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67 | <h1>bdmbase.h</h1><a href="bdmbase_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 |
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68 | <a name="l00013"></a>00013 <span class="preprocessor">#ifndef BDMBASE_H</span> |
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69 | <a name="l00014"></a>00014 <span class="preprocessor"></span><span class="preprocessor">#define BDMBASE_H</span> |
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70 | <a name="l00015"></a>00015 <span class="preprocessor"></span> |
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71 | <a name="l00016"></a>00016 <span class="preprocessor">#include <map></span> |
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72 | <a name="l00017"></a>00017 |
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73 | <a name="l00018"></a>00018 <span class="preprocessor">#include "../itpp_ext.h"</span> |
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74 | <a name="l00019"></a>00019 <span class="preprocessor">#include "../bdmroot.h"</span> |
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75 | <a name="l00020"></a>00020 <span class="preprocessor">#include "../shared_ptr.h"</span> |
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76 | <a name="l00021"></a>00021 <span class="preprocessor">#include "<a class="code" href="user__info_8h.html" title="UI (user info) class for loading/saving objects from/to configuration files. It is...">user_info.h</a>"</span> |
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77 | <a name="l00022"></a>00022 |
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78 | <a name="l00023"></a>00023 <span class="keyword">using namespace </span>libconfig; |
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79 | <a name="l00024"></a>00024 <span class="keyword">using namespace </span>itpp; |
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80 | <a name="l00025"></a>00025 <span class="keyword">using namespace </span>std; |
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81 | <a name="l00026"></a>00026 |
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82 | <a name="l00027"></a>00027 <span class="keyword">namespace </span>bdm { |
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83 | <a name="l00029"></a><a class="code" href="classbdm_1_1str.html">00029</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> { |
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84 | <a name="l00030"></a>00030 <span class="keyword">public</span>: |
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85 | <a name="l00032"></a><a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0">00032</a> ivec <a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a>; |
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86 | <a name="l00034"></a><a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a">00034</a> ivec <a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a>; |
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87 | <a name="l00036"></a><a class="code" href="classbdm_1_1str.html#a7c6b9dccc6814d7bd1e8e2208a0d3f3f">00036</a> <a class="code" href="classbdm_1_1str.html#a7c6b9dccc6814d7bd1e8e2208a0d3f3f" title="Default constructor.">str</a> ( ivec ids0, ivec times0 ) : <a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a> ( ids0 ), <a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a> ( times0 ) { |
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88 | <a name="l00037"></a>00037 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( times0.length() == ids0.length(), <span class="stringliteral">"Incompatible input"</span> ); |
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89 | <a name="l00038"></a>00038 }; |
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90 | <a name="l00039"></a>00039 }; |
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91 | <a name="l00040"></a>00040 |
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92 | <a name="l00079"></a><a class="code" href="classbdm_1_1RV.html">00079</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> { |
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93 | <a name="l00080"></a>00080 <span class="keyword">private</span>: |
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94 | <a name="l00081"></a>00081 <span class="keyword">typedef</span> std::map<string, int> str2int_map; |
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95 | <a name="l00082"></a>00082 |
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96 | <a name="l00084"></a>00084 <span class="keyword">static</span> ivec SIZES; |
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97 | <a name="l00086"></a>00086 <span class="keyword">static</span> Array<string> NAMES; |
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98 | <a name="l00087"></a>00087 |
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99 | <a name="l00089"></a>00089 <span class="keyword">const</span> <span class="keyword">static</span> <span class="keywordtype">int</span> BUFFER_STEP; |
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100 | <a name="l00090"></a>00090 |
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101 | <a name="l00092"></a>00092 <span class="keyword">static</span> str2int_map MAP; |
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102 | <a name="l00093"></a>00093 |
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103 | <a name="l00094"></a>00094 <span class="keyword">public</span>: |
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104 | <a name="l00095"></a>00095 |
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105 | <a name="l00096"></a>00096 <span class="keyword">protected</span>: |
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106 | <a name="l00098"></a><a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb">00098</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>; |
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107 | <a name="l00100"></a><a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385">00100</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>; |
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108 | <a name="l00102"></a><a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b">00102</a> ivec <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>; |
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109 | <a name="l00104"></a><a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896">00104</a> ivec <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>; |
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110 | <a name="l00105"></a>00105 |
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111 | <a name="l00106"></a>00106 <span class="keyword">private</span>: |
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112 | <a name="l00107"></a>00107 <span class="keyword">enum</span> enum_dummy {dummy}; |
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113 | <a name="l00108"></a>00108 |
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114 | <a name="l00110"></a>00110 <span class="keywordtype">void</span> init ( <span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes, <span class="keyword">const</span> ivec &in_times ); |
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115 | <a name="l00111"></a>00111 <span class="keywordtype">int</span> init ( <span class="keyword">const</span> <span class="keywordtype">string</span> &name, <span class="keywordtype">int</span> size ); |
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116 | <a name="l00114"></a>00114 <span class="keyword">explicit</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> ( <span class="keyword">const</span> ivec &ids0, enum_dummy dum ) : <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a> ( 0 ), <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a> ( ids0.<a class="code" href="classbdm_1_1RV.html#ae9ec8c3e756651ff352ab5e3d3acda4b" title="Number of named parts.">length</a>() ), <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( ids0 ), <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( zeros_i ( ids0.<a class="code" href="classbdm_1_1RV.html#ae9ec8c3e756651ff352ab5e3d3acda4b" title="Number of named parts.">length</a>() ) ) { |
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117 | <a name="l00115"></a>00115 <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a> = <a class="code" href="classbdm_1_1RV.html#a39f9b44752376f07e346579b5ff8cbbd" title="Recount size of the corresponding data vector.">countsize</a>(); |
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118 | <a name="l00116"></a>00116 } |
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119 | <a name="l00117"></a>00117 <span class="keyword">public</span>: |
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120 | <a name="l00120"></a>00120 |
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121 | <a name="l00122"></a><a class="code" href="classbdm_1_1RV.html#a3fa35c2744e687c74f7742990e6aa264">00122</a> <a class="code" href="classbdm_1_1RV.html#a3fa35c2744e687c74f7742990e6aa264" title="Full constructor.">RV</a> ( <span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes, <span class="keyword">const</span> ivec &in_times ) { |
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122 | <a name="l00123"></a>00123 init ( in_names, in_sizes, in_times ); |
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123 | <a name="l00124"></a>00124 } |
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124 | <a name="l00125"></a>00125 |
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125 | <a name="l00127"></a><a class="code" href="classbdm_1_1RV.html#a381f5d963bb54efd4e76815dc93d50ce">00127</a> <a class="code" href="classbdm_1_1RV.html#a381f5d963bb54efd4e76815dc93d50ce" title="Constructor with times=0.">RV</a> ( <span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes ) { |
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126 | <a name="l00128"></a>00128 init ( in_names, in_sizes, zeros_i ( in_names.length() ) ); |
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127 | <a name="l00129"></a>00129 } |
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128 | <a name="l00130"></a>00130 |
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129 | <a name="l00132"></a><a class="code" href="classbdm_1_1RV.html#acb47d71d82639ec7ddf2635b21aafd00">00132</a> <a class="code" href="classbdm_1_1RV.html#acb47d71d82639ec7ddf2635b21aafd00" title="Constructor with sizes=1, times=0.">RV</a> ( <span class="keyword">const</span> Array<std::string> &in_names ) { |
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130 | <a name="l00133"></a>00133 init ( in_names, ones_i ( in_names.length() ), zeros_i ( in_names.length() ) ); |
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131 | <a name="l00134"></a>00134 } |
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132 | <a name="l00135"></a>00135 |
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133 | <a name="l00137"></a><a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412">00137</a> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a>() : <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a> ( 0 ), <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a> ( 0 ), <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( 0 ), <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( 0 ) {} |
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134 | <a name="l00138"></a>00138 |
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135 | <a name="l00140"></a>00140 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> ( <span class="keywordtype">string</span> name, <span class="keywordtype">int</span> sz, <span class="keywordtype">int</span> tm = 0 ); |
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136 | <a name="l00141"></a>00141 |
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137 | <a name="l00142"></a>00142 <span class="comment">// compiler-generated copy constructor is used</span> |
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138 | <a name="l00144"></a>00144 <span class="comment"></span> |
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139 | <a name="l00147"></a>00147 |
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140 | <a name="l00149"></a>00149 <span class="keyword">friend</span> std::ostream &<a class="code" href="classbdm_1_1RV.html#acad6f15535d10437f6690cb4492176a8" title="State output, e.g. for debugging.">operator<< </a>( std::ostream &os, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv ); |
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141 | <a name="l00150"></a>00150 |
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142 | <a name="l00151"></a><a class="code" href="classbdm_1_1RV.html#ab361a9044e6a43102c4f873b9f566a0f">00151</a> <span class="keywordtype">string</span> <a class="code" href="classbdm_1_1RV.html#ab361a9044e6a43102c4f873b9f566a0f" title="This method returns a basic info about the current instance.">to_string</a>() {ostringstream o; o << <span class="keyword">this</span>; <span class="keywordflow">return</span> o.str();} |
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143 | <a name="l00152"></a>00152 |
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144 | <a name="l00154"></a><a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089">00154</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>()<span class="keyword"> const </span>{ |
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145 | <a name="l00155"></a>00155 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>; |
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146 | <a name="l00156"></a>00156 } |
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147 | <a name="l00157"></a>00157 |
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148 | <a name="l00159"></a><a class="code" href="classbdm_1_1RV.html#a26318eb90cb172ea86d1f45de9131c4e">00159</a> <span class="keyword">const</span> ivec& <a class="code" href="classbdm_1_1RV.html#a26318eb90cb172ea86d1f45de9131c4e" title="access function">_ids</a>()<span class="keyword"> const </span>{ |
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149 | <a name="l00160"></a>00160 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>; |
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150 | <a name="l00161"></a>00161 } |
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151 | <a name="l00162"></a>00162 |
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152 | <a name="l00164"></a>00164 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a39f9b44752376f07e346579b5ff8cbbd" title="Recount size of the corresponding data vector.">countsize</a>() <span class="keyword">const</span>; |
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153 | <a name="l00166"></a>00166 ivec <a class="code" href="classbdm_1_1RV.html#a412d43294bac38fa1804829e38fa4eaf" title="Vector of cumulative sizes of RV.">cumsizes</a>() <span class="keyword">const</span>; |
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154 | <a name="l00168"></a><a class="code" href="classbdm_1_1RV.html#ae9ec8c3e756651ff352ab5e3d3acda4b">00168</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#ae9ec8c3e756651ff352ab5e3d3acda4b" title="Number of named parts.">length</a>()<span class="keyword"> const </span>{ |
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155 | <a name="l00169"></a>00169 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>; |
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156 | <a name="l00170"></a>00170 } |
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157 | <a name="l00171"></a>00171 <span class="keywordtype">int</span> id ( <span class="keywordtype">int</span> at )<span class="keyword"> const </span>{ |
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158 | <a name="l00172"></a>00172 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at ); |
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159 | <a name="l00173"></a>00173 } |
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160 | <a name="l00174"></a>00174 <span class="keywordtype">int</span> size ( <span class="keywordtype">int</span> at )<span class="keyword"> const </span>{ |
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161 | <a name="l00175"></a>00175 <span class="keywordflow">return</span> SIZES ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at ) ); |
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162 | <a name="l00176"></a>00176 } |
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163 | <a name="l00177"></a>00177 <span class="keywordtype">int</span> time ( <span class="keywordtype">int</span> at )<span class="keyword"> const </span>{ |
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164 | <a name="l00178"></a>00178 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( at ); |
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165 | <a name="l00179"></a>00179 } |
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166 | <a name="l00180"></a>00180 std::string name ( <span class="keywordtype">int</span> at )<span class="keyword"> const </span>{ |
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167 | <a name="l00181"></a>00181 <span class="keywordflow">return</span> NAMES ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at ) ); |
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168 | <a name="l00182"></a>00182 } |
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169 | <a name="l00184"></a><a class="code" href="classbdm_1_1RV.html#a9bae3443ded87dc9941d763e4c48cee0">00184</a> std::string <a class="code" href="classbdm_1_1RV.html#a9bae3443ded87dc9941d763e4c48cee0" title="returns name of a scalar at position scalat, i.e. it can be in the middle of vector...">scalarname</a> ( <span class="keywordtype">int</span> scalat )<span class="keyword"> const </span>{ |
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170 | <a name="l00185"></a>00185 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a>(scalat<<a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>,<span class="stringliteral">"Wrong input index"</span>); |
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171 | <a name="l00186"></a>00186 <span class="keywordtype">int</span> <span class="keywordtype">id</span>=0; |
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172 | <a name="l00187"></a>00187 <span class="keywordtype">int</span> scalid=0; |
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173 | <a name="l00188"></a>00188 <span class="keywordflow">while</span> (scalid+SIZES(<a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(<span class="keywordtype">id</span>))<=scalat) { scalid+=SIZES(<a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(<span class="keywordtype">id</span>)); <span class="keywordtype">id</span>++;}; |
---|
174 | <a name="l00189"></a>00189 <span class="comment">//now id is the id of variable of interest</span> |
---|
175 | <a name="l00190"></a>00190 <span class="keywordflow">if</span> (size(<span class="keywordtype">id</span>)==1) |
---|
176 | <a name="l00191"></a>00191 <span class="keywordflow">return</span> NAMES ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( <span class="keywordtype">id</span> ) ); |
---|
177 | <a name="l00192"></a>00192 <span class="keywordflow">else</span> |
---|
178 | <a name="l00193"></a>00193 <span class="keywordflow">return</span> NAMES ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( <span class="keywordtype">id</span> ) )+ <span class="stringliteral">"_"</span> + num2str(scalat-scalid); |
---|
179 | <a name="l00194"></a>00194 |
---|
180 | <a name="l00195"></a>00195 } |
---|
181 | <a name="l00196"></a>00196 <span class="keywordtype">void</span> set_time ( <span class="keywordtype">int</span> at, <span class="keywordtype">int</span> time0 ) { |
---|
182 | <a name="l00197"></a>00197 <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( at ) = time0; |
---|
183 | <a name="l00198"></a>00198 } |
---|
184 | <a name="l00200"></a>00200 |
---|
185 | <a name="l00203"></a>00203 |
---|
186 | <a name="l00205"></a>00205 ivec <a class="code" href="classbdm_1_1RV.html#a1367055b2608ad9d50d01a2da6cec869" title="Find indices of self in another rv,.">findself</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2 ) <span class="keyword">const</span>; |
---|
187 | <a name="l00207"></a>00207 ivec <a class="code" href="classbdm_1_1RV.html#aa858d36d0264e1f1c89500531162fdf1" title="Find indices of self in another rv, ignore time,.">findself_ids</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2 ) <span class="keyword">const</span>; |
---|
188 | <a name="l00209"></a>00209 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2 ) <span class="keyword">const</span>; |
---|
189 | <a name="l00211"></a>00211 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2 ); |
---|
190 | <a name="l00213"></a>00213 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2 ) <span class="keyword">const</span>; |
---|
191 | <a name="l00215"></a>00215 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( <span class="keyword">const</span> ivec &ind ) <span class="keyword">const</span>; |
---|
192 | <a name="l00216"></a>00216 |
---|
193 | <a name="l00218"></a><a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966">00218</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>( <span class="keyword">const</span> ivec &ind )<span class="keyword"> const </span>{ |
---|
194 | <a name="l00219"></a>00219 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( ind ); |
---|
195 | <a name="l00220"></a>00220 } |
---|
196 | <a name="l00221"></a>00221 |
---|
197 | <a name="l00223"></a>00223 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>( <span class="keywordtype">int</span> di1, <span class="keywordtype">int</span> di2 ) <span class="keyword">const</span>; |
---|
198 | <a name="l00224"></a>00224 |
---|
199 | <a name="l00226"></a>00226 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a> ( <span class="keywordtype">int</span> delta ); |
---|
200 | <a name="l00228"></a>00228 |
---|
201 | <a name="l00231"></a>00231 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> remove_time()<span class="keyword"> const </span>{ |
---|
202 | <a name="l00232"></a>00232 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> ( unique ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ), dummy ); |
---|
203 | <a name="l00233"></a>00233 } |
---|
204 | <a name="l00235"></a><a class="code" href="classbdm_1_1RV.html#a627222f49abc5d07e5e8aecac7708ee2">00235</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a627222f49abc5d07e5e8aecac7708ee2" title="create new RV from the current one with time shifted by given value">copy_t</a>(<span class="keywordtype">int</span> dt)<span class="keyword"> const </span>{ |
---|
205 | <a name="l00236"></a>00236 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> tmp=*<span class="keyword">this</span>; |
---|
206 | <a name="l00237"></a>00237 tmp.<a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a>(dt); |
---|
207 | <a name="l00238"></a>00238 <span class="keywordflow">return</span> tmp; |
---|
208 | <a name="l00239"></a>00239 } |
---|
209 | <a name="l00241"></a><a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e">00241</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e" title="return rvs with expanded delayes and sorted in the order of:">expand_delayes</a>()<span class="keyword"> const </span>{ |
---|
210 | <a name="l00242"></a>00242 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rvt = this->remove_time(); <span class="comment">//rv at t=0</span> |
---|
211 | <a name="l00243"></a>00243 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> tmp = rvt; |
---|
212 | <a name="l00244"></a>00244 <span class="keywordtype">int</span> td = <a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>(); |
---|
213 | <a name="l00245"></a>00245 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = -1; i >= td; i-- ) { |
---|
214 | <a name="l00246"></a>00246 rvt.<a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a> ( -1 ); |
---|
215 | <a name="l00247"></a>00247 tmp.<a class="code" href="classbdm_1_1RV.html#a87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a> ( rvt ); <span class="comment">//shift u1</span> |
---|
216 | <a name="l00248"></a>00248 } |
---|
217 | <a name="l00249"></a>00249 <span class="keywordflow">return</span> tmp; |
---|
218 | <a name="l00250"></a>00250 } |
---|
219 | <a name="l00252"></a>00252 |
---|
220 | <a name="l00255"></a>00255 |
---|
221 | <a name="l00257"></a>00257 <a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> <a class="code" href="classbdm_1_1RV.html#a8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes">tostr</a>() <span class="keyword">const</span>; |
---|
222 | <a name="l00260"></a>00260 ivec <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &crv ) <span class="keyword">const</span>; |
---|
223 | <a name="l00262"></a>00262 ivec <a class="code" href="classbdm_1_1RV.html#a0c6e3a1c54a612d2ea390c841aa5eb6f" title="same as dataind but this time crv should not be complete supperset of rv.">dataind_part</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &crv ) <span class="keyword">const</span>; |
---|
224 | <a name="l00265"></a>00265 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv2, ivec &selfi, ivec &rv2i ) <span class="keyword">const</span>; |
---|
225 | <a name="l00267"></a><a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241">00267</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>()<span class="keyword"> const </span>{ |
---|
226 | <a name="l00268"></a>00268 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>.length()>0 ? min (<a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>) : 0; |
---|
227 | <a name="l00269"></a>00269 } |
---|
228 | <a name="l00271"></a>00271 |
---|
229 | <a name="l00286"></a>00286 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#a6564bdd36b6845a51446a192d33e1194" title="UI for class RV (description of data vectors).">from_setting</a> ( <span class="keyword">const</span> Setting &<span class="keyword">set</span> ); |
---|
230 | <a name="l00287"></a>00287 |
---|
231 | <a name="l00288"></a>00288 <span class="comment">// TODO dodelat void to_setting( Setting &set ) const;</span> |
---|
232 | <a name="l00289"></a>00289 |
---|
233 | <a name="l00291"></a>00291 <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#aab92b361335a644df654cf7cf7e5ffc0" title="Invalidate all named RVs. Use before initializing any RV instances, with care...">clear_all</a>(); |
---|
234 | <a name="l00293"></a>00293 <span class="keywordtype">string</span> <a class="code" href="classbdm_1_1RV.html#a0743ab524c18d0c6553b29b043fd42bd" title="function for debugging RV related stuff">show_all</a>(); |
---|
235 | <a name="l00294"></a>00294 |
---|
236 | <a name="l00295"></a>00295 }; |
---|
237 | <a name="l00296"></a>00296 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( RV ); |
---|
238 | <a name="l00297"></a>00297 SHAREDPTR ( RV ); |
---|
239 | <a name="l00298"></a>00298 |
---|
240 | <a name="l00300"></a>00300 RV concat ( <span class="keyword">const</span> RV &rv1, <span class="keyword">const</span> RV &rv2 ); |
---|
241 | <a name="l00301"></a>00301 |
---|
242 | <a name="l00303"></a><a class="code" href="classbdm_1_1fnc.html">00303</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1fnc.html" title="Class representing function of variable represented by rv.">fnc</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> { |
---|
243 | <a name="l00304"></a>00304 <span class="keyword">protected</span>: |
---|
244 | <a name="l00306"></a><a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62">00306</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>; |
---|
245 | <a name="l00307"></a>00307 <span class="keyword">public</span>: |
---|
246 | <a name="l00309"></a><a class="code" href="classbdm_1_1fnc.html#a65e9fb11f6cc7884018d8f229bcabbb7">00309</a> <a class="code" href="classbdm_1_1fnc.html#a65e9fb11f6cc7884018d8f229bcabbb7" title="default constructor">fnc</a>() {}; |
---|
247 | <a name="l00311"></a><a class="code" href="classbdm_1_1fnc.html#a6277b11d7fffc7ef8a2fa3e84ae5bad4">00311</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1fnc.html#a6277b11d7fffc7ef8a2fa3e84ae5bad4" title="function evaluates numerical value of at cond ">eval</a> ( <span class="keyword">const</span> vec &cond ) { |
---|
248 | <a name="l00312"></a>00312 <span class="keywordflow">return</span> vec ( 0 ); |
---|
249 | <a name="l00313"></a>00313 }; |
---|
250 | <a name="l00314"></a>00314 |
---|
251 | <a name="l00316"></a><a class="code" href="classbdm_1_1fnc.html#a0786e40fade2663a70d654c1dda5d73e">00316</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1fnc.html#a0786e40fade2663a70d654c1dda5d73e" title="function substitutes given value into an appropriate position">condition</a> ( <span class="keyword">const</span> vec &val ) {}; |
---|
252 | <a name="l00317"></a>00317 |
---|
253 | <a name="l00319"></a><a class="code" href="classbdm_1_1fnc.html#a083832294da9d1e40804158b979c4341">00319</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a083832294da9d1e40804158b979c4341" title="access function">dimension</a>()<span class="keyword"> const </span>{ |
---|
254 | <a name="l00320"></a>00320 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>; |
---|
255 | <a name="l00321"></a>00321 } |
---|
256 | <a name="l00322"></a>00322 }; |
---|
257 | <a name="l00323"></a>00323 |
---|
258 | <a name="l00324"></a>00324 <span class="keyword">class </span>mpdf; |
---|
259 | <a name="l00325"></a>00325 |
---|
260 | <a name="l00327"></a>00327 |
---|
261 | <a name="l00328"></a><a class="code" href="classbdm_1_1epdf.html">00328</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> { |
---|
262 | <a name="l00329"></a>00329 <span class="keyword">protected</span>: |
---|
263 | <a name="l00331"></a><a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce">00331</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>; |
---|
264 | <a name="l00333"></a><a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8">00333</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>; |
---|
265 | <a name="l00334"></a>00334 |
---|
266 | <a name="l00335"></a>00335 <span class="keyword">public</span>: |
---|
267 | <a name="l00347"></a>00347 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>() : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( 0 ), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>() {}; |
---|
268 | <a name="l00348"></a>00348 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &e ) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( e.<a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ( e.<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) {}; |
---|
269 | <a name="l00349"></a>00349 epdf ( <span class="keyword">const</span> RV &rv0 ) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( rv0._dsize() ) { |
---|
270 | <a name="l00350"></a>00350 <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( rv0 ); |
---|
271 | <a name="l00351"></a>00351 }; |
---|
272 | <a name="l00352"></a>00352 <span class="keywordtype">void</span> set_parameters ( <span class="keywordtype">int</span> dim0 ) { |
---|
273 | <a name="l00353"></a>00353 <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> = dim0; |
---|
274 | <a name="l00354"></a>00354 } |
---|
275 | <a name="l00356"></a>00356 |
---|
276 | <a name="l00359"></a>00359 |
---|
277 | <a name="l00361"></a><a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b">00361</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample, from density .">sample</a>()<span class="keyword"> const </span>{ |
---|
278 | <a name="l00362"></a>00362 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"not implemented"</span> ); |
---|
279 | <a name="l00363"></a>00363 <span class="keywordflow">return</span> vec(); |
---|
280 | <a name="l00364"></a>00364 } |
---|
281 | <a name="l00365"></a>00365 |
---|
282 | <a name="l00367"></a>00367 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#ab4cf45fd83cc7573ede9fe1215256058" title="Returns N samples, from density .">sample_m</a> ( <span class="keywordtype">int</span> N ) <span class="keyword">const</span>; |
---|
283 | <a name="l00368"></a>00368 |
---|
284 | <a name="l00371"></a><a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">00371</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val In case the argument is out of suport return...">evallog</a> ( <span class="keyword">const</span> vec &val )<span class="keyword"> const </span>{ |
---|
285 | <a name="l00372"></a>00372 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"not implemented"</span> ); |
---|
286 | <a name="l00373"></a>00373 <span class="keywordflow">return</span> 0.0; |
---|
287 | <a name="l00374"></a>00374 } |
---|
288 | <a name="l00375"></a>00375 |
---|
289 | <a name="l00377"></a>00377 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( <span class="keyword">const</span> mat &Val ) <span class="keyword">const</span>; |
---|
290 | <a name="l00378"></a>00378 |
---|
291 | <a name="l00380"></a>00380 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( <span class="keyword">const</span> Array<vec> &Avec ) <span class="keyword">const</span>; |
---|
292 | <a name="l00381"></a>00381 |
---|
293 | <a name="l00383"></a>00383 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<mpdf></a> <a class="code" href="classbdm_1_1epdf.html#a1499d35b79bce0cfa64fc5cafb9c03b2" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) <span class="keyword">const</span>; |
---|
294 | <a name="l00384"></a>00384 |
---|
295 | <a name="l00386"></a>00386 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> <a class="code" href="classbdm_1_1epdf.html#aa84b05f5293cab2aeb4e07faffa60906" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) <span class="keyword">const</span>; |
---|
296 | <a name="l00387"></a>00387 |
---|
297 | <a name="l00389"></a><a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75">00389</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>()<span class="keyword"> const </span>{ |
---|
298 | <a name="l00390"></a>00390 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"not implemneted"</span> ); |
---|
299 | <a name="l00391"></a>00391 <span class="keywordflow">return</span> vec(); |
---|
300 | <a name="l00392"></a>00392 } |
---|
301 | <a name="l00393"></a>00393 |
---|
302 | <a name="l00395"></a><a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c">00395</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()<span class="keyword"> const </span>{ |
---|
303 | <a name="l00396"></a>00396 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"not implemneted"</span> ); |
---|
304 | <a name="l00397"></a>00397 <span class="keywordflow">return</span> vec(); |
---|
305 | <a name="l00398"></a>00398 } |
---|
306 | <a name="l00399"></a>00399 |
---|
307 | <a name="l00401"></a><a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539">00401</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( vec &lb, vec &ub, <span class="keywordtype">double</span> percentage = 0.95 )<span class="keyword"> const </span>{ |
---|
308 | <a name="l00402"></a>00402 vec mea = <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>(); |
---|
309 | <a name="l00403"></a>00403 vec std = sqrt ( <a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>() ); |
---|
310 | <a name="l00404"></a>00404 lb = mea - 2 * std; |
---|
311 | <a name="l00405"></a>00405 ub = mea + 2 * std; |
---|
312 | <a name="l00406"></a>00406 }; |
---|
313 | <a name="l00408"></a>00408 |
---|
314 | <a name="l00414"></a>00414 |
---|
315 | <a name="l00416"></a><a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff">00416</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv0 ) { |
---|
316 | <a name="l00417"></a>00417 <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> = rv0; |
---|
317 | <a name="l00418"></a>00418 } |
---|
318 | <a name="l00419"></a>00419 |
---|
319 | <a name="l00421"></a><a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9">00421</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>()<span class="keyword"> const </span>{ |
---|
320 | <a name="l00422"></a>00422 <span class="keywordtype">bool</span> b = ( <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> == <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ); |
---|
321 | <a name="l00423"></a>00423 <span class="keywordflow">return</span> b; |
---|
322 | <a name="l00424"></a>00424 } |
---|
323 | <a name="l00425"></a>00425 |
---|
324 | <a name="l00427"></a><a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21">00427</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>()<span class="keyword"> const </span>{ |
---|
325 | <a name="l00428"></a>00428 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>(), <span class="stringliteral">""</span> ); |
---|
326 | <a name="l00429"></a>00429 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>; |
---|
327 | <a name="l00430"></a>00430 } |
---|
328 | <a name="l00432"></a>00432 |
---|
329 | <a name="l00435"></a>00435 |
---|
330 | <a name="l00437"></a><a class="code" href="classbdm_1_1epdf.html#a7083a65f7b7a0d0d13b2c516bd2ec29c">00437</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>()<span class="keyword"> const </span>{ |
---|
331 | <a name="l00438"></a>00438 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>; |
---|
332 | <a name="l00439"></a>00439 } |
---|
333 | <a name="l00447"></a><a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725">00447</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &<span class="keyword">set</span> ) { |
---|
334 | <a name="l00448"></a>00448 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr<RV></a> r = UI::build<RV> ( <span class="keyword">set</span>, <span class="stringliteral">"rv"</span>, UI::optional ); |
---|
335 | <a name="l00449"></a>00449 <span class="keywordflow">if</span> ( r ) { |
---|
336 | <a name="l00450"></a>00450 <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( *r ); |
---|
337 | <a name="l00451"></a>00451 } |
---|
338 | <a name="l00452"></a>00452 } |
---|
339 | <a name="l00453"></a>00453 |
---|
340 | <a name="l00454"></a>00454 }; |
---|
341 | <a name="l00455"></a>00455 SHAREDPTR ( epdf ); |
---|
342 | <a name="l00456"></a>00456 |
---|
343 | <a name="l00458"></a><a class="code" href="classbdm_1_1mpdf.html">00458</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> { |
---|
344 | <a name="l00459"></a>00459 <span class="keyword">protected</span>: |
---|
345 | <a name="l00461"></a><a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6">00461</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>; |
---|
346 | <a name="l00463"></a><a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288">00463</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>; |
---|
347 | <a name="l00464"></a>00464 <span class="keyword">private</span>: |
---|
348 | <a name="l00466"></a>00466 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* ep; |
---|
349 | <a name="l00467"></a>00467 |
---|
350 | <a name="l00468"></a>00468 <span class="keyword">protected</span>: |
---|
351 | <a name="l00470"></a><a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e">00470</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &iepdf ) { |
---|
352 | <a name="l00471"></a>00471 ep = &iepdf; |
---|
353 | <a name="l00472"></a>00472 } |
---|
354 | <a name="l00474"></a><a class="code" href="classbdm_1_1mpdf.html#a7555b377f8b5895c9b759c9628ee3e20">00474</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a7555b377f8b5895c9b759c9628ee3e20" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> *iepdfp ) { |
---|
355 | <a name="l00475"></a>00475 ep = iepdfp; |
---|
356 | <a name="l00476"></a>00476 } |
---|
357 | <a name="l00477"></a>00477 |
---|
358 | <a name="l00478"></a>00478 <span class="keyword">public</span>: |
---|
359 | <a name="l00481"></a>00481 |
---|
360 | <a name="l00482"></a>00482 <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>() : <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ( 0 ), <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>(), ep ( NULL ) { } |
---|
361 | <a name="l00483"></a>00483 |
---|
362 | <a name="l00484"></a>00484 mpdf ( <span class="keyword">const</span> mpdf &m ) : <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ( m.<a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ), <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ( m.<a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ), ep ( m.ep ) { } |
---|
363 | <a name="l00486"></a>00486 |
---|
364 | <a name="l00489"></a>00489 |
---|
365 | <a name="l00491"></a><a class="code" href="classbdm_1_1mpdf.html#af0c1db6fcbb3aae2dd6123884457a367">00491</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#af0c1db6fcbb3aae2dd6123884457a367" title="Returns a sample from the density conditioned on cond, .">samplecond</a> ( <span class="keyword">const</span> vec &cond ) { |
---|
366 | <a name="l00492"></a>00492 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> ); |
---|
367 | <a name="l00493"></a>00493 <span class="keywordflow">return</span> vec(); |
---|
368 | <a name="l00494"></a>00494 } |
---|
369 | <a name="l00495"></a>00495 |
---|
370 | <a name="l00497"></a>00497 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf.html#a6e497d501331057309d2fddf63259d1a" title="Returns.">samplecond_m</a> ( <span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N ); |
---|
371 | <a name="l00498"></a>00498 |
---|
372 | <a name="l00500"></a><a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b">00500</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &dt, <span class="keyword">const</span> vec &cond ) { |
---|
373 | <a name="l00501"></a>00501 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> ); |
---|
374 | <a name="l00502"></a>00502 <span class="keywordflow">return</span> 0.0; |
---|
375 | <a name="l00503"></a>00503 } |
---|
376 | <a name="l00504"></a>00504 |
---|
377 | <a name="l00506"></a><a class="code" href="classbdm_1_1mpdf.html#a0b0ed1ed663071bb7cf4a1349eb94fcb">00506</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#a0b0ed1ed663071bb7cf4a1349eb94fcb" title="Matrix version of evallogcond.">evallogcond_m</a> ( <span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond ) { |
---|
378 | <a name="l00507"></a>00507 vec v ( Dt.cols() ); |
---|
379 | <a name="l00508"></a>00508 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i < Dt.cols(); i++ ) { |
---|
380 | <a name="l00509"></a>00509 v ( i ) = <a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( Dt.get_col ( i ), cond ); |
---|
381 | <a name="l00510"></a>00510 } |
---|
382 | <a name="l00511"></a>00511 <span class="keywordflow">return</span> v; |
---|
383 | <a name="l00512"></a>00512 } |
---|
384 | <a name="l00513"></a>00513 |
---|
385 | <a name="l00515"></a><a class="code" href="classbdm_1_1mpdf.html#a2a0d03756f59924fd038980ee60bd904">00515</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#a2a0d03756f59924fd038980ee60bd904" title="Array&lt;vec&gt; version of evallogcond.">evallogcond_m</a> ( <span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond ) { |
---|
386 | <a name="l00516"></a>00516 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> ); |
---|
387 | <a name="l00517"></a>00517 <span class="keywordflow">return</span> vec(); |
---|
388 | <a name="l00518"></a>00518 } |
---|
389 | <a name="l00519"></a>00519 |
---|
390 | <a name="l00522"></a>00522 |
---|
391 | <a name="l00523"></a>00523 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& _rv()<span class="keyword"> const </span>{ |
---|
392 | <a name="l00524"></a>00524 <span class="keywordflow">return</span> ep-><a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>(); |
---|
393 | <a name="l00525"></a>00525 } |
---|
394 | <a name="l00526"></a>00526 <span class="keyword">const</span> RV& _rvc()<span class="keyword"> const </span>{ |
---|
395 | <a name="l00527"></a>00527 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>; |
---|
396 | <a name="l00528"></a>00528 } |
---|
397 | <a name="l00529"></a>00529 |
---|
398 | <a name="l00530"></a>00530 <span class="keywordtype">int</span> dimension()<span class="keyword"> const </span>{ |
---|
399 | <a name="l00531"></a>00531 <span class="keywordflow">return</span> ep->dimension(); |
---|
400 | <a name="l00532"></a>00532 } |
---|
401 | <a name="l00533"></a>00533 <span class="keywordtype">int</span> dimensionc() { |
---|
402 | <a name="l00534"></a>00534 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>; |
---|
403 | <a name="l00535"></a>00535 } |
---|
404 | <a name="l00536"></a>00536 |
---|
405 | <a name="l00546"></a>00546 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a30a0bceb948e287d497c578e371b1667" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &<span class="keyword">set</span> ); |
---|
406 | <a name="l00548"></a>00548 |
---|
407 | <a name="l00551"></a>00551 <span class="keywordtype">void</span> set_rvc ( <span class="keyword">const</span> RV &rvc0 ) { |
---|
408 | <a name="l00552"></a>00552 <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> = rvc0; |
---|
409 | <a name="l00553"></a>00553 } |
---|
410 | <a name="l00554"></a>00554 <span class="keywordtype">void</span> set_rv ( <span class="keyword">const</span> RV &rv0 ) { |
---|
411 | <a name="l00555"></a>00555 ep->set_rv ( rv0 ); |
---|
412 | <a name="l00556"></a>00556 } |
---|
413 | <a name="l00557"></a>00557 <span class="keywordtype">bool</span> isnamed() { |
---|
414 | <a name="l00558"></a>00558 <span class="keywordflow">return</span> ( ep->isnamed() ) && ( <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> == <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>._dsize() ); |
---|
415 | <a name="l00559"></a>00559 } |
---|
416 | <a name="l00561"></a>00561 }; |
---|
417 | <a name="l00562"></a>00562 SHAREDPTR ( mpdf ); |
---|
418 | <a name="l00563"></a>00563 |
---|
419 | <a name="l00565"></a>00565 <span class="keyword">template</span> <<span class="keyword">class</span> EPDF> |
---|
420 | <a name="l00566"></a><a class="code" href="classbdm_1_1mpdf__internal.html">00566</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf__internal.html" title="Mpdf with internal epdf that is modified by function condition.">mpdf_internal</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a> { |
---|
421 | <a name="l00567"></a>00567 <span class="keyword">protected</span> : |
---|
422 | <a name="l00569"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468">00569</a> EPDF <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>; |
---|
423 | <a name="l00570"></a>00570 <span class="keyword">public</span>: |
---|
424 | <a name="l00572"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f">00572</a> <a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f" title="constructor">mpdf_internal</a>() : <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>(), <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>() { |
---|
425 | <a name="l00573"></a>00573 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a> ); |
---|
426 | <a name="l00574"></a>00574 } |
---|
427 | <a name="l00575"></a>00575 |
---|
428 | <a name="l00578"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">00578</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( <span class="keyword">const</span> vec &cond ) { |
---|
429 | <a name="l00579"></a>00579 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> ); |
---|
430 | <a name="l00580"></a>00580 } |
---|
431 | <a name="l00581"></a>00581 |
---|
432 | <a name="l00583"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a">00583</a> EPDF& <a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a" title="access function to iepdf">e</a>() { |
---|
433 | <a name="l00584"></a>00584 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>; |
---|
434 | <a name="l00585"></a>00585 } |
---|
435 | <a name="l00586"></a>00586 |
---|
436 | <a name="l00588"></a>00588 vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">samplecond</a> ( <span class="keyword">const</span> vec &cond ); |
---|
437 | <a name="l00590"></a>00590 <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">evallogcond</a> ( <span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond ); |
---|
438 | <a name="l00592"></a>00592 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> ( <span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond ); |
---|
439 | <a name="l00594"></a>00594 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> ( <span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond ); |
---|
440 | <a name="l00596"></a>00596 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">samplecond_m</a> ( <span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N ); |
---|
441 | <a name="l00597"></a>00597 }; |
---|
442 | <a name="l00598"></a>00598 |
---|
443 | <a name="l00624"></a><a class="code" href="classbdm_1_1datalink.html">00624</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> { |
---|
444 | <a name="l00625"></a>00625 <span class="keyword">protected</span>: |
---|
445 | <a name="l00627"></a><a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c">00627</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>; |
---|
446 | <a name="l00628"></a>00628 |
---|
447 | <a name="l00630"></a><a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045">00630</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>; |
---|
448 | <a name="l00631"></a>00631 |
---|
449 | <a name="l00633"></a><a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb">00633</a> ivec <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>; |
---|
450 | <a name="l00634"></a>00634 |
---|
451 | <a name="l00635"></a>00635 <span class="keyword">public</span>: |
---|
452 | <a name="l00637"></a><a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2">00637</a> <a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a>() : <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> ( 0 ), <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> ( 0 ) { } |
---|
453 | <a name="l00638"></a>00638 |
---|
454 | <a name="l00640"></a><a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd">00640</a> <a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd" title="Convenience constructor.">datalink</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up ) { |
---|
455 | <a name="l00641"></a>00641 <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up ); |
---|
456 | <a name="l00642"></a>00642 } |
---|
457 | <a name="l00643"></a>00643 |
---|
458 | <a name="l00645"></a>00645 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up ); |
---|
459 | <a name="l00646"></a>00646 |
---|
460 | <a name="l00648"></a>00648 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keywordtype">int</span> ds, <span class="keywordtype">int</span> us, <span class="keyword">const</span> ivec &upind ); |
---|
461 | <a name="l00649"></a>00649 |
---|
462 | <a name="l00651"></a><a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5">00651</a> vec <a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &quot;Up&quot;.">pushdown</a> ( <span class="keyword">const</span> vec &val_up ) { |
---|
463 | <a name="l00652"></a>00652 vec tmp ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> ); |
---|
464 | <a name="l00653"></a>00653 <a class="code" href="classbdm_1_1datalink.html#abfc15c5e565d4dc1d0110deb5e8c3e6b" title="Get val for vector val_down from val of &quot;Up&quot;.">filldown</a> ( val_up, tmp ); |
---|
465 | <a name="l00654"></a>00654 <span class="keywordflow">return</span> tmp; |
---|
466 | <a name="l00655"></a>00655 } |
---|
467 | <a name="l00657"></a><a class="code" href="classbdm_1_1datalink.html#abfc15c5e565d4dc1d0110deb5e8c3e6b">00657</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#abfc15c5e565d4dc1d0110deb5e8c3e6b" title="Get val for vector val_down from val of &quot;Up&quot;.">filldown</a> ( <span class="keyword">const</span> vec &val_up, vec &val_down ) { |
---|
468 | <a name="l00658"></a>00658 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span> ); |
---|
469 | <a name="l00659"></a>00659 val_down = val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> ); |
---|
470 | <a name="l00660"></a>00660 } |
---|
471 | <a name="l00662"></a><a class="code" href="classbdm_1_1datalink.html#a610e966f2edb1fcd6a5b28267c571793">00662</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#a610e966f2edb1fcd6a5b28267c571793" title="Fill val of &quot;Up&quot; by my pieces.">pushup</a> ( vec &val_up, <span class="keyword">const</span> vec &val ) { |
---|
472 | <a name="l00663"></a>00663 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">"Wrong val"</span> ); |
---|
473 | <a name="l00664"></a>00664 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span> ); |
---|
474 | <a name="l00665"></a>00665 set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>, val ); |
---|
475 | <a name="l00666"></a>00666 } |
---|
476 | <a name="l00668"></a><a class="code" href="classbdm_1_1datalink.html#a340c5a253544a1dc2fd87932a5341c32">00668</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a340c5a253544a1dc2fd87932a5341c32" title="access functions">_upsize</a>() { |
---|
477 | <a name="l00669"></a>00669 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>; |
---|
478 | <a name="l00670"></a>00670 } |
---|
479 | <a name="l00672"></a><a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698">00672</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>() { |
---|
480 | <a name="l00673"></a>00673 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>; |
---|
481 | <a name="l00674"></a>00674 } |
---|
482 | <a name="l00675"></a>00675 }; |
---|
483 | <a name="l00676"></a>00676 |
---|
484 | <a name="l00679"></a><a class="code" href="classbdm_1_1datalink__part.html">00679</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> { |
---|
485 | <a name="l00680"></a>00680 <span class="keyword">protected</span>: |
---|
486 | <a name="l00682"></a><a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943">00682</a> ivec <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>; |
---|
487 | <a name="l00683"></a>00683 <span class="keyword">public</span>: |
---|
488 | <a name="l00684"></a>00684 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__part.html#a6cef1083755c27e4476501abe6f49dce" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up ); |
---|
489 | <a name="l00686"></a><a class="code" href="classbdm_1_1datalink__part.html#aaba9b673ef82584e1bc06cc7a32b0a59">00686</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__part.html#aaba9b673ef82584e1bc06cc7a32b0a59" title="Get val for vector val_down from val of &quot;Up&quot;.">filldown</a> ( <span class="keyword">const</span> vec &val_up, vec &val_down ) { |
---|
490 | <a name="l00687"></a>00687 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>, val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> ) ); |
---|
491 | <a name="l00688"></a>00688 } |
---|
492 | <a name="l00689"></a>00689 }; |
---|
493 | <a name="l00690"></a>00690 |
---|
494 | <a name="l00695"></a><a class="code" href="classbdm_1_1datalink__buffered.html">00695</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a> { |
---|
495 | <a name="l00696"></a>00696 <span class="keyword">protected</span>: |
---|
496 | <a name="l00698"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988">00698</a> vec <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>; |
---|
497 | <a name="l00700"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc">00700</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>; |
---|
498 | <a name="l00702"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7">00702</a> ivec <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>; |
---|
499 | <a name="l00704"></a><a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5">00704</a> ivec <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a>; |
---|
500 | <a name="l00706"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc">00706</a> ivec <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>; |
---|
501 | <a name="l00707"></a>00707 <span class="keyword">public</span>: |
---|
502 | <a name="l00708"></a>00708 |
---|
503 | <a name="l00709"></a>00709 <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a>() : <a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a>(), <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> ( 0 ), <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a> ( 0 ), <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a> ( 0 ) {}; |
---|
504 | <a name="l00711"></a><a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f">00711</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f" title="push current data to history">step</a> ( <span class="keyword">const</span> vec &val_up ) { |
---|
505 | <a name="l00712"></a>00712 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>.length() > 0 ) { |
---|
506 | <a name="l00713"></a>00713 <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>.shift_right ( 0, <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>.length() ); |
---|
507 | <a name="l00714"></a>00714 <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>.set_subvector ( 0, val_up(<a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>) ); |
---|
508 | <a name="l00715"></a>00715 } |
---|
509 | <a name="l00716"></a>00716 } |
---|
510 | <a name="l00718"></a><a class="code" href="classbdm_1_1datalink__buffered.html#ae665d66cb42862c1181645c438110a96">00718</a> vec <a class="code" href="classbdm_1_1datalink__buffered.html#ae665d66cb42862c1181645c438110a96" title="Get val for myself from val of &quot;Up&quot;.">pushdown</a> ( <span class="keyword">const</span> vec &val_up ) { |
---|
511 | <a name="l00719"></a>00719 vec tmp ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> ); |
---|
512 | <a name="l00720"></a>00720 <a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &quot;Up&quot;.">filldown</a> ( val_up, tmp ); |
---|
513 | <a name="l00721"></a>00721 <span class="keywordflow">return</span> tmp; |
---|
514 | <a name="l00722"></a>00722 } |
---|
515 | <a name="l00723"></a>00723 |
---|
516 | <a name="l00724"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f">00724</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &quot;Up&quot;.">filldown</a> ( <span class="keyword">const</span> vec &val_up, vec &val_down ) { |
---|
517 | <a name="l00725"></a>00725 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( val_down.length() >= <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>, <span class="stringliteral">"short val_down"</span> ); |
---|
518 | <a name="l00726"></a>00726 |
---|
519 | <a name="l00727"></a>00727 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>, val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> ) ); <span class="comment">// copy direct values</span> |
---|
520 | <a name="l00728"></a>00728 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>, <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> ( <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a> ) ); <span class="comment">// copy delayed values</span> |
---|
521 | <a name="l00729"></a>00729 } |
---|
522 | <a name="l00730"></a>00730 |
---|
523 | <a name="l00731"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a">00731</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up ) { |
---|
524 | <a name="l00732"></a>00732 <span class="comment">// create link between up and down</span> |
---|
525 | <a name="l00733"></a>00733 <a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">datalink_part::set_connection</a> ( rv, rv_up ); |
---|
526 | <a name="l00734"></a>00734 |
---|
527 | <a name="l00735"></a>00735 <span class="comment">// create rvs of history</span> |
---|
528 | <a name="l00736"></a>00736 <span class="comment">// we can store only what we get in rv_up - everything else is removed</span> |
---|
529 | <a name="l00737"></a>00737 ivec valid_ids = rv.<a class="code" href="classbdm_1_1RV.html#aa858d36d0264e1f1c89500531162fdf1" title="Find indices of self in another rv, ignore time,.">findself_ids</a> ( rv_up ); |
---|
530 | <a name="l00738"></a>00738 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rv_hist = rv.<a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( find ( valid_ids >= 0 ) ); <span class="comment">// select only rvs that are in rv_up</span> |
---|
531 | <a name="l00739"></a>00739 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rv_hist0 =rv_hist.remove_time(); <span class="comment">// these RVs will form history at time =0</span> |
---|
532 | <a name="l00740"></a>00740 <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a> = rv_hist0.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a>(rv_up); <span class="comment">// indeces of elements of rv_up to be copied</span> |
---|
533 | <a name="l00741"></a>00741 <span class="comment">// now we need to know what is needed from Up</span> |
---|
534 | <a name="l00742"></a>00742 rv_hist = rv_hist.<a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e" title="return rvs with expanded delayes and sorted in the order of:">expand_delayes</a>(); <span class="comment">// full regressor - including time 0</span> |
---|
535 | <a name="l00743"></a>00743 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>=rv_hist.<a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a>(rv_hist0); <span class="comment">// remove time 0</span> |
---|
536 | <a name="l00744"></a>00744 <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> = zeros ( <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ); |
---|
537 | <a name="l00745"></a>00745 |
---|
538 | <a name="l00746"></a>00746 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( rv, <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a>, <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a> ); |
---|
539 | <a name="l00747"></a>00747 |
---|
540 | <a name="l00748"></a>00748 <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>.length() + <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>.length(); |
---|
541 | <a name="l00749"></a>00749 <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> = <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>.length(); |
---|
542 | <a name="l00750"></a>00750 } |
---|
543 | <a name="l00752"></a><a class="code" href="classbdm_1_1datalink__buffered.html#ac95435dc0781d14529cddde9b2894b6d">00752</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#ac95435dc0781d14529cddde9b2894b6d" title="set history of variable given by rv1 to values of hist.">set_history</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& rv1, <span class="keyword">const</span> vec &hist0){ |
---|
544 | <a name="l00753"></a>00753 <a class="code" href="bdmerror_8h.html#a7a3399d182b8e3065532596e76f84849" title="Throw std::runtime_exception if t is not true.">bdm_assert</a>(rv1.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>()==hist0.length(),<span class="stringliteral">"hist is not compatible with given rv1"</span>); |
---|
545 | <a name="l00754"></a>00754 ivec ind_H; |
---|
546 | <a name="l00755"></a>00755 ivec ind_h0; |
---|
547 | <a name="l00756"></a>00756 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a>(rv1, ind_H, ind_h0); <span class="comment">// find indeces of rv in </span> |
---|
548 | <a name="l00757"></a>00757 set_subvector(<a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>, ind_H, hist0(ind_h0)); <span class="comment">// copy given hist to appropriate places</span> |
---|
549 | <a name="l00758"></a>00758 } |
---|
550 | <a name="l00759"></a>00759 }; |
---|
551 | <a name="l00760"></a>00760 |
---|
552 | <a name="l00762"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html">00762</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__2to1__buffered.html" title="buffered datalink from 2 vectors to 1">datalink_2to1_buffered</a> { |
---|
553 | <a name="l00763"></a>00763 <span class="keyword">protected</span>: |
---|
554 | <a name="l00764"></a>00764 <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> dl1; |
---|
555 | <a name="l00765"></a>00765 <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> dl2; |
---|
556 | <a name="l00766"></a>00766 <span class="keyword">public</span>: |
---|
557 | <a name="l00768"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef1441b4885ae4d8e95b3ff28e575364">00768</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef1441b4885ae4d8e95b3ff28e575364" title="set connection between RVs">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up1, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up2 ) { |
---|
558 | <a name="l00769"></a>00769 dl1.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up1 ); |
---|
559 | <a name="l00770"></a>00770 dl2.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up2 ); |
---|
560 | <a name="l00771"></a>00771 } |
---|
561 | <a name="l00772"></a>00772 <span class="keywordtype">void</span> filldown ( <span class="keyword">const</span> vec &val1, <span class="keyword">const</span> vec &val2, vec &val_down ) { |
---|
562 | <a name="l00773"></a>00773 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( val_down.length() >= dl1.<a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>() + dl2.<a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>(), <span class="stringliteral">"short val_down"</span> ); |
---|
563 | <a name="l00774"></a>00774 dl1.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &quot;Up&quot;.">filldown</a> ( val1, val_down ); |
---|
564 | <a name="l00775"></a>00775 dl2.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &quot;Up&quot;.">filldown</a> ( val2, val_down ); |
---|
565 | <a name="l00776"></a>00776 } |
---|
566 | <a name="l00777"></a>00777 <span class="keywordtype">void</span> step ( <span class="keyword">const</span> vec &dt, <span class="keyword">const</span> vec &ut ) { |
---|
567 | <a name="l00778"></a>00778 dl1.step ( dt ); |
---|
568 | <a name="l00779"></a>00779 dl2.step ( ut ); |
---|
569 | <a name="l00780"></a>00780 } |
---|
570 | <a name="l00781"></a>00781 }; |
---|
571 | <a name="l00782"></a>00782 |
---|
572 | <a name="l00783"></a>00783 |
---|
573 | <a name="l00784"></a>00784 |
---|
574 | <a name="l00786"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00786</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> { |
---|
575 | <a name="l00787"></a>00787 <span class="keyword">protected</span>: |
---|
576 | <a name="l00789"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9">00789</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>; |
---|
577 | <a name="l00790"></a>00790 |
---|
578 | <a name="l00792"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783">00792</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>; |
---|
579 | <a name="l00793"></a>00793 |
---|
580 | <a name="l00795"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc">00795</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>; |
---|
581 | <a name="l00796"></a>00796 |
---|
582 | <a name="l00797"></a>00797 <span class="keyword">public</span>: |
---|
583 | <a name="l00799"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6">00799</a> <a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6" title="Constructor.">datalink_m2e</a>() : <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ( 0 ) { } |
---|
584 | <a name="l00800"></a>00800 |
---|
585 | <a name="l00802"></a>00802 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#aadd918bf877c48714cff51ee4ad989b0" title="Set connection between vectors.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up ); |
---|
586 | <a name="l00803"></a>00803 |
---|
587 | <a name="l00805"></a>00805 vec <a class="code" href="classbdm_1_1datalink__m2e.html#a7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> ( <span class="keyword">const</span> vec &val_up ); |
---|
588 | <a name="l00806"></a>00806 |
---|
589 | <a name="l00808"></a>00808 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#ab29bc3c7bf2a1d87e77ccaa793d097d5" title="Copy corresponding values to Up.condition.">pushup_cond</a> ( vec &val_up, <span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond ); |
---|
590 | <a name="l00809"></a>00809 }; |
---|
591 | <a name="l00810"></a>00810 |
---|
592 | <a name="l00813"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00813</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html" title="DataLink is a connection between mpdf and its superordinate (Up) This class links...">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a> { |
---|
593 | <a name="l00814"></a>00814 <span class="keyword">protected</span>: |
---|
594 | <a name="l00816"></a><a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d">00816</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>; |
---|
595 | <a name="l00818"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5">00818</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>; |
---|
596 | <a name="l00819"></a>00819 |
---|
597 | <a name="l00820"></a>00820 <span class="keyword">public</span>: |
---|
598 | <a name="l00822"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287">00822</a> <a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {}; |
---|
599 | <a name="l00824"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4">00824</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc_up ) { |
---|
600 | <a name="l00825"></a>00825 <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">datalink_m2e::set_connection</a> ( rv, rvc, rv_up ); |
---|
601 | <a name="l00826"></a>00826 <span class="comment">//establish c2c connection</span> |
---|
602 | <a name="l00827"></a>00827 rvc.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a> ); |
---|
603 | <a name="l00828"></a>00828 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>.length() + <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>.length() == <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">"cond is not fully given"</span> ); |
---|
604 | <a name="l00829"></a>00829 } |
---|
605 | <a name="l00830"></a>00830 |
---|
606 | <a name="l00832"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90">00832</a> vec <a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &quot;Up&quot;.">get_cond</a> ( <span class="keyword">const</span> vec &val_up, <span class="keyword">const</span> vec &cond_up ) { |
---|
607 | <a name="l00833"></a>00833 vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ); |
---|
608 | <a name="l00834"></a>00834 set_subvector ( tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a> ) ); |
---|
609 | <a name="l00835"></a>00835 set_subvector ( tmp, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, cond_up ( <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a> ) ); |
---|
610 | <a name="l00836"></a>00836 <span class="keywordflow">return</span> tmp; |
---|
611 | <a name="l00837"></a>00837 } |
---|
612 | <a name="l00839"></a>00839 |
---|
613 | <a name="l00840"></a>00840 }; |
---|
614 | <a name="l00841"></a>00841 |
---|
615 | <a name="l00847"></a><a class="code" href="classbdm_1_1logger.html">00847</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> { |
---|
616 | <a name="l00848"></a>00848 <span class="keyword">protected</span>: |
---|
617 | <a name="l00850"></a><a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f">00850</a> Array<RV> <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>; |
---|
618 | <a name="l00852"></a><a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02">00852</a> Array<string> <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>; |
---|
619 | <a name="l00853"></a>00853 <span class="keyword">public</span>: |
---|
620 | <a name="l00855"></a><a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf">00855</a> <a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a>() : <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( 0 ), <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> ( 0 ) {} |
---|
621 | <a name="l00856"></a>00856 |
---|
622 | <a name="l00859"></a><a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">00859</a> <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keywordtype">string</span> prefix = <span class="stringliteral">""</span> ) { |
---|
623 | <a name="l00860"></a>00860 <span class="keywordtype">int</span> id; |
---|
624 | <a name="l00861"></a>00861 <span class="keywordflow">if</span> ( rv.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() > 0 ) { |
---|
625 | <a name="l00862"></a>00862 <span class="keywordtype">id</span> = <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length(); |
---|
626 | <a name="l00863"></a>00863 <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> = concat ( <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix ); <span class="comment">// diff</span> |
---|
627 | <a name="l00864"></a>00864 <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length ( <span class="keywordtype">id</span> + 1, <span class="keyword">true</span> ); |
---|
628 | <a name="l00865"></a>00865 <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( <span class="keywordtype">id</span> ) = rv; |
---|
629 | <a name="l00866"></a>00866 } <span class="keywordflow">else</span> { |
---|
630 | <a name="l00867"></a>00867 <span class="keywordtype">id</span> = -1; |
---|
631 | <a name="l00868"></a>00868 } |
---|
632 | <a name="l00869"></a>00869 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span> |
---|
633 | <a name="l00870"></a>00870 } |
---|
634 | <a name="l00871"></a>00871 |
---|
635 | <a name="l00873"></a><a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309">00873</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &v ) { |
---|
636 | <a name="l00874"></a>00874 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> ); |
---|
637 | <a name="l00875"></a>00875 }; |
---|
638 | <a name="l00877"></a><a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6">00877</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6" title="log this double">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &d ) { |
---|
639 | <a name="l00878"></a>00878 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> ); |
---|
640 | <a name="l00879"></a>00879 }; |
---|
641 | <a name="l00880"></a>00880 |
---|
642 | <a name="l00882"></a><a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99">00882</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99" title="Shifts storage position for another time step.">step</a>() { |
---|
643 | <a name="l00883"></a>00883 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemneted"</span> ); |
---|
644 | <a name="l00884"></a>00884 }; |
---|
645 | <a name="l00885"></a>00885 |
---|
646 | <a name="l00887"></a><a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d">00887</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {}; |
---|
647 | <a name="l00888"></a>00888 |
---|
648 | <a name="l00890"></a><a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc">00890</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {}; |
---|
649 | <a name="l00891"></a>00891 |
---|
650 | <a name="l00892"></a>00892 }; |
---|
651 | <a name="l00893"></a>00893 |
---|
652 | <a name="l00897"></a><a class="code" href="classbdm_1_1mepdf.html">00897</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a> { |
---|
653 | <a name="l00899"></a>00899 <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> iepdf; |
---|
654 | <a name="l00900"></a>00900 <span class="keyword">public</span>: |
---|
655 | <a name="l00902"></a><a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155">00902</a> <a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>() { } |
---|
656 | <a name="l00904"></a><a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c">00904</a> <a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c" title="Set internal shared pointer.">mepdf</a> ( <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> em ) { |
---|
657 | <a name="l00905"></a>00905 iepdf = em; |
---|
658 | <a name="l00906"></a>00906 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( *iepdf.<a class="code" href="classbdm_1_1shared__ptr.html#a37ebcfb6750dd7b5630f1d2354c07a96">get</a>() ); |
---|
659 | <a name="l00907"></a>00907 <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> = 0; |
---|
660 | <a name="l00908"></a>00908 } |
---|
661 | <a name="l00909"></a>00909 |
---|
662 | <a name="l00911"></a><a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e">00911</a> vec <a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e" title="empty">samplecond</a> ( <span class="keyword">const</span> vec &cond ) { |
---|
663 | <a name="l00912"></a>00912 <span class="keywordflow">return</span> iepdf->sample(); |
---|
664 | <a name="l00913"></a>00913 } |
---|
665 | <a name="l00914"></a><a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b">00914</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond ) { |
---|
666 | <a name="l00915"></a>00915 <span class="keywordflow">return</span> iepdf->evallog ( val ); |
---|
667 | <a name="l00916"></a>00916 } |
---|
668 | <a name="l00917"></a>00917 |
---|
669 | <a name="l00925"></a>00925 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#a27ef18a3e3b1b5de02739d1324bf25fb" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &<span class="keyword">set</span> ); |
---|
670 | <a name="l00926"></a>00926 }; |
---|
671 | <a name="l00927"></a>00927 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( mepdf ); |
---|
672 | <a name="l00928"></a>00928 SHAREDPTR ( mepdf ); |
---|
673 | <a name="l00929"></a>00929 |
---|
674 | <a name="l00931"></a>00931 RV get_composite_rv ( <span class="keyword">const</span> Array<shared_ptr<mpdf> > &mpdfs, <span class="keywordtype">bool</span> checkoverlap = <span class="keyword">false</span> ); |
---|
675 | <a name="l00932"></a>00932 |
---|
676 | <a name="l00948"></a><a class="code" href="classbdm_1_1DS.html">00948</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> { |
---|
677 | <a name="l00949"></a>00949 <span class="keyword">protected</span>: |
---|
678 | <a name="l00951"></a><a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9">00951</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a>; |
---|
679 | <a name="l00953"></a><a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983">00953</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>; |
---|
680 | <a name="l00955"></a><a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd">00955</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd" title="size of output">ytsize</a>; |
---|
681 | <a name="l00957"></a><a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec">00957</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>; |
---|
682 | <a name="l00959"></a><a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702">00959</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span> |
---|
683 | <a name="l00961"></a><a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995">00961</a> <span class="comment"></span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>; <span class="comment">//</span> |
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684 | <a name="l00963"></a><a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867">00963</a> <span class="comment"></span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut; |
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685 | <a name="l00964"></a>00964 <span class="keyword">public</span>: |
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686 | <a name="l00966"></a><a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a">00966</a> <a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() : <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>(),<a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>() {}; |
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687 | <a name="l00967"></a>00967 |
---|
688 | <a name="l00969"></a><a class="code" href="classbdm_1_1DS.html#a76d11928675f276f805655ae2a05d773">00969</a> <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#a76d11928675f276f805655ae2a05d773" title="Returns maximum number of provided data, by default it is set to maximum allowed...">max_length</a>() {<span class="keywordflow">return</span> std::numeric_limits< int >::max();} |
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689 | <a name="l00971"></a><a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba">00971</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &dt ) { |
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690 | <a name="l00972"></a>00972 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"abstract class"</span> ); |
---|
691 | <a name="l00973"></a>00973 } |
---|
692 | <a name="l00975"></a><a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832">00975</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a> ( vec &dt, <span class="keyword">const</span> ivec &indeces ) { |
---|
693 | <a name="l00976"></a>00976 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"abstract class"</span> ); |
---|
694 | <a name="l00977"></a>00977 } |
---|
695 | <a name="l00978"></a>00978 |
---|
696 | <a name="l00980"></a><a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a">00980</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> ( vec &ut ) { |
---|
697 | <a name="l00981"></a>00981 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"abstract class"</span> ); |
---|
698 | <a name="l00982"></a>00982 } |
---|
699 | <a name="l00983"></a>00983 |
---|
700 | <a name="l00985"></a><a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d">00985</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d" title="Accepts action variables at specific indeces.">write</a> ( vec &ut, <span class="keyword">const</span> ivec &indeces ) { |
---|
701 | <a name="l00986"></a>00986 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"abstract class"</span> ); |
---|
702 | <a name="l00987"></a>00987 } |
---|
703 | <a name="l00988"></a>00988 |
---|
704 | <a name="l00990"></a>00990 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a9a14c64d881e838ddc3a5617ee8a973b" title="Moves from to , i.e. perfroms the actions and reads response of the system.">step</a>() = 0; |
---|
705 | <a name="l00991"></a>00991 |
---|
706 | <a name="l00993"></a><a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e">00993</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L ) { |
---|
707 | <a name="l00994"></a>00994 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> == <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <span class="stringliteral">"invalid DS: dtsize ("</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> ) + <span class="stringliteral">") different from Drv "</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) ); |
---|
708 | <a name="l00995"></a>00995 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> == <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <span class="stringliteral">"invalid DS: utsize ("</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> ) + <span class="stringliteral">") different from Urv "</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) ); |
---|
709 | <a name="l00996"></a>00996 |
---|
710 | <a name="l00997"></a>00997 <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a> = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <span class="stringliteral">""</span> ); |
---|
711 | <a name="l00998"></a>00998 L_ut = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">""</span> ); |
---|
712 | <a name="l00999"></a>00999 } |
---|
713 | <a name="l01001"></a><a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf">01001</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L ) { |
---|
714 | <a name="l01002"></a>01002 vec tmp ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() + <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ); |
---|
715 | <a name="l01003"></a>01003 <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( tmp ); |
---|
716 | <a name="l01004"></a>01004 <span class="comment">// d is first in getdata</span> |
---|
717 | <a name="l01005"></a>01005 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, tmp.left ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) ); |
---|
718 | <a name="l01006"></a>01006 <span class="comment">// u follows after d in getdata</span> |
---|
719 | <a name="l01007"></a>01007 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( L_ut, tmp.mid ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) ); |
---|
720 | <a name="l01008"></a>01008 } |
---|
721 | <a name="l01010"></a><a class="code" href="classbdm_1_1DS.html#a069497b610296be053d862a2493be0ce">01010</a> <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1DS.html#a069497b610296be053d862a2493be0ce" title="access function">_drv</a>()<span class="keyword"> const </span>{ |
---|
722 | <a name="l01011"></a>01011 <span class="comment">// return concat (Drv, Urv);// why!!!</span> |
---|
723 | <a name="l01012"></a>01012 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>;<span class="comment">// why!!!</span> |
---|
724 | <a name="l01013"></a>01013 } |
---|
725 | <a name="l01015"></a><a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33">01015</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{ |
---|
726 | <a name="l01016"></a>01016 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; |
---|
727 | <a name="l01017"></a>01017 } |
---|
728 | <a name="l01019"></a><a class="code" href="classbdm_1_1DS.html#ac09878f86907329ac631a3df8755c558">01019</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1DS.html#ac09878f86907329ac631a3df8755c558" title="access function">_yrv</a>()<span class="keyword"> const </span>{ |
---|
729 | <a name="l01020"></a>01020 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>; |
---|
730 | <a name="l01021"></a>01021 } |
---|
731 | <a name="l01023"></a><a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc">01023</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc" title="set random variables">set_drv</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &yrv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &urv) { |
---|
732 | <a name="l01024"></a>01024 <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a> = yrv; |
---|
733 | <a name="l01025"></a>01025 <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = concat(yrv,urv); |
---|
734 | <a name="l01026"></a>01026 <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv; |
---|
735 | <a name="l01027"></a>01027 } |
---|
736 | <a name="l01028"></a>01028 }; |
---|
737 | <a name="l01029"></a>01029 |
---|
738 | <a name="l01051"></a><a class="code" href="classbdm_1_1BM.html">01051</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> { |
---|
739 | <a name="l01052"></a>01052 <span class="keyword">protected</span>: |
---|
740 | <a name="l01054"></a><a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed">01054</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; |
---|
741 | <a name="l01056"></a><a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a">01056</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; |
---|
742 | <a name="l01058"></a><a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee">01058</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>; |
---|
743 | <a name="l01059"></a>01059 <span class="keyword">public</span>: |
---|
744 | <a name="l01062"></a>01062 |
---|
745 | <a name="l01063"></a>01063 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>() : <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( 0 ), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( true ), <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 4 ), <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 4 ) { |
---|
746 | <a name="l01064"></a>01064 <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> = -1;<span class="comment">/*empty IDs*/</span> |
---|
747 | <a name="l01065"></a>01065 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> = 0; |
---|
748 | <a name="l01066"></a>01066 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) = 1; <span class="comment">/*log only mean*/</span> |
---|
749 | <a name="l01067"></a>01067 }; |
---|
750 | <a name="l01068"></a>01068 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &B ) : <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ( B.<a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( B.<a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( B.<a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ) {} |
---|
751 | <a name="l01071"></a><a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">01071</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">_copy_</a>()<span class="keyword"> const </span>{ |
---|
752 | <a name="l01072"></a>01072 <span class="keywordflow">return</span> NULL; |
---|
753 | <a name="l01073"></a>01073 }; |
---|
754 | <a name="l01075"></a>01075 |
---|
755 | <a name="l01078"></a>01078 |
---|
756 | <a name="l01082"></a>01082 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> ( <span class="keyword">const</span> vec &dt ) = 0; |
---|
757 | <a name="l01084"></a>01084 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> ( <span class="keyword">const</span> mat &Dt ); |
---|
758 | <a name="l01087"></a><a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">01087</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( <span class="keyword">const</span> vec &dt )<span class="keyword"> const </span>{ |
---|
759 | <a name="l01088"></a>01088 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> ); |
---|
760 | <a name="l01089"></a>01089 <span class="keywordflow">return</span> 0.0; |
---|
761 | <a name="l01090"></a>01090 } |
---|
762 | <a name="l01091"></a>01091 |
---|
763 | <a name="l01093"></a><a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae">01093</a> vec <a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> ( <span class="keyword">const</span> mat &dt )<span class="keyword"> const </span>{ |
---|
764 | <a name="l01094"></a>01094 vec tmp ( dt.cols() ); |
---|
765 | <a name="l01095"></a>01095 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i < dt.cols(); i++ ) { |
---|
766 | <a name="l01096"></a>01096 tmp ( i ) = <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( dt.get_col ( i ) ); |
---|
767 | <a name="l01097"></a>01097 } |
---|
768 | <a name="l01098"></a>01098 <span class="keywordflow">return</span> tmp; |
---|
769 | <a name="l01099"></a>01099 } |
---|
770 | <a name="l01100"></a>01100 |
---|
771 | <a name="l01102"></a><a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba">01102</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a>()<span class="keyword"> const </span>{ |
---|
772 | <a name="l01103"></a>01103 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> ); |
---|
773 | <a name="l01104"></a>01104 <span class="keywordflow">return</span> NULL; |
---|
774 | <a name="l01105"></a>01105 }; |
---|
775 | <a name="l01107"></a><a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912">01107</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs conditional density of 1-step ahead predictor .">predictor</a>()<span class="keyword"> const </span>{ |
---|
776 | <a name="l01108"></a>01108 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> ); |
---|
777 | <a name="l01109"></a>01109 <span class="keywordflow">return</span> NULL; |
---|
778 | <a name="l01110"></a>01110 }; |
---|
779 | <a name="l01112"></a>01112 |
---|
780 | <a name="l01117"></a>01117 |
---|
781 | <a name="l01119"></a><a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb">01119</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>; |
---|
782 | <a name="l01121"></a><a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33">01121</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{ |
---|
783 | <a name="l01122"></a>01122 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>; |
---|
784 | <a name="l01123"></a>01123 } |
---|
785 | <a name="l01124"></a>01124 |
---|
786 | <a name="l01126"></a><a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4">01126</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a> ( <span class="keyword">const</span> vec &val ) { |
---|
787 | <a name="l01127"></a>01127 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented!"</span> ); |
---|
788 | <a name="l01128"></a>01128 } |
---|
789 | <a name="l01129"></a>01129 |
---|
790 | <a name="l01131"></a>01131 |
---|
791 | <a name="l01132"></a>01132 |
---|
792 | <a name="l01135"></a>01135 |
---|
793 | <a name="l01136"></a>01136 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& _drv()<span class="keyword"> const </span>{ |
---|
794 | <a name="l01137"></a>01137 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; |
---|
795 | <a name="l01138"></a>01138 } |
---|
796 | <a name="l01139"></a>01139 <span class="keywordtype">void</span> set_drv ( <span class="keyword">const</span> RV &rv ) { |
---|
797 | <a name="l01140"></a>01140 <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> = rv; |
---|
798 | <a name="l01141"></a>01141 } |
---|
799 | <a name="l01142"></a>01142 <span class="keywordtype">void</span> set_rv ( <span class="keyword">const</span> RV &rv ) { |
---|
800 | <a name="l01143"></a>01143 <span class="keyword">const_cast<</span>epdf&<span class="keyword">></span> ( posterior() ).set_rv ( rv ); |
---|
801 | <a name="l01144"></a>01144 } |
---|
802 | <a name="l01145"></a>01145 <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{ |
---|
803 | <a name="l01146"></a>01146 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; |
---|
804 | <a name="l01147"></a>01147 } |
---|
805 | <a name="l01148"></a>01148 <span class="keywordtype">void</span> set_evalll ( <span class="keywordtype">bool</span> evl0 ) { |
---|
806 | <a name="l01149"></a>01149 <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> = evl0; |
---|
807 | <a name="l01150"></a>01150 } |
---|
808 | <a name="l01151"></a>01151 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf& posterior() <span class="keyword">const</span> = 0; |
---|
809 | <a name="l01153"></a>01153 |
---|
810 | <a name="l01156"></a>01156 |
---|
811 | <a name="l01158"></a><a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e">01158</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &quot;logbounds,logll&quot;.">set_options</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span> &opt ) { |
---|
812 | <a name="l01159"></a>01159 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) = 1; |
---|
813 | <a name="l01160"></a>01160 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">"logbounds"</span> ) != string::npos ) { |
---|
814 | <a name="l01161"></a>01161 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) = 1; |
---|
815 | <a name="l01162"></a>01162 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) = 1; |
---|
816 | <a name="l01163"></a>01163 } |
---|
817 | <a name="l01164"></a>01164 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">"logll"</span> ) != string::npos ) { |
---|
818 | <a name="l01165"></a>01165 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) = 1; |
---|
819 | <a name="l01166"></a>01166 } |
---|
820 | <a name="l01167"></a>01167 } |
---|
821 | <a name="l01169"></a><a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca">01169</a> ivec <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>; |
---|
822 | <a name="l01170"></a>01170 |
---|
823 | <a name="l01172"></a><a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207">01172</a> ivec <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>; |
---|
824 | <a name="l01174"></a><a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827">01174</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L, <span class="keyword">const</span> <span class="keywordtype">string</span> &name = <span class="stringliteral">""</span> ) { |
---|
825 | <a name="l01175"></a>01175 <span class="comment">// internal</span> |
---|
826 | <a name="l01176"></a>01176 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r; |
---|
827 | <a name="l01177"></a>01177 <span class="keywordflow">if</span> ( posterior().isnamed() ) { |
---|
828 | <a name="l01178"></a>01178 r = posterior().<a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>(); |
---|
829 | <a name="l01179"></a>01179 } <span class="keywordflow">else</span> { |
---|
830 | <a name="l01180"></a>01180 r = <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">"est"</span>, posterior().dimension() ); |
---|
831 | <a name="l01181"></a>01181 }; |
---|
832 | <a name="l01182"></a>01182 |
---|
833 | <a name="l01183"></a>01183 <span class="comment">// Add mean value</span> |
---|
834 | <a name="l01184"></a>01184 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">"mean_"</span> ); |
---|
835 | <a name="l01185"></a>01185 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">"lb_"</span> ); |
---|
836 | <a name="l01186"></a>01186 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">"ub_"</span> ); |
---|
837 | <a name="l01187"></a>01187 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">"ll"</span>, 1 ), name ); <span class="comment">//TODO: "local" RV</span> |
---|
838 | <a name="l01188"></a>01188 } |
---|
839 | <a name="l01189"></a>01189 <span class="keyword">virtual</span> <span class="keywordtype">void</span> logit ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L ) { |
---|
840 | <a name="l01190"></a>01190 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ), posterior().mean() ); |
---|
841 | <a name="l01191"></a>01191 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) || <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) ) { <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span> |
---|
842 | <a name="l01192"></a>01192 vec ub, lb; |
---|
843 | <a name="l01193"></a>01193 posterior().<a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( lb, ub ); |
---|
844 | <a name="l01194"></a>01194 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ), lb ); |
---|
845 | <a name="l01195"></a>01195 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ), ub ); |
---|
846 | <a name="l01196"></a>01196 } |
---|
847 | <a name="l01197"></a>01197 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) ) L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ); |
---|
848 | <a name="l01198"></a>01198 } |
---|
849 | <a name="l01200"></a><a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de">01200</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de" title="This method arrange instance properties according the data stored in the Setting...">from_setting</a> ( <span class="keyword">const</span> Setting &<span class="keyword">set</span> ) { |
---|
850 | <a name="l01201"></a>01201 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr<RV></a> r = UI::build<RV> ( <span class="keyword">set</span>, <span class="stringliteral">"drv"</span>, UI::optional ); |
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851 | <a name="l01202"></a>01202 <span class="keywordflow">if</span> ( r ) { |
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852 | <a name="l01203"></a>01203 set_drv ( *r ); |
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853 | <a name="l01204"></a>01204 } |
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854 | <a name="l01205"></a>01205 <span class="keywordtype">string</span> opt; |
---|
855 | <a name="l01206"></a>01206 <span class="keywordflow">if</span> ( !<a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a> ( opt, <span class="keyword">set</span>, <span class="stringliteral">"options"</span>, UI::optional ) ) { |
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856 | <a name="l01207"></a>01207 <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &quot;logbounds,logll&quot;.">set_options</a> ( opt ); |
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857 | <a name="l01208"></a>01208 } |
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858 | <a name="l01209"></a>01209 } |
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859 | <a name="l01210"></a>01210 |
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860 | <a name="l01211"></a>01211 }; |
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861 | <a name="l01212"></a>01212 |
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862 | <a name="l01213"></a>01213 <span class="keyword">typedef</span> Array<shared_ptr<epdf> > epdf_array; |
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863 | <a name="l01214"></a>01214 |
---|
864 | <a name="l01215"></a>01215 <span class="keyword">typedef</span> Array<shared_ptr<mpdf> > mpdf_array; |
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865 | <a name="l01216"></a>01216 |
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866 | <a name="l01217"></a>01217 <span class="keyword">template</span><<span class="keyword">class</span> EPDF> |
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867 | <a name="l01218"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930">01218</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">mpdf_internal<EPDF>::samplecond</a> ( <span class="keyword">const</span> vec &cond ) { |
---|
868 | <a name="l01219"></a>01219 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond ); |
---|
869 | <a name="l01220"></a>01220 vec temp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample(); |
---|
870 | <a name="l01221"></a>01221 <span class="keywordflow">return</span> temp; |
---|
871 | <a name="l01222"></a>01222 } |
---|
872 | <a name="l01223"></a>01223 |
---|
873 | <a name="l01224"></a>01224 <span class="keyword">template</span><<span class="keyword">class</span> EPDF> |
---|
874 | <a name="l01225"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823">01225</a> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">mpdf_internal<EPDF>::samplecond_m</a> ( <span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N ) { |
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875 | <a name="l01226"></a>01226 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond ); |
---|
876 | <a name="l01227"></a>01227 mat temp ( dimension(), N ); |
---|
877 | <a name="l01228"></a>01228 vec smp ( dimension() ); |
---|
878 | <a name="l01229"></a>01229 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i < N; i++ ) { |
---|
879 | <a name="l01230"></a>01230 smp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample(); |
---|
880 | <a name="l01231"></a>01231 temp.set_col ( i, smp ); |
---|
881 | <a name="l01232"></a>01232 } |
---|
882 | <a name="l01233"></a>01233 |
---|
883 | <a name="l01234"></a>01234 <span class="keywordflow">return</span> temp; |
---|
884 | <a name="l01235"></a>01235 } |
---|
885 | <a name="l01236"></a>01236 |
---|
886 | <a name="l01237"></a>01237 <span class="keyword">template</span><<span class="keyword">class</span> EPDF> |
---|
887 | <a name="l01238"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948">01238</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">mpdf_internal<EPDF>::evallogcond</a> ( <span class="keyword">const</span> vec &dt, <span class="keyword">const</span> vec &cond ) { |
---|
888 | <a name="l01239"></a>01239 <span class="keywordtype">double</span> tmp; |
---|
889 | <a name="l01240"></a>01240 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond ); |
---|
890 | <a name="l01241"></a>01241 tmp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog ( dt ); |
---|
891 | <a name="l01242"></a>01242 <span class="keywordflow">return</span> tmp; |
---|
892 | <a name="l01243"></a>01243 } |
---|
893 | <a name="l01244"></a>01244 |
---|
894 | <a name="l01245"></a>01245 <span class="keyword">template</span><<span class="keyword">class</span> EPDF> |
---|
895 | <a name="l01246"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c">01246</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal<EPDF>::evallogcond_m</a> ( <span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond ) { |
---|
896 | <a name="l01247"></a>01247 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond ); |
---|
897 | <a name="l01248"></a>01248 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m ( Dt ); |
---|
898 | <a name="l01249"></a>01249 } |
---|
899 | <a name="l01250"></a>01250 |
---|
900 | <a name="l01251"></a>01251 <span class="keyword">template</span><<span class="keyword">class</span> EPDF> |
---|
901 | <a name="l01252"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae82db07ce8af02f29cfd81e014edb3db">01252</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal<EPDF>::evallogcond_m</a> ( <span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond ) { |
---|
902 | <a name="l01253"></a>01253 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond ); |
---|
903 | <a name="l01254"></a>01254 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m ( Dt ); |
---|
904 | <a name="l01255"></a>01255 } |
---|
905 | <a name="l01256"></a>01256 |
---|
906 | <a name="l01257"></a>01257 }; <span class="comment">//namespace</span> |
---|
907 | <a name="l01258"></a>01258 <span class="preprocessor">#endif // BDMBASE_H</span> |
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908 | </pre></div></div> |
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909 | <hr size="1"/><address style="text-align: right;"><small>Generated on Sun Sep 13 22:40:39 2009 for mixpp by |
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910 | <a href="http://www.doxygen.org/index.html"> |
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911 | <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address> |
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912 | </body> |
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913 | </html> |
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