> (<span class="keywordtype">int</span> delta);
174	<a name="l00193"></a>00193
175	<a name="l00196"></a>00196
176	<a name="l00198"></a>00198 <a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> <a class="code" href="classbdm_1_1RV.html#a8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes">tostr</a>() <span class="keyword">const</span>;
177	<a name="l00201"></a>00201 ivec <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &crv) <span class="keyword">const</span>;
178	<a name="l00204"></a>00204 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv2, ivec &selfi, ivec &rv2i) <span class="keyword">const</span>;
179	<a name="l00206"></a><a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241">00206</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>()<span class="keyword"> const </span>{
180	<a name="l00207"></a>00207 <span class="keywordflow">return</span> min (<a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>);
181	<a name="l00208"></a>00208 }
182	<a name="l00210"></a>00210
183	<a name="l00225"></a>00225 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#a6564bdd36b6845a51446a192d33e1194" title="UI for class RV (description of data vectors).">from_setting</a> (<span class="keyword">const</span> Setting &<span class="keyword">set</span>);
184	<a name="l00226"></a>00226
185	<a name="l00227"></a>00227 <span class="comment">// TODO dodelat void to_setting( Setting &set ) const;</span>
186	<a name="l00229"></a>00229 <span class="comment"></span> <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#aab92b361335a644df654cf7cf7e5ffc0" title="Invalidate all named RVs. Use before initializing any RV instances, with care...">clear_all</a>();
187	<a name="l00230"></a>00230 };
188	<a name="l00231"></a>00231 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> (RV);
189	<a name="l00232"></a>00232 SHAREDPTR (RV);
190	<a name="l00233"></a>00233
191	<a name="l00235"></a>00235 RV concat (<span class="keyword">const</span> RV &rv1, <span class="keyword">const</span> RV &rv2);
192	<a name="l00236"></a>00236
193	<a name="l00238"></a>00238 <span class="keyword">extern</span> RV RV0;
194	<a name="l00239"></a>00239
195	<a name="l00241"></a>00241
196	<a name="l00242"></a><a class="code" href="classbdm_1_1fnc.html">00242</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1fnc.html" title="Class representing function of variable represented by rv.">fnc</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a>
197	<a name="l00243"></a>00243 {
198	<a name="l00244"></a>00244 <span class="keyword">protected</span>:
199	<a name="l00246"></a><a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62">00246</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;
200	<a name="l00247"></a>00247 <span class="keyword">public</span>:
201	<a name="l00249"></a><a class="code" href="classbdm_1_1fnc.html#a65e9fb11f6cc7884018d8f229bcabbb7">00249</a> <a class="code" href="classbdm_1_1fnc.html#a65e9fb11f6cc7884018d8f229bcabbb7" title="default constructor">fnc</a>() {};
202	<a name="l00251"></a><a class="code" href="classbdm_1_1fnc.html#a6277b11d7fffc7ef8a2fa3e84ae5bad4">00251</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1fnc.html#a6277b11d7fffc7ef8a2fa3e84ae5bad4" title="function evaluates numerical value of at cond ">eval</a> (<span class="keyword">const</span> vec &cond) {
203	<a name="l00252"></a>00252 <span class="keywordflow">return</span> vec (0);
204	<a name="l00253"></a>00253 };
205	<a name="l00254"></a>00254
206	<a name="l00256"></a><a class="code" href="classbdm_1_1fnc.html#a0786e40fade2663a70d654c1dda5d73e">00256</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1fnc.html#a0786e40fade2663a70d654c1dda5d73e" title="function substitutes given value into an appropriate position">condition</a> (<span class="keyword">const</span> vec &val) {};
207	<a name="l00257"></a>00257
208	<a name="l00259"></a><a class="code" href="classbdm_1_1fnc.html#a083832294da9d1e40804158b979c4341">00259</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a083832294da9d1e40804158b979c4341" title="access function">dimension</a>()<span class="keyword"> const </span>{
209	<a name="l00260"></a>00260 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;
210	<a name="l00261"></a>00261 }
211	<a name="l00262"></a>00262 };
212	<a name="l00263"></a>00263
213	<a name="l00264"></a>00264 <span class="keyword">class </span>mpdf;
214	<a name="l00265"></a>00265
215	<a name="l00267"></a>00267
216	<a name="l00268"></a><a class="code" href="classbdm_1_1epdf.html">00268</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a>
217	<a name="l00269"></a>00269 {
218	<a name="l00270"></a>00270 <span class="keyword">protected</span>:
219	<a name="l00272"></a><a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce">00272</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;
220	<a name="l00274"></a><a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8">00274</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;
221	<a name="l00275"></a>00275
222	<a name="l00276"></a>00276 <span class="keyword">public</span>:
223	<a name="l00288"></a>00288 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>() : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> (0), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>() {};
224	<a name="l00289"></a>00289 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &e) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> (e.<a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> (e.<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>) {};
225	<a name="l00290"></a>00290 epdf (<span class="keyword">const</span> RV &rv0) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> (rv0._dsize()) {
226	<a name="l00291"></a>00291 <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> (rv0);
227	<a name="l00292"></a>00292 };
228	<a name="l00293"></a>00293 <span class="keywordtype">void</span> set_parameters (<span class="keywordtype">int</span> dim0) {
229	<a name="l00294"></a>00294 <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> = dim0;
230	<a name="l00295"></a>00295 }
231	<a name="l00297"></a>00297
232	<a name="l00300"></a>00300
233	<a name="l00302"></a><a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b">00302</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample, from density .">sample</a>()<span class="keyword"> const </span>{
234	<a name="l00303"></a>00303 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"not implemented"</span>);
235	<a name="l00304"></a>00304 <span class="keywordflow">return</span> vec();
236	<a name="l00305"></a>00305 }
237	<a name="l00306"></a>00306
238	<a name="l00308"></a>00308 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#ab4cf45fd83cc7573ede9fe1215256058" title="Returns N samples, from density .">sample_m</a> (<span class="keywordtype">int</span> N) <span class="keyword">const</span>;
239	<a name="l00309"></a>00309
240	<a name="l00312"></a><a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">00312</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">evallog</a> (<span class="keyword">const</span> vec &val)<span class="keyword"> const </span>{
241	<a name="l00313"></a>00313 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"not implemented"</span>);
242	<a name="l00314"></a>00314 <span class="keywordflow">return</span> 0.0;
243	<a name="l00315"></a>00315 }
244	<a name="l00316"></a>00316
245	<a name="l00318"></a>00318 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> (<span class="keyword">const</span> mat &Val) <span class="keyword">const</span>;
246	<a name="l00319"></a>00319
247	<a name="l00321"></a>00321 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> (<span class="keyword">const</span> Array<vec> &Avec) <span class="keyword">const</span>;
248	<a name="l00322"></a>00322
249	<a name="l00324"></a>00324 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<mpdf></a> <a class="code" href="classbdm_1_1epdf.html#a1499d35b79bce0cfa64fc5cafb9c03b2" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>) <span class="keyword">const</span>;
250	<a name="l00325"></a>00325
251	<a name="l00327"></a>00327 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> <a class="code" href="classbdm_1_1epdf.html#aa84b05f5293cab2aeb4e07faffa60906" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>) <span class="keyword">const</span>;
252	<a name="l00328"></a>00328
253	<a name="l00330"></a><a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75">00330</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>()<span class="keyword"> const </span>{
254	<a name="l00331"></a>00331 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"not implemneted"</span>);
255	<a name="l00332"></a>00332 <span class="keywordflow">return</span> vec();
256	<a name="l00333"></a>00333 }
257	<a name="l00334"></a>00334
258	<a name="l00336"></a><a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c">00336</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()<span class="keyword"> const </span>{
259	<a name="l00337"></a>00337 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"not implemneted"</span>);
260	<a name="l00338"></a>00338 <span class="keywordflow">return</span> vec();
261	<a name="l00339"></a>00339 }
262	<a name="l00340"></a>00340
263	<a name="l00342"></a><a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539">00342</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> (vec &lb, vec &ub, <span class="keywordtype">double</span> percentage = 0.95)<span class="keyword"> const </span>{
264	<a name="l00343"></a>00343 vec mea = <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>();
265	<a name="l00344"></a>00344 vec std = sqrt (<a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>());
266	<a name="l00345"></a>00345 lb = mea - 2 * std;
267	<a name="l00346"></a>00346 ub = mea + 2 * std;
268	<a name="l00347"></a>00347 };
269	<a name="l00349"></a>00349
270	<a name="l00355"></a>00355
271	<a name="l00357"></a><a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff">00357</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv0) {
272	<a name="l00358"></a>00358 <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> = rv0;
273	<a name="l00359"></a>00359 }
274	<a name="l00360"></a>00360
275	<a name="l00362"></a><a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9">00362</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>()<span class="keyword"> const </span>{
276	<a name="l00363"></a>00363 <span class="keywordtype">bool</span> b = (<a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> == <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>._dsize());
277	<a name="l00364"></a>00364 <span class="keywordflow">return</span> b;
278	<a name="l00365"></a>00365 }
279	<a name="l00366"></a>00366
280	<a name="l00368"></a><a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21">00368</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>()<span class="keyword"> const </span>{
281	<a name="l00369"></a>00369 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (<a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>(), <span class="stringliteral">""</span>);
282	<a name="l00370"></a>00370 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;
283	<a name="l00371"></a>00371 }
284	<a name="l00373"></a>00373
285	<a name="l00376"></a>00376
286	<a name="l00378"></a><a class="code" href="classbdm_1_1epdf.html#a7083a65f7b7a0d0d13b2c516bd2ec29c">00378</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>()<span class="keyword"> const </span>{
287	<a name="l00379"></a>00379 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;
288	<a name="l00380"></a>00380 }
289	<a name="l00388"></a><a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725">00388</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725">from_setting</a> (<span class="keyword">const</span> Setting &<span class="keyword">set</span>) {
290	<a name="l00389"></a>00389 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr<RV></a> r = UI::build<RV> ( <span class="keyword">set</span>, <span class="stringliteral">"rv"</span>, UI::optional );
291	<a name="l00390"></a>00390 <span class="keywordflow">if</span> (r) {
292	<a name="l00391"></a>00391 <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> (*r);
293	<a name="l00392"></a>00392 }
294	<a name="l00393"></a>00393 }
295	<a name="l00394"></a>00394
296	<a name="l00395"></a>00395 };
297	<a name="l00396"></a>00396 SHAREDPTR(epdf);
298	<a name="l00397"></a>00397
299	<a name="l00399"></a><a class="code" href="classbdm_1_1mpdf.html">00399</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a>
300	<a name="l00400"></a>00400 {
301	<a name="l00401"></a>00401 <span class="keyword">protected</span>:
302	<a name="l00403"></a><a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6">00403</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;
303	<a name="l00405"></a><a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288">00405</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;
304	<a name="l00406"></a>00406 <span class="keyword">private</span>:
305	<a name="l00408"></a>00408 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* ep;
306	<a name="l00409"></a>00409
307	<a name="l00410"></a>00410 <span class="keyword">protected</span>:
308	<a name="l00412"></a><a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e">00412</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> (<a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &iepdf) {
309	<a name="l00413"></a>00413 ep = &iepdf;
310	<a name="l00414"></a>00414 }
311	<a name="l00416"></a><a class="code" href="classbdm_1_1mpdf.html#a7555b377f8b5895c9b759c9628ee3e20">00416</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a7555b377f8b5895c9b759c9628ee3e20" title="set internal pointer ep to point to given iepdf ">set_ep</a> (<a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> *iepdfp) {
312	<a name="l00417"></a>00417 ep = iepdfp;
313	<a name="l00418"></a>00418 }
314	<a name="l00419"></a>00419
315	<a name="l00420"></a>00420 <span class="keyword">public</span>:
316	<a name="l00423"></a>00423
317	<a name="l00424"></a>00424 <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>() : <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> (0), <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>(), ep (NULL) { }
318	<a name="l00425"></a>00425
319	<a name="l00426"></a>00426 mpdf (<span class="keyword">const</span> mpdf &m) : <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> (m.<a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>), <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> (m.<a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>), ep (m.ep) { }
320	<a name="l00428"></a>00428
321	<a name="l00431"></a>00431
322	<a name="l00433"></a><a class="code" href="classbdm_1_1mpdf.html#af0c1db6fcbb3aae2dd6123884457a367">00433</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#af0c1db6fcbb3aae2dd6123884457a367" title="Returns a sample from the density conditioned on cond, .">samplecond</a> (<span class="keyword">const</span> vec &cond) {
323	<a name="l00434"></a>00434 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>);
324	<a name="l00435"></a>00435 <span class="keywordflow">return</span> vec();
325	<a name="l00436"></a>00436 }
326	<a name="l00437"></a>00437
327	<a name="l00439"></a>00439 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf.html#a6e497d501331057309d2fddf63259d1a" title="Returns.">samplecond_m</a> (<span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N);
328	<a name="l00440"></a>00440
329	<a name="l00442"></a><a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b">00442</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> (<span class="keyword">const</span> vec &dt, <span class="keyword">const</span> vec &cond) {
330	<a name="l00443"></a>00443 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>);
331	<a name="l00444"></a>00444 <span class="keywordflow">return</span> 0.0;
332	<a name="l00445"></a>00445 }
333	<a name="l00446"></a>00446
334	<a name="l00448"></a><a class="code" href="classbdm_1_1mpdf.html#a0b0ed1ed663071bb7cf4a1349eb94fcb">00448</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#a0b0ed1ed663071bb7cf4a1349eb94fcb" title="Matrix version of evallogcond.">evallogcond_m</a> (<span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond) {
335	<a name="l00449"></a>00449 vec v(Dt.cols());
336	<a name="l00450"></a>00450 <span class="keywordflow">for</span>(<span class="keywordtype">int</span> i=0;i<Dt.cols();i++){v(i)= <a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a>(Dt.get_col(i),cond);}
337	<a name="l00451"></a>00451 <span class="keywordflow">return</span> v;
338	<a name="l00452"></a>00452 }
339	<a name="l00453"></a>00453
340	<a name="l00455"></a><a class="code" href="classbdm_1_1mpdf.html#a2a0d03756f59924fd038980ee60bd904">00455</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#a2a0d03756f59924fd038980ee60bd904" title="Array&lt;vec&gt; version of evallogcond.">evallogcond_m</a> (<span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond) {
341	<a name="l00456"></a>00456 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>);
342	<a name="l00457"></a>00457 <span class="keywordflow">return</span> vec();
343	<a name="l00458"></a>00458 }
344	<a name="l00459"></a>00459
345	<a name="l00462"></a>00462
346	<a name="l00463"></a>00463 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> _rv()<span class="keyword"> const </span>{
347	<a name="l00464"></a>00464 <span class="keywordflow">return</span> ep-><a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();
348	<a name="l00465"></a>00465 }
349	<a name="l00466"></a>00466 RV _rvc() {
350	<a name="l00467"></a>00467 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;
351	<a name="l00468"></a>00468 }
352	<a name="l00469"></a>00469
353	<a name="l00470"></a>00470 <span class="keywordtype">int</span> dimension()<span class="keyword"> const </span>{
354	<a name="l00471"></a>00471 <span class="keywordflow">return</span> ep->dimension();
355	<a name="l00472"></a>00472 }
356	<a name="l00473"></a>00473 <span class="keywordtype">int</span> dimensionc() {
357	<a name="l00474"></a>00474 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;
358	<a name="l00475"></a>00475 }
359	<a name="l00476"></a>00476
360	<a name="l00486"></a>00486 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a30a0bceb948e287d497c578e371b1667">from_setting</a> (<span class="keyword">const</span> Setting &<span class="keyword">set</span>);
361	<a name="l00488"></a>00488
362	<a name="l00491"></a>00491 <span class="keywordtype">void</span> set_rvc (<span class="keyword">const</span> RV &rvc0) {
363	<a name="l00492"></a>00492 <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> = rvc0;
364	<a name="l00493"></a>00493 }
365	<a name="l00494"></a>00494 <span class="keywordtype">void</span> set_rv (<span class="keyword">const</span> RV &rv0) {
366	<a name="l00495"></a>00495 ep->set_rv (rv0);
367	<a name="l00496"></a>00496 }
368	<a name="l00497"></a>00497 <span class="keywordtype">bool</span> isnamed() {
369	<a name="l00498"></a>00498 <span class="keywordflow">return</span> (ep->isnamed()) && (<a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> == <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>._dsize());
370	<a name="l00499"></a>00499 }
371	<a name="l00501"></a>00501 };
372	<a name="l00502"></a>00502 SHAREDPTR(mpdf);
373	<a name="l00503"></a>00503
374	<a name="l00505"></a>00505 <span class="keyword">template</span> <<span class="keyword">class</span> EPDF>
375	<a name="l00506"></a><a class="code" href="classbdm_1_1mpdf__internal.html">00506</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf__internal.html" title="Mpdf with internal epdf that is modified by function condition.">mpdf_internal</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>
376	<a name="l00507"></a>00507 {
377	<a name="l00508"></a>00508 <span class="keyword">protected</span> :
378	<a name="l00510"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468">00510</a> EPDF <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>;
379	<a name="l00511"></a>00511 <span class="keyword">public</span>:
380	<a name="l00513"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f">00513</a> <a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f" title="constructor">mpdf_internal</a>() : <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>(), <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>() {<a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> (<a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>);}
381	<a name="l00514"></a>00514
382	<a name="l00517"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">00517</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (<span class="keyword">const</span> vec &cond) {
383	<a name="l00518"></a>00518 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>);
384	<a name="l00519"></a>00519 }
385	<a name="l00520"></a>00520
386	<a name="l00522"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a">00522</a> EPDF& <a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a" title="access function to iepdf">e</a>() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>;}
387	<a name="l00523"></a>00523
388	<a name="l00525"></a>00525 vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">samplecond</a> (<span class="keyword">const</span> vec &cond);
389	<a name="l00527"></a>00527 <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">evallogcond</a> (<span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond);
390	<a name="l00529"></a>00529 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> (<span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond);
391	<a name="l00531"></a>00531 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> (<span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond);
392	<a name="l00533"></a>00533 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">samplecond_m</a> (<span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N);
393	<a name="l00534"></a>00534 };
394	<a name="l00535"></a>00535
395	<a name="l00561"></a><a class="code" href="classbdm_1_1datalink.html">00561</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a>
396	<a name="l00562"></a>00562 {
397	<a name="l00563"></a>00563 <span class="keyword">protected</span>:
398	<a name="l00565"></a><a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c">00565</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>;
399	<a name="l00566"></a>00566
400	<a name="l00568"></a><a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045">00568</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>;
401	<a name="l00569"></a>00569
402	<a name="l00571"></a><a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb">00571</a> ivec <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>;
403	<a name="l00572"></a>00572
404	<a name="l00573"></a>00573 <span class="keyword">public</span>:
405	<a name="l00575"></a><a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2">00575</a> <a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a>() : <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> (0), <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> (0) { }
406	<a name="l00576"></a>00576
407	<a name="l00578"></a><a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd">00578</a> <a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd" title="Convenience constructor.">datalink</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up) {
408	<a name="l00579"></a>00579 <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> (rv, rv_up);
409	<a name="l00580"></a>00580 }
410	<a name="l00581"></a>00581
411	<a name="l00583"></a>00583 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up);
412	<a name="l00584"></a>00584
413	<a name="l00586"></a>00586 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> (<span class="keywordtype">int</span> ds, <span class="keywordtype">int</span> us, <span class="keyword">const</span> ivec &upind);
414	<a name="l00587"></a>00587
415	<a name="l00589"></a><a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5">00589</a> vec <a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &quot;Up&quot;.">pushdown</a> (<span class="keyword">const</span> vec &val_up) {
416	<a name="l00590"></a>00590 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (<a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>);
417	<a name="l00591"></a>00591 <span class="keywordflow">return</span> get_vec (val_up, <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>);
418	<a name="l00592"></a>00592 }
419	<a name="l00593"></a>00593
420	<a name="l00595"></a><a class="code" href="classbdm_1_1datalink.html#a610e966f2edb1fcd6a5b28267c571793">00595</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#a610e966f2edb1fcd6a5b28267c571793" title="Fill val of &quot;Up&quot; by my pieces.">pushup</a> (vec &val_up, <span class="keyword">const</span> vec &val) {
421	<a name="l00596"></a>00596 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (<a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">"Wrong val"</span>);
422	<a name="l00597"></a>00597 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (<a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>);
423	<a name="l00598"></a>00598 set_subvector (val_up, <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>, val);
424	<a name="l00599"></a>00599 }
425	<a name="l00600"></a>00600 };
426	<a name="l00601"></a>00601
427	<a name="l00603"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00603</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a>
428	<a name="l00604"></a>00604 {
429	<a name="l00605"></a>00605 <span class="keyword">protected</span>:
430	<a name="l00607"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9">00607</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>;
431	<a name="l00608"></a>00608
432	<a name="l00610"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783">00610</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>;
433	<a name="l00611"></a>00611
434	<a name="l00613"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc">00613</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>;
435	<a name="l00614"></a>00614
436	<a name="l00615"></a>00615 <span class="keyword">public</span>:
437	<a name="l00617"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6">00617</a> <a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6" title="Constructor.">datalink_m2e</a>() : <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> (0) { }
438	<a name="l00618"></a>00618
439	<a name="l00620"></a>00620 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#aadd918bf877c48714cff51ee4ad989b0" title="Set connection between vectors.">set_connection</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up);
440	<a name="l00621"></a>00621
441	<a name="l00623"></a>00623 vec <a class="code" href="classbdm_1_1datalink__m2e.html#a7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> (<span class="keyword">const</span> vec &val_up);
442	<a name="l00624"></a>00624
443	<a name="l00626"></a>00626 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#ab29bc3c7bf2a1d87e77ccaa793d097d5" title="Copy corresponding values to Up.condition.">pushup_cond</a> (vec &val_up, <span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond);
444	<a name="l00627"></a>00627 };
445	<a name="l00628"></a>00628
446	<a name="l00631"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00631</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a>
447	<a name="l00632"></a>00632 {
448	<a name="l00633"></a>00633 <span class="keyword">protected</span>:
449	<a name="l00635"></a><a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d">00635</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>;
450	<a name="l00637"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5">00637</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>;
451	<a name="l00638"></a>00638
452	<a name="l00639"></a>00639 <span class="keyword">public</span>:
453	<a name="l00641"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287">00641</a> <a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {};
454	<a name="l00643"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4">00643</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">set_connection</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc_up) {
455	<a name="l00644"></a>00644 <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">datalink_m2e::set_connection</a> (rv, rvc, rv_up);
456	<a name="l00645"></a>00645 <span class="comment">//establish c2c connection</span>
457	<a name="l00646"></a>00646 rvc.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> (rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>);
458	<a name="l00647"></a>00647 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (<a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>.length() + <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>.length() == <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">"cond is not fully given"</span>);
459	<a name="l00648"></a>00648 }
460	<a name="l00649"></a>00649
461	<a name="l00651"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90">00651</a> vec <a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &quot;Up&quot;.">get_cond</a> (<span class="keyword">const</span> vec &val_up, <span class="keyword">const</span> vec &cond_up) {
462	<a name="l00652"></a>00652 vec tmp (<a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>);
463	<a name="l00653"></a>00653 set_subvector (tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, val_up (<a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>));
464	<a name="l00654"></a>00654 set_subvector (tmp, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, cond_up (<a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>));
465	<a name="l00655"></a>00655 <span class="keywordflow">return</span> tmp;
466	<a name="l00656"></a>00656 }
467	<a name="l00658"></a>00658
468	<a name="l00659"></a>00659 };
469	<a name="l00660"></a>00660
470	<a name="l00666"></a><a class="code" href="classbdm_1_1logger.html">00666</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a>
471	<a name="l00667"></a>00667 {
472	<a name="l00668"></a>00668 <span class="keyword">protected</span>:
473	<a name="l00670"></a><a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f">00670</a> Array<RV> <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>;
474	<a name="l00672"></a><a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02">00672</a> Array<string> <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>;
475	<a name="l00673"></a>00673 <span class="keyword">public</span>:
476	<a name="l00675"></a><a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf">00675</a> <a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a>() : <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> (0), <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> (0) {}
477	<a name="l00676"></a>00676
478	<a name="l00679"></a><a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">00679</a> <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keywordtype">string</span> prefix = <span class="stringliteral">""</span>) {
479	<a name="l00680"></a>00680 <span class="keywordtype">int</span> id;
480	<a name="l00681"></a>00681 <span class="keywordflow">if</span> (rv._dsize() > 0) {
481	<a name="l00682"></a>00682 <span class="keywordtype">id</span> = <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length();
482	<a name="l00683"></a>00683 <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> = concat (<a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix); <span class="comment">// diff</span>
483	<a name="l00684"></a>00684 <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length (<span class="keywordtype">id</span> + 1, <span class="keyword">true</span>);
484	<a name="l00685"></a>00685 <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> (<span class="keywordtype">id</span>) = rv;
485	<a name="l00686"></a>00686 } <span class="keywordflow">else</span> {
486	<a name="l00687"></a>00687 <span class="keywordtype">id</span> = -1;
487	<a name="l00688"></a>00688 }
488	<a name="l00689"></a>00689 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span>
489	<a name="l00690"></a>00690 }
490	<a name="l00691"></a>00691
491	<a name="l00693"></a><a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309">00693</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &v) {<a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a>(<span class="stringliteral">"Not implemented"</span>);};
492	<a name="l00695"></a><a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6">00695</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6" title="log this double">logit</a> (<span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &d) {<a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a>(<span class="stringliteral">"Not implemented"</span>);};
493	<a name="l00696"></a>00696
494	<a name="l00698"></a><a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99">00698</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99" title="Shifts storage position for another time step.">step</a>() {<a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a>(<span class="stringliteral">"Not implemneted"</span>);};
495	<a name="l00699"></a>00699
496	<a name="l00701"></a><a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d">00701</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {};
497	<a name="l00702"></a>00702
498	<a name="l00704"></a><a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc">00704</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {};
499	<a name="l00705"></a>00705
500	<a name="l00706"></a>00706 };
501	<a name="l00707"></a>00707
502	<a name="l00711"></a><a class="code" href="classbdm_1_1mepdf.html">00711</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>
503	<a name="l00712"></a>00712 {
504	<a name="l00714"></a>00714 <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> iepdf;
505	<a name="l00715"></a>00715 <span class="keyword">public</span>:
506	<a name="l00717"></a><a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155">00717</a> <a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>() { }
507	<a name="l00719"></a><a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c">00719</a> <a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c" title="Set internal shared pointer.">mepdf</a> (<a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> em) {
508	<a name="l00720"></a>00720 iepdf = em;
509	<a name="l00721"></a>00721 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> (*iepdf.<a class="code" href="classbdm_1_1shared__ptr.html#a37ebcfb6750dd7b5630f1d2354c07a96">get</a>());
510	<a name="l00722"></a>00722 <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> = 0;
511	<a name="l00723"></a>00723 }
512	<a name="l00724"></a>00724
513	<a name="l00726"></a><a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e">00726</a> vec <a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e" title="empty">samplecond</a>(<span class="keyword">const</span> vec &cond){<span class="keywordflow">return</span> iepdf->sample();}
514	<a name="l00727"></a><a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b">00727</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a>(<span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond){<span class="keywordflow">return</span> iepdf->evallog(val);}
515	<a name="l00728"></a>00728
516	<a name="l00736"></a>00736 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#a27ef18a3e3b1b5de02739d1324bf25fb">from_setting</a> (<span class="keyword">const</span> Setting &<span class="keyword">set</span>);
517	<a name="l00737"></a>00737 };
518	<a name="l00738"></a>00738 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> (mepdf);
519	<a name="l00739"></a>00739 SHAREDPTR (mepdf);
520	<a name="l00740"></a>00740
521	<a name="l00742"></a>00742 RV get_composite_rv ( <span class="keyword">const</span> Array<shared_ptr<mpdf> > &mpdfs, <span class="keywordtype">bool</span> checkoverlap = <span class="keyword">false</span> );
522	<a name="l00743"></a>00743
523	<a name="l00751"></a><a class="code" href="classbdm_1_1DS.html">00751</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a>
524	<a name="l00752"></a>00752 {
525	<a name="l00753"></a>00753 <span class="keyword">protected</span>:
526	<a name="l00754"></a>00754 <span class="keywordtype">int</span> dtsize;
527	<a name="l00755"></a>00755 <span class="keywordtype">int</span> utsize;
528	<a name="l00757"></a><a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec">00757</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>;
529	<a name="l00759"></a><a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702">00759</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span>
530	<a name="l00761"></a><a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867">00761</a> <span class="comment"></span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut;
531	<a name="l00762"></a>00762 <span class="keyword">public</span>:
532	<a name="l00764"></a><a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a">00764</a> <a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() : <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>() {};
533	<a name="l00765"></a>00765
534	<a name="l00767"></a><a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba">00767</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> (vec &dt) {
535	<a name="l00768"></a>00768 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"abstract class"</span>);
536	<a name="l00769"></a>00769 }
537	<a name="l00770"></a>00770
538	<a name="l00772"></a><a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832">00772</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a> (vec &dt, <span class="keyword">const</span> ivec &indeces) {
539	<a name="l00773"></a>00773 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"abstract class"</span>);
540	<a name="l00774"></a>00774 }
541	<a name="l00775"></a>00775
542	<a name="l00777"></a><a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a">00777</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> (vec &ut) {
543	<a name="l00778"></a>00778 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"abstract class"</span>);
544	<a name="l00779"></a>00779 }
545	<a name="l00780"></a>00780
546	<a name="l00782"></a><a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d">00782</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d" title="Accepts action variables at specific indeces.">write</a> (vec &ut, <span class="keyword">const</span> ivec &indeces) {
547	<a name="l00783"></a>00783 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"abstract class"</span>);
548	<a name="l00784"></a>00784 }
549	<a name="l00785"></a>00785
550	<a name="l00787"></a>00787 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a9a14c64d881e838ddc3a5617ee8a973b" title="Moves from to , i.e. perfroms the actions and reads response of the system.">step</a>() = 0;
551	<a name="l00788"></a>00788
552	<a name="l00790"></a><a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e">00790</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) {
553	<a name="l00791"></a>00791 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (dtsize == <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize(), <span class="stringliteral">"invalid DS: dtsize different from Drv"</span>);
554	<a name="l00792"></a>00792 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (utsize == <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>._dsize(), <span class="stringliteral">"invalid DS: utsize different from Urv"</span>);
555	<a name="l00793"></a>00793
556	<a name="l00794"></a>00794 <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a> = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <span class="stringliteral">""</span>);
557	<a name="l00795"></a>00795 L_ut = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">""</span>);
558	<a name="l00796"></a>00796 }
559	<a name="l00798"></a><a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf">00798</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) {
560	<a name="l00799"></a>00799 vec tmp (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize() + <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>._dsize());
561	<a name="l00800"></a>00800 <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> (tmp);
562	<a name="l00801"></a>00801 <span class="comment">// d is first in getdata</span>
563	<a name="l00802"></a>00802 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, tmp.left (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize()));
564	<a name="l00803"></a>00803 <span class="comment">// u follows after d in getdata</span>
565	<a name="l00804"></a>00804 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (L_ut, tmp.mid (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>._dsize()));
566	<a name="l00805"></a>00805 }
567	<a name="l00807"></a><a class="code" href="classbdm_1_1DS.html#aed2113851294ed96abe60fc3f05aa660">00807</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#aed2113851294ed96abe60fc3f05aa660" title="access function">_drv</a>()<span class="keyword"> const </span>{
568	<a name="l00808"></a>00808 <span class="keywordflow">return</span> concat (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>);
569	<a name="l00809"></a>00809 }
570	<a name="l00811"></a><a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33">00811</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{
571	<a name="l00812"></a>00812 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>;
572	<a name="l00813"></a>00813 }
573	<a name="l00815"></a><a class="code" href="classbdm_1_1DS.html#a821297dfd839d68691324f024e57252f">00815</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a821297dfd839d68691324f024e57252f" title="set random rvariables">set_drv</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &drv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &urv) {
574	<a name="l00816"></a>00816 <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = drv;
575	<a name="l00817"></a>00817 <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv;
576	<a name="l00818"></a>00818 }
577	<a name="l00819"></a>00819 };
578	<a name="l00820"></a>00820
579	<a name="l00842"></a><a class="code" href="classbdm_1_1BM.html">00842</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a>
580	<a name="l00843"></a>00843 {
581	<a name="l00844"></a>00844 <span class="keyword">protected</span>:
582	<a name="l00846"></a><a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed">00846</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;
583	<a name="l00848"></a><a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a">00848</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;
584	<a name="l00850"></a><a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee">00850</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>;
585	<a name="l00851"></a>00851 <span class="keyword">public</span>:
586	<a name="l00854"></a>00854
587	<a name="l00855"></a>00855 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>() : <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> (0), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> (true), <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (4), <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (4) {
588	<a name="l00856"></a>00856 <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> = -1;<span class="comment">/empty IDs/</span>
589	<a name="l00857"></a>00857 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> = 0;
590	<a name="l00858"></a>00858 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (0) = 1; <span class="comment">/log only mean/</span>
591	<a name="l00859"></a>00859 };
592	<a name="l00860"></a>00860 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &B) : <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> (B.<a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> (B.<a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> (B.<a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>) {}
593	<a name="l00863"></a><a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">00863</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">_copy_</a>()<span class="keyword"> const </span>{
594	<a name="l00864"></a>00864 <span class="keywordflow">return</span> NULL;
595	<a name="l00865"></a>00865 };
596	<a name="l00867"></a>00867
597	<a name="l00870"></a>00870
598	<a name="l00874"></a>00874 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> (<span class="keyword">const</span> vec &dt) = 0;
599	<a name="l00876"></a>00876 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> (<span class="keyword">const</span> mat &Dt);
600	<a name="l00879"></a><a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">00879</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> (<span class="keyword">const</span> vec &dt)<span class="keyword"> const </span>{
601	<a name="l00880"></a>00880 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>);
602	<a name="l00881"></a>00881 <span class="keywordflow">return</span> 0.0;
603	<a name="l00882"></a>00882 }
604	<a name="l00883"></a>00883
605	<a name="l00885"></a><a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae">00885</a> vec <a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> (<span class="keyword">const</span> mat &dt)<span class="keyword"> const </span>{
606	<a name="l00886"></a>00886 vec tmp (dt.cols());
607	<a name="l00887"></a>00887 <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < dt.cols(); i++) {
608	<a name="l00888"></a>00888 tmp (i) = <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> (dt.get_col (i));
609	<a name="l00889"></a>00889 }
610	<a name="l00890"></a>00890 <span class="keywordflow">return</span> tmp;
611	<a name="l00891"></a>00891 }
612	<a name="l00892"></a>00892
613	<a name="l00894"></a><a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba">00894</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a>()<span class="keyword"> const </span>{
614	<a name="l00895"></a>00895 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>);
615	<a name="l00896"></a>00896 <span class="keywordflow">return</span> NULL;
616	<a name="l00897"></a>00897 };
617	<a name="l00899"></a><a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912">00899</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs conditional density of 1-step ahead predictor .">predictor</a>()<span class="keyword"> const </span>{
618	<a name="l00900"></a>00900 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>);
619	<a name="l00901"></a>00901 <span class="keywordflow">return</span> NULL;
620	<a name="l00902"></a>00902 };
621	<a name="l00904"></a>00904
622	<a name="l00909"></a>00909
623	<a name="l00911"></a><a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb">00911</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>;
624	<a name="l00913"></a><a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33">00913</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{
625	<a name="l00914"></a>00914 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>;
626	<a name="l00915"></a>00915 }
627	<a name="l00916"></a>00916
628	<a name="l00918"></a><a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4">00918</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a> (<span class="keyword">const</span> vec &val) {
629	<a name="l00919"></a>00919 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented!"</span>);
630	<a name="l00920"></a>00920 }
631	<a name="l00921"></a>00921
632	<a name="l00923"></a>00923
633	<a name="l00924"></a>00924
634	<a name="l00927"></a>00927
635	<a name="l00928"></a>00928 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& _drv()<span class="keyword"> const </span>{
636	<a name="l00929"></a>00929 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;
637	<a name="l00930"></a>00930 }
638	<a name="l00931"></a>00931 <span class="keywordtype">void</span> set_drv (<span class="keyword">const</span> RV &rv) {
639	<a name="l00932"></a>00932 <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> = rv;
640	<a name="l00933"></a>00933 }
641	<a name="l00934"></a>00934 <span class="keywordtype">void</span> set_rv (<span class="keyword">const</span> RV &rv) {
642	<a name="l00935"></a>00935 <span class="keyword">const_cast<</span>epdf&<span class="keyword">></span> (posterior()).set_rv (rv);
643	<a name="l00936"></a>00936 }
644	<a name="l00937"></a>00937 <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{
645	<a name="l00938"></a>00938 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;
646	<a name="l00939"></a>00939 }
647	<a name="l00940"></a>00940 <span class="keywordtype">void</span> set_evalll (<span class="keywordtype">bool</span> evl0) {
648	<a name="l00941"></a>00941 <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> = evl0;
649	<a name="l00942"></a>00942 }
650	<a name="l00943"></a>00943 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf& posterior() <span class="keyword">const</span> = 0;
651	<a name="l00945"></a>00945
652	<a name="l00948"></a>00948
653	<a name="l00950"></a><a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e">00950</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &quot;logbounds,logll&quot;.">set_options</a> (<span class="keyword">const</span> <span class="keywordtype">string</span> &opt) {
654	<a name="l00951"></a>00951 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (0) = 1;
655	<a name="l00952"></a>00952 <span class="keywordflow">if</span> (opt.find (<span class="stringliteral">"logbounds"</span>) != string::npos) {
656	<a name="l00953"></a>00953 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (1) = 1;
657	<a name="l00954"></a>00954 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (2) = 1;
658	<a name="l00955"></a>00955 }
659	<a name="l00956"></a>00956 <span class="keywordflow">if</span> (opt.find (<span class="stringliteral">"logll"</span>) != string::npos) {
660	<a name="l00957"></a>00957 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (3) = 1;
661	<a name="l00958"></a>00958 }
662	<a name="l00959"></a>00959 }
663	<a name="l00961"></a><a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca">00961</a> ivec <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>;
664	<a name="l00962"></a>00962
665	<a name="l00964"></a><a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207">00964</a> ivec <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>;
666	<a name="l00966"></a><a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827">00966</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a> (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L, <span class="keyword">const</span> <span class="keywordtype">string</span> &name = <span class="stringliteral">""</span>) {
667	<a name="l00967"></a>00967 <span class="comment">// internal</span>
668	<a name="l00968"></a>00968 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r;
669	<a name="l00969"></a>00969 <span class="keywordflow">if</span> (posterior().isnamed()) {
670	<a name="l00970"></a>00970 r = posterior().<a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();
671	<a name="l00971"></a>00971 } <span class="keywordflow">else</span> {
672	<a name="l00972"></a>00972 r = <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> (<span class="stringliteral">"est"</span>, posterior().dimension());
673	<a name="l00973"></a>00973 };
674	<a name="l00974"></a>00974
675	<a name="l00975"></a>00975 <span class="comment">// Add mean value</span>
676	<a name="l00976"></a>00976 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (0)) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (0) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (r, name + <span class="stringliteral">"mean_"</span>);
677	<a name="l00977"></a>00977 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (1)) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (1) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (r, name + <span class="stringliteral">"lb_"</span>);
678	<a name="l00978"></a>00978 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (2)) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (2) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (r, name + <span class="stringliteral">"ub_"</span>);
679	<a name="l00979"></a>00979 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (3)) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (3) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> (<span class="stringliteral">"ll"</span>, 1), name); <span class="comment">//TODO: "local" RV</span>
680	<a name="l00980"></a>00980 }
681	<a name="l00981"></a>00981 <span class="keyword">virtual</span> <span class="keywordtype">void</span> logit (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) {
682	<a name="l00982"></a>00982 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (0), posterior().mean());
683	<a name="l00983"></a>00983 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (1) \|\| <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (2)) { <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span>
684	<a name="l00984"></a>00984 vec ub, lb;
685	<a name="l00985"></a>00985 posterior().<a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> (lb, ub);
686	<a name="l00986"></a>00986 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (1), lb);
687	<a name="l00987"></a>00987 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (2), ub);
688	<a name="l00988"></a>00988 }
689	<a name="l00989"></a>00989 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (3)) L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (3), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>);
690	<a name="l00990"></a>00990 }
691	<a name="l00992"></a><a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de">00992</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de" title="This method arrange instance properties according the data stored in the Setting...">from_setting</a> (<span class="keyword">const</span> Setting &<span class="keyword">set</span>){
692	<a name="l00993"></a>00993 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr<RV></a> r = UI::build<RV> ( <span class="keyword">set</span>, <span class="stringliteral">"drv"</span>, UI::optional );
693	<a name="l00994"></a>00994 <span class="keywordflow">if</span> (r) {
694	<a name="l00995"></a>00995 set_drv (*r);
695	<a name="l00996"></a>00996 }
696	<a name="l00997"></a>00997 <span class="keywordtype">string</span> opt;
697	<a name="l00998"></a>00998 <span class="keywordflow">if</span>(!<a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a>(opt, <span class="keyword">set</span>, <span class="stringliteral">"options"</span>, UI::optional)) {
698	<a name="l00999"></a>00999 <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &quot;logbounds,logll&quot;.">set_options</a>(opt);
699	<a name="l01000"></a>01000 }
700	<a name="l01001"></a>01001 }
701	<a name="l01002"></a>01002
702	<a name="l01003"></a>01003 };
703	<a name="l01004"></a>01004
704	<a name="l01005"></a>01005 <span class="keyword">typedef</span> Array<shared_ptr<epdf> > epdf_array;
705	<a name="l01006"></a>01006
706	<a name="l01007"></a>01007 <span class="keyword">typedef</span> Array<shared_ptr<mpdf> > mpdf_array;
707	<a name="l01008"></a>01008
708	<a name="l01009"></a>01009 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
709	<a name="l01010"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930">01010</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">mpdf_internal<EPDF>::samplecond</a> (<span class="keyword">const</span> vec &cond)
710	<a name="l01011"></a>01011 {
711	<a name="l01012"></a>01012 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond);
712	<a name="l01013"></a>01013 vec temp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample();
713	<a name="l01014"></a>01014 <span class="keywordflow">return</span> temp;
714	<a name="l01015"></a>01015 }
715	<a name="l01016"></a>01016
716	<a name="l01017"></a>01017 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
717	<a name="l01018"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823">01018</a> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">mpdf_internal<EPDF>::samplecond_m</a> (<span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N)
718	<a name="l01019"></a>01019 {
719	<a name="l01020"></a>01020 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond);
720	<a name="l01021"></a>01021 mat temp (dimension(), N);
721	<a name="l01022"></a>01022 vec smp (dimension());
722	<a name="l01023"></a>01023 <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < N; i++) {
723	<a name="l01024"></a>01024 smp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample();
724	<a name="l01025"></a>01025 temp.set_col (i, smp);
725	<a name="l01026"></a>01026 }
726	<a name="l01027"></a>01027
727	<a name="l01028"></a>01028 <span class="keywordflow">return</span> temp;
728	<a name="l01029"></a>01029 }
729	<a name="l01030"></a>01030
730	<a name="l01031"></a>01031 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
731	<a name="l01032"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948">01032</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">mpdf_internal<EPDF>::evallogcond</a> (<span class="keyword">const</span> vec &dt, <span class="keyword">const</span> vec &cond)
732	<a name="l01033"></a>01033 {
733	<a name="l01034"></a>01034 <span class="keywordtype">double</span> tmp;
734	<a name="l01035"></a>01035 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond);
735	<a name="l01036"></a>01036 tmp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog (dt);
736	<a name="l01037"></a>01037 <span class="keywordflow">return</span> tmp;
737	<a name="l01038"></a>01038 }
738	<a name="l01039"></a>01039
739	<a name="l01040"></a>01040 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
740	<a name="l01041"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c">01041</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal<EPDF>::evallogcond_m</a> (<span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond)
741	<a name="l01042"></a>01042 {
742	<a name="l01043"></a>01043 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond);
743	<a name="l01044"></a>01044 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m (Dt);
744	<a name="l01045"></a>01045 }
745	<a name="l01046"></a>01046
746	<a name="l01047"></a>01047 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
747	<a name="l01048"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae82db07ce8af02f29cfd81e014edb3db">01048</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal<EPDF>::evallogcond_m</a> (<span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond)
748	<a name="l01049"></a>01049 {
749	<a name="l01050"></a>01050 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond);
750	<a name="l01051"></a>01051 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m (Dt);
751	<a name="l01052"></a>01052 }
752	<a name="l01053"></a>01053
753	<a name="l01054"></a>01054 }; <span class="comment">//namespace</span>
754	<a name="l01055"></a>01055 <span class="preprocessor">#endif // BDMBASE_H</span>
755	</pre></div></div>
756	<hr size="1"/><address style="text-align: right;"><small>Generated on Sun Aug 30 22:10:49 2009 for mixpp by
757	<a href="http://www.doxygen.org/index.html">
758	<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>
759	</body>
760	</html>

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