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67<h1>bdmbase.h</h1><a href="bdmbase_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001
68<a name="l00013"></a>00013 <span class="preprocessor">#ifndef BDMBASE_H</span>
69<a name="l00014"></a>00014 <span class="preprocessor"></span><span class="preprocessor">#define BDMBASE_H</span>
70<a name="l00015"></a>00015 <span class="preprocessor"></span>
71<a name="l00016"></a>00016 <span class="preprocessor">#include &lt;map&gt;</span>
72<a name="l00017"></a>00017
73<a name="l00018"></a>00018 <span class="preprocessor">#include &quot;../itpp_ext.h&quot;</span>
74<a name="l00019"></a>00019 <span class="preprocessor">#include &quot;../bdmroot.h&quot;</span>
75<a name="l00020"></a>00020 <span class="preprocessor">#include &quot;../shared_ptr.h&quot;</span>
76<a name="l00021"></a>00021 <span class="preprocessor">#include &quot;<a class="code" href="user__info_8h.html" title="UI (user info) class for loading/saving objects from/to configuration files. It is...">user_info.h</a>&quot;</span>
77<a name="l00022"></a>00022
78<a name="l00023"></a>00023 <span class="keyword">using namespace </span>libconfig;
79<a name="l00024"></a>00024 <span class="keyword">using namespace </span>itpp;
80<a name="l00025"></a>00025 <span class="keyword">using namespace </span>std;
81<a name="l00026"></a>00026
82<a name="l00027"></a>00027 <span class="keyword">namespace </span>bdm {
83<a name="l00029"></a><a class="code" href="classbdm_1_1str.html">00029</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> {
84<a name="l00030"></a>00030 <span class="keyword">public</span>:
85<a name="l00032"></a><a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0">00032</a>         ivec <a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a>;
86<a name="l00034"></a><a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a">00034</a>         ivec <a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a>;
87<a name="l00036"></a><a class="code" href="classbdm_1_1str.html#a7c6b9dccc6814d7bd1e8e2208a0d3f3f">00036</a>         <a class="code" href="classbdm_1_1str.html#a7c6b9dccc6814d7bd1e8e2208a0d3f3f" title="Default constructor.">str</a> ( ivec ids0, ivec times0 ) : <a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a> ( ids0 ), <a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a> ( times0 ) {
88<a name="l00037"></a>00037                 <a class="code" href="bdmerror_8h.html#a7a3399d182b8e3065532596e76f84849" title="Throw std::runtime_exception if t is not true.">bdm_assert</a> ( times0.length() == ids0.length(), <span class="stringliteral">&quot;Incompatible input&quot;</span> );
89<a name="l00038"></a>00038         };
90<a name="l00039"></a>00039 };
91<a name="l00040"></a>00040
92<a name="l00079"></a><a class="code" href="classbdm_1_1RV.html">00079</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
93<a name="l00080"></a>00080 <span class="keyword">private</span>:
94<a name="l00081"></a>00081         <span class="keyword">typedef</span> std::map&lt;string, int&gt; str2int_map;
95<a name="l00082"></a>00082
96<a name="l00084"></a>00084         <span class="keyword">static</span> ivec SIZES;
97<a name="l00086"></a>00086         <span class="keyword">static</span> Array&lt;string&gt; NAMES;
98<a name="l00087"></a>00087
99<a name="l00089"></a>00089         <span class="keyword">const</span> <span class="keyword">static</span> <span class="keywordtype">int</span> BUFFER_STEP;
100<a name="l00090"></a>00090
101<a name="l00092"></a>00092         <span class="keyword">static</span> str2int_map MAP;
102<a name="l00093"></a>00093
103<a name="l00094"></a>00094 <span class="keyword">public</span>:
104<a name="l00095"></a>00095
105<a name="l00096"></a>00096 <span class="keyword">protected</span>:
106<a name="l00098"></a><a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb">00098</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>;
107<a name="l00100"></a><a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385">00100</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>;
108<a name="l00102"></a><a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b">00102</a>         ivec <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>;
109<a name="l00104"></a><a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896">00104</a>         ivec <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>;
110<a name="l00105"></a>00105
111<a name="l00106"></a>00106 <span class="keyword">private</span>:
112<a name="l00107"></a>00107         <span class="keyword">enum</span> enum_dummy {dummy};
113<a name="l00108"></a>00108
114<a name="l00110"></a>00110         <span class="keywordtype">void</span> init ( <span class="keyword">const</span> Array&lt;std::string&gt; &amp;in_names, <span class="keyword">const</span> ivec &amp;in_sizes, <span class="keyword">const</span> ivec &amp;in_times );
115<a name="l00111"></a>00111         <span class="keywordtype">int</span> init ( <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;name, <span class="keywordtype">int</span> size );
116<a name="l00114"></a>00114         <span class="keyword">explicit</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> ( <span class="keyword">const</span> ivec &amp;ids0, enum_dummy dum ) : <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a> ( 0 ), <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a> ( ids0.<a class="code" href="classbdm_1_1RV.html#ae9ec8c3e756651ff352ab5e3d3acda4b" title="Number of named parts.">length</a>() ), <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( ids0 ), <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( zeros_i ( ids0.<a class="code" href="classbdm_1_1RV.html#ae9ec8c3e756651ff352ab5e3d3acda4b" title="Number of named parts.">length</a>() ) ) {
117<a name="l00115"></a>00115                 <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a> = <a class="code" href="classbdm_1_1RV.html#a39f9b44752376f07e346579b5ff8cbbd" title="Recount size of the corresponding data vector.">countsize</a>();
118<a name="l00116"></a>00116         }
119<a name="l00117"></a>00117 <span class="keyword">public</span>:
120<a name="l00120"></a>00120
121<a name="l00122"></a><a class="code" href="classbdm_1_1RV.html#a3fa35c2744e687c74f7742990e6aa264">00122</a>         <a class="code" href="classbdm_1_1RV.html#a3fa35c2744e687c74f7742990e6aa264" title="Full constructor.">RV</a> ( <span class="keyword">const</span> Array&lt;std::string&gt; &amp;in_names, <span class="keyword">const</span> ivec &amp;in_sizes, <span class="keyword">const</span> ivec &amp;in_times ) {
122<a name="l00123"></a>00123                 init ( in_names, in_sizes, in_times );
123<a name="l00124"></a>00124         }
124<a name="l00125"></a>00125
125<a name="l00127"></a><a class="code" href="classbdm_1_1RV.html#a381f5d963bb54efd4e76815dc93d50ce">00127</a>         <a class="code" href="classbdm_1_1RV.html#a381f5d963bb54efd4e76815dc93d50ce" title="Constructor with times=0.">RV</a> ( <span class="keyword">const</span> Array&lt;std::string&gt; &amp;in_names, <span class="keyword">const</span> ivec &amp;in_sizes ) {
126<a name="l00128"></a>00128                 init ( in_names, in_sizes, zeros_i ( in_names.length() ) );
127<a name="l00129"></a>00129         }
128<a name="l00130"></a>00130
129<a name="l00132"></a><a class="code" href="classbdm_1_1RV.html#acb47d71d82639ec7ddf2635b21aafd00">00132</a>         <a class="code" href="classbdm_1_1RV.html#acb47d71d82639ec7ddf2635b21aafd00" title="Constructor with sizes=1, times=0.">RV</a> ( <span class="keyword">const</span> Array&lt;std::string&gt; &amp;in_names ) {
130<a name="l00133"></a>00133                 init ( in_names, ones_i ( in_names.length() ), zeros_i ( in_names.length() ) );
131<a name="l00134"></a>00134         }
132<a name="l00135"></a>00135
133<a name="l00137"></a><a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412">00137</a>         <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a>() : <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a> ( 0 ), <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a> ( 0 ), <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( 0 ), <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( 0 ) {}
134<a name="l00138"></a>00138
135<a name="l00140"></a>00140         <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> ( <span class="keywordtype">string</span> name, <span class="keywordtype">int</span> sz, <span class="keywordtype">int</span> tm = 0 );
136<a name="l00141"></a>00141
137<a name="l00142"></a>00142         <span class="comment">// compiler-generated copy constructor is used</span>
138<a name="l00144"></a>00144 <span class="comment"></span>
139<a name="l00147"></a>00147
140<a name="l00149"></a>00149         <span class="keyword">friend</span> std::ostream &amp;<a class="code" href="classbdm_1_1RV.html#acad6f15535d10437f6690cb4492176a8" title="State output, e.g. for debugging.">operator&lt;&lt; </a>( std::ostream &amp;os, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv );
141<a name="l00150"></a>00150
142<a name="l00151"></a><a class="code" href="classbdm_1_1RV.html#ab361a9044e6a43102c4f873b9f566a0f">00151</a>         <span class="keywordtype">string</span> <a class="code" href="classbdm_1_1RV.html#ab361a9044e6a43102c4f873b9f566a0f" title="This method returns a basic info about the current instance.">to_string</a>() {ostringstream o; o &lt;&lt; <span class="keyword">this</span>; <span class="keywordflow">return</span> o.str();}
143<a name="l00152"></a>00152         
144<a name="l00154"></a><a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089">00154</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>()<span class="keyword"> const </span>{
145<a name="l00155"></a>00155                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>;
146<a name="l00156"></a>00156         }
147<a name="l00157"></a>00157
148<a name="l00159"></a><a class="code" href="classbdm_1_1RV.html#a26318eb90cb172ea86d1f45de9131c4e">00159</a>         <span class="keyword">const</span> ivec&amp; <a class="code" href="classbdm_1_1RV.html#a26318eb90cb172ea86d1f45de9131c4e" title="access function">_ids</a>()<span class="keyword"> const </span>{
149<a name="l00160"></a>00160                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>;
150<a name="l00161"></a>00161         }
151<a name="l00162"></a>00162
152<a name="l00164"></a>00164         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a39f9b44752376f07e346579b5ff8cbbd" title="Recount size of the corresponding data vector.">countsize</a>() <span class="keyword">const</span>;
153<a name="l00166"></a>00166         ivec <a class="code" href="classbdm_1_1RV.html#a412d43294bac38fa1804829e38fa4eaf" title="Vector of cumulative sizes of RV.">cumsizes</a>() <span class="keyword">const</span>;
154<a name="l00168"></a><a class="code" href="classbdm_1_1RV.html#ae9ec8c3e756651ff352ab5e3d3acda4b">00168</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#ae9ec8c3e756651ff352ab5e3d3acda4b" title="Number of named parts.">length</a>()<span class="keyword"> const </span>{
155<a name="l00169"></a>00169                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>;
156<a name="l00170"></a>00170         }
157<a name="l00171"></a>00171         <span class="keywordtype">int</span> id ( <span class="keywordtype">int</span> at )<span class="keyword"> const </span>{
158<a name="l00172"></a>00172                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at );
159<a name="l00173"></a>00173         }
160<a name="l00174"></a>00174         <span class="keywordtype">int</span> size ( <span class="keywordtype">int</span> at )<span class="keyword"> const </span>{
161<a name="l00175"></a>00175                 <span class="keywordflow">return</span> SIZES ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at ) );
162<a name="l00176"></a>00176         }
163<a name="l00177"></a>00177         <span class="keywordtype">int</span> time ( <span class="keywordtype">int</span> at )<span class="keyword"> const </span>{
164<a name="l00178"></a>00178                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( at );
165<a name="l00179"></a>00179         }
166<a name="l00180"></a>00180         std::string name ( <span class="keywordtype">int</span> at )<span class="keyword"> const </span>{
167<a name="l00181"></a>00181                 <span class="keywordflow">return</span> NAMES ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at ) );
168<a name="l00182"></a>00182         }
169<a name="l00184"></a><a class="code" href="classbdm_1_1RV.html#a9bae3443ded87dc9941d763e4c48cee0">00184</a>         std::string <a class="code" href="classbdm_1_1RV.html#a9bae3443ded87dc9941d763e4c48cee0" title="returns name of a scalar at position scalat, i.e. it can be in the middle of vector...">scalarname</a> ( <span class="keywordtype">int</span> scalat )<span class="keyword"> const </span>{
170<a name="l00185"></a>00185                 <a class="code" href="bdmerror_8h.html#a7a3399d182b8e3065532596e76f84849" title="Throw std::runtime_exception if t is not true.">bdm_assert</a>(scalat&lt;<a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>,<span class="stringliteral">&quot;Wrong input index&quot;</span>);
171<a name="l00186"></a>00186                 <span class="keywordtype">int</span> <span class="keywordtype">id</span>=0;
172<a name="l00187"></a>00187                 <span class="keywordtype">int</span> scalid=0;
173<a name="l00188"></a>00188                 <span class="keywordflow">while</span> (scalid+SIZES(<a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(<span class="keywordtype">id</span>))&lt;=scalat)  { scalid+=SIZES(<a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(<span class="keywordtype">id</span>)); <span class="keywordtype">id</span>++;};
174<a name="l00189"></a>00189                 <span class="comment">//now id is the id of variable of interest</span>
175<a name="l00190"></a>00190                 <span class="keywordflow">if</span> (size(<span class="keywordtype">id</span>)==1)
176<a name="l00191"></a>00191                         <span class="keywordflow">return</span>  NAMES ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( <span class="keywordtype">id</span> ) );
177<a name="l00192"></a>00192                 <span class="keywordflow">else</span>
178<a name="l00193"></a>00193                         <span class="keywordflow">return</span>  NAMES ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( <span class="keywordtype">id</span> ) )+ <span class="stringliteral">&quot;_&quot;</span> + num2str(scalat-scalid);
179<a name="l00194"></a>00194
180<a name="l00195"></a>00195         }
181<a name="l00196"></a>00196         <span class="keywordtype">void</span> set_time ( <span class="keywordtype">int</span> at, <span class="keywordtype">int</span> time0 ) {
182<a name="l00197"></a>00197                 <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( at ) = time0;
183<a name="l00198"></a>00198         }
184<a name="l00200"></a>00200
185<a name="l00203"></a>00203
186<a name="l00205"></a>00205         ivec <a class="code" href="classbdm_1_1RV.html#a1367055b2608ad9d50d01a2da6cec869" title="Find indices of self in another rv,.">findself</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 ) <span class="keyword">const</span>;
187<a name="l00207"></a>00207         ivec <a class="code" href="classbdm_1_1RV.html#aa858d36d0264e1f1c89500531162fdf1" title="Find indices of self in another rv, ignore time,.">findself_ids</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 ) <span class="keyword">const</span>;
188<a name="l00209"></a>00209         <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 ) <span class="keyword">const</span>;
189<a name="l00211"></a>00211         <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 );
190<a name="l00213"></a>00213         <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 ) <span class="keyword">const</span>;
191<a name="l00215"></a>00215         <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( <span class="keyword">const</span> ivec &amp;ind ) <span class="keyword">const</span>;
192<a name="l00216"></a>00216
193<a name="l00218"></a><a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966">00218</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>( <span class="keyword">const</span> ivec &amp;ind )<span class="keyword"> const </span>{
194<a name="l00219"></a>00219                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( ind );
195<a name="l00220"></a>00220         }
196<a name="l00221"></a>00221
197<a name="l00223"></a>00223         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>( <span class="keywordtype">int</span> di1, <span class="keywordtype">int</span> di2 ) <span class="keyword">const</span>;
198<a name="l00224"></a>00224
199<a name="l00226"></a>00226         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a> ( <span class="keywordtype">int</span> delta );
200<a name="l00228"></a>00228
201<a name="l00231"></a>00231         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> remove_time()<span class="keyword"> const </span>{
202<a name="l00232"></a>00232                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> ( unique ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ), dummy );
203<a name="l00233"></a>00233         }
204<a name="l00235"></a><a class="code" href="classbdm_1_1RV.html#a627222f49abc5d07e5e8aecac7708ee2">00235</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a627222f49abc5d07e5e8aecac7708ee2" title="create new RV from the current one with time shifted by given value">copy_t</a>(<span class="keywordtype">int</span> dt)<span class="keyword"> const </span>{
205<a name="l00236"></a>00236                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> tmp=*<span class="keyword">this</span>;
206<a name="l00237"></a>00237                 tmp.<a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a>(dt);
207<a name="l00238"></a>00238                 <span class="keywordflow">return</span> tmp;
208<a name="l00239"></a>00239         }
209<a name="l00241"></a><a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e">00241</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e" title="return rvs with expanded delayes and sorted in the order of: ">expand_delayes</a>()<span class="keyword"> const </span>{
210<a name="l00242"></a>00242                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rvt = this-&gt;remove_time(); <span class="comment">//rv at t=0</span>
211<a name="l00243"></a>00243                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> tmp = rvt;
212<a name="l00244"></a>00244                 <span class="keywordtype">int</span> td = <a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>();
213<a name="l00245"></a>00245                 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = -1; i &gt;= td; i-- ) {
214<a name="l00246"></a>00246                         rvt.<a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a> ( -1 );
215<a name="l00247"></a>00247                         tmp.<a class="code" href="classbdm_1_1RV.html#a87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a> ( rvt ); <span class="comment">//shift u1</span>
216<a name="l00248"></a>00248                 }
217<a name="l00249"></a>00249                 <span class="keywordflow">return</span> tmp;
218<a name="l00250"></a>00250         }
219<a name="l00252"></a>00252
220<a name="l00255"></a>00255
221<a name="l00257"></a>00257         <a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> <a class="code" href="classbdm_1_1RV.html#a8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes">tostr</a>() <span class="keyword">const</span>;
222<a name="l00260"></a>00260         ivec <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;crv ) <span class="keyword">const</span>;
223<a name="l00262"></a>00262         ivec <a class="code" href="classbdm_1_1RV.html#a0c6e3a1c54a612d2ea390c841aa5eb6f" title="same as dataind but this time crv should not be complete supperset of rv.">dataind_part</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;crv ) <span class="keyword">const</span>;
224<a name="l00265"></a>00265         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2, ivec &amp;selfi, ivec &amp;rv2i ) <span class="keyword">const</span>;
225<a name="l00267"></a><a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241">00267</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>()<span class="keyword"> const </span>{
226<a name="l00268"></a>00268                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>.length()&gt;0 ? min (<a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>) : 0;
227<a name="l00269"></a>00269         }
228<a name="l00271"></a>00271
229<a name="l00284"></a>00284         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#a6564bdd36b6845a51446a192d33e1194" title="UI for class RV (description of data vectors).">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> );
230<a name="l00285"></a>00285
231<a name="l00286"></a>00286         <span class="comment">// TODO dodelat void to_setting( Setting &amp;set ) const;</span>
232<a name="l00287"></a>00287
233<a name="l00289"></a>00289         <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#aab92b361335a644df654cf7cf7e5ffc0" title="Invalidate all named RVs. Use before initializing any RV instances, with care...">clear_all</a>();
234<a name="l00291"></a>00291         <span class="keywordtype">string</span> <a class="code" href="classbdm_1_1RV.html#a0743ab524c18d0c6553b29b043fd42bd" title="function for debugging RV related stuff">show_all</a>();
235<a name="l00292"></a>00292
236<a name="l00293"></a>00293 };
237<a name="l00294"></a>00294 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( RV );
238<a name="l00295"></a>00295 SHAREDPTR ( RV );
239<a name="l00296"></a>00296
240<a name="l00298"></a>00298 RV concat ( <span class="keyword">const</span> RV &amp;rv1, <span class="keyword">const</span> RV &amp;rv2 );
241<a name="l00299"></a>00299
242<a name="l00301"></a><a class="code" href="classbdm_1_1fnc.html">00301</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1fnc.html" title="Class representing function  of variable  represented by rv.">fnc</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
243<a name="l00302"></a>00302 <span class="keyword">protected</span>:
244<a name="l00304"></a><a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62">00304</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;
245<a name="l00305"></a>00305 <span class="keyword">public</span>:
246<a name="l00307"></a><a class="code" href="classbdm_1_1fnc.html#a65e9fb11f6cc7884018d8f229bcabbb7">00307</a>         <a class="code" href="classbdm_1_1fnc.html#a65e9fb11f6cc7884018d8f229bcabbb7" title="default constructor">fnc</a>() {};
247<a name="l00309"></a><a class="code" href="classbdm_1_1fnc.html#a6277b11d7fffc7ef8a2fa3e84ae5bad4">00309</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1fnc.html#a6277b11d7fffc7ef8a2fa3e84ae5bad4" title="function evaluates numerical value of  at  cond ">eval</a> ( <span class="keyword">const</span> vec &amp;cond ) {
248<a name="l00310"></a>00310                 <span class="keywordflow">return</span> vec ( 0 );
249<a name="l00311"></a>00311         };
250<a name="l00312"></a>00312
251<a name="l00314"></a><a class="code" href="classbdm_1_1fnc.html#a0786e40fade2663a70d654c1dda5d73e">00314</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1fnc.html#a0786e40fade2663a70d654c1dda5d73e" title="function substitutes given value into an appropriate position">condition</a> ( <span class="keyword">const</span> vec &amp;val ) {};
252<a name="l00315"></a>00315
253<a name="l00317"></a><a class="code" href="classbdm_1_1fnc.html#a083832294da9d1e40804158b979c4341">00317</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a083832294da9d1e40804158b979c4341" title="access function">dimension</a>()<span class="keyword"> const </span>{
254<a name="l00318"></a>00318                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;
255<a name="l00319"></a>00319         }
256<a name="l00320"></a>00320 };
257<a name="l00321"></a>00321
258<a name="l00322"></a>00322 <span class="keyword">class </span>mpdf;
259<a name="l00323"></a>00323
260<a name="l00325"></a>00325
261<a name="l00326"></a><a class="code" href="classbdm_1_1epdf.html">00326</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
262<a name="l00327"></a>00327 <span class="keyword">protected</span>:
263<a name="l00329"></a><a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce">00329</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;
264<a name="l00331"></a><a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8">00331</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;
265<a name="l00332"></a>00332
266<a name="l00333"></a>00333 <span class="keyword">public</span>:
267<a name="l00345"></a>00345         <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>() : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( 0 ), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>() {};
268<a name="l00346"></a>00346         <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &amp;e ) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( e.<a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ( e.<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) {};
269<a name="l00347"></a>00347         epdf ( <span class="keyword">const</span> RV &amp;rv0 ) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( rv0._dsize() ) {
270<a name="l00348"></a>00348                 <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( rv0 );
271<a name="l00349"></a>00349         };
272<a name="l00350"></a>00350         <span class="keywordtype">void</span> set_parameters ( <span class="keywordtype">int</span> dim0 ) {
273<a name="l00351"></a>00351                 <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> = dim0;
274<a name="l00352"></a>00352         }
275<a name="l00354"></a>00354
276<a name="l00357"></a>00357
277<a name="l00359"></a><a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b">00359</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample,  from density .">sample</a>()<span class="keyword"> const </span>{
278<a name="l00360"></a>00360                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;not implemented&quot;</span> );
279<a name="l00361"></a>00361                 <span class="keywordflow">return</span> vec();
280<a name="l00362"></a>00362         }
281<a name="l00363"></a>00363
282<a name="l00365"></a>00365         <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#ab4cf45fd83cc7573ede9fe1215256058" title="Returns N samples,  from density .">sample_m</a> ( <span class="keywordtype">int</span> N ) <span class="keyword">const</span>;
283<a name="l00366"></a>00366
284<a name="l00369"></a><a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">00369</a>         <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">evallog</a> ( <span class="keyword">const</span> vec &amp;val )<span class="keyword"> const </span>{
285<a name="l00370"></a>00370                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;not implemented&quot;</span> );
286<a name="l00371"></a>00371                 <span class="keywordflow">return</span> 0.0;
287<a name="l00372"></a>00372         }
288<a name="l00373"></a>00373
289<a name="l00375"></a>00375         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( <span class="keyword">const</span> mat &amp;Val ) <span class="keyword">const</span>;
290<a name="l00376"></a>00376
291<a name="l00378"></a>00378         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( <span class="keyword">const</span> Array&lt;vec&gt; &amp;Avec ) <span class="keyword">const</span>;
292<a name="l00379"></a>00379
293<a name="l00381"></a>00381         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;mpdf&gt;</a> <a class="code" href="classbdm_1_1epdf.html#a1499d35b79bce0cfa64fc5cafb9c03b2" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) <span class="keyword">const</span>;
294<a name="l00382"></a>00382
295<a name="l00384"></a>00384         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> <a class="code" href="classbdm_1_1epdf.html#aa84b05f5293cab2aeb4e07faffa60906" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) <span class="keyword">const</span>;
296<a name="l00385"></a>00385
297<a name="l00387"></a><a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75">00387</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>()<span class="keyword"> const </span>{
298<a name="l00388"></a>00388                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;not implemneted&quot;</span> );
299<a name="l00389"></a>00389                 <span class="keywordflow">return</span> vec();
300<a name="l00390"></a>00390         }
301<a name="l00391"></a>00391
302<a name="l00393"></a><a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c">00393</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()<span class="keyword"> const </span>{
303<a name="l00394"></a>00394                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;not implemneted&quot;</span> );
304<a name="l00395"></a>00395                 <span class="keywordflow">return</span> vec();
305<a name="l00396"></a>00396         }
306<a name="l00397"></a>00397
307<a name="l00399"></a><a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539">00399</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( vec &amp;lb, vec &amp;ub, <span class="keywordtype">double</span> percentage = 0.95 )<span class="keyword"> const </span>{
308<a name="l00400"></a>00400                 vec mea = <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>();
309<a name="l00401"></a>00401                 vec std = sqrt ( <a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>() );
310<a name="l00402"></a>00402                 lb = mea - 2 * std;
311<a name="l00403"></a>00403                 ub = mea + 2 * std;
312<a name="l00404"></a>00404         };
313<a name="l00406"></a>00406
314<a name="l00412"></a>00412
315<a name="l00414"></a><a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff">00414</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv0 ) {
316<a name="l00415"></a>00415                 <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> = rv0;
317<a name="l00416"></a>00416         }
318<a name="l00417"></a>00417
319<a name="l00419"></a><a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9">00419</a>         <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>()<span class="keyword"> const </span>{
320<a name="l00420"></a>00420                 <span class="keywordtype">bool</span> b = ( <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> == <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
321<a name="l00421"></a>00421                 <span class="keywordflow">return</span> b;
322<a name="l00422"></a>00422         }
323<a name="l00423"></a>00423
324<a name="l00425"></a><a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21">00425</a>         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>()<span class="keyword"> const </span>{
325<a name="l00426"></a>00426                 <span class="comment">//bdm_assert_debug ( isnamed(), &quot;&quot; );</span>
326<a name="l00427"></a>00427                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;
327<a name="l00428"></a>00428         }
328<a name="l00430"></a>00430
329<a name="l00433"></a>00433
330<a name="l00435"></a><a class="code" href="classbdm_1_1epdf.html#a7083a65f7b7a0d0d13b2c516bd2ec29c">00435</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>()<span class="keyword"> const </span>{
331<a name="l00436"></a>00436                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;
332<a name="l00437"></a>00437         }
333<a name="l00445"></a><a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725">00445</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ) {
334<a name="l00446"></a>00446                 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr&lt;RV&gt;</a> r = UI::build&lt;RV&gt; ( <span class="keyword">set</span>, <span class="stringliteral">&quot;rv&quot;</span>, UI::optional );
335<a name="l00447"></a>00447                 <span class="keywordflow">if</span> ( r ) {
336<a name="l00448"></a>00448                         <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( *r );
337<a name="l00449"></a>00449                 }
338<a name="l00450"></a>00450         }
339<a name="l00451"></a>00451
340<a name="l00452"></a>00452 };
341<a name="l00453"></a>00453 SHAREDPTR ( epdf );
342<a name="l00454"></a>00454
343<a name="l00456"></a><a class="code" href="classbdm_1_1mpdf.html">00456</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
344<a name="l00457"></a>00457 <span class="keyword">protected</span>:
345<a name="l00459"></a><a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6">00459</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;
346<a name="l00461"></a><a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288">00461</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;
347<a name="l00462"></a>00462 <span class="keyword">private</span>:
348<a name="l00464"></a>00464         <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* ep;
349<a name="l00465"></a>00465
350<a name="l00466"></a>00466 <span class="keyword">protected</span>:
351<a name="l00468"></a><a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e">00468</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &amp;iepdf ) {
352<a name="l00469"></a>00469                 ep = &amp;iepdf;
353<a name="l00470"></a>00470         }
354<a name="l00472"></a><a class="code" href="classbdm_1_1mpdf.html#a7555b377f8b5895c9b759c9628ee3e20">00472</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a7555b377f8b5895c9b759c9628ee3e20" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> *iepdfp ) {
355<a name="l00473"></a>00473                 ep = iepdfp;
356<a name="l00474"></a>00474         }
357<a name="l00475"></a>00475
358<a name="l00476"></a>00476 <span class="keyword">public</span>:
359<a name="l00479"></a>00479
360<a name="l00480"></a>00480         <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>() : <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ( 0 ), <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>(), ep ( NULL ) { }
361<a name="l00481"></a>00481
362<a name="l00482"></a>00482         mpdf ( <span class="keyword">const</span> mpdf &amp;m ) : <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ( m.<a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ), <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ( m.<a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ), ep ( m.ep ) { }
363<a name="l00484"></a>00484
364<a name="l00487"></a>00487
365<a name="l00489"></a><a class="code" href="classbdm_1_1mpdf.html#af0c1db6fcbb3aae2dd6123884457a367">00489</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#af0c1db6fcbb3aae2dd6123884457a367" title="Returns a sample from the density conditioned on cond, .">samplecond</a> ( <span class="keyword">const</span> vec &amp;cond ) {
366<a name="l00490"></a>00490                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
367<a name="l00491"></a>00491                 <span class="keywordflow">return</span> vec();
368<a name="l00492"></a>00492         }
369<a name="l00493"></a>00493
370<a name="l00495"></a>00495         <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf.html#a6e497d501331057309d2fddf63259d1a" title="Returns.">samplecond_m</a> ( <span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N );
371<a name="l00496"></a>00496
372<a name="l00498"></a><a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b">00498</a>         <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;cond ) {
373<a name="l00499"></a>00499                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
374<a name="l00500"></a>00500                 <span class="keywordflow">return</span> 0.0;
375<a name="l00501"></a>00501         }
376<a name="l00502"></a>00502
377<a name="l00504"></a><a class="code" href="classbdm_1_1mpdf.html#a0b0ed1ed663071bb7cf4a1349eb94fcb">00504</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#a0b0ed1ed663071bb7cf4a1349eb94fcb" title="Matrix version of evallogcond.">evallogcond_m</a> ( <span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) {
378<a name="l00505"></a>00505                 vec v ( Dt.cols() );
379<a name="l00506"></a>00506                 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i &lt; Dt.cols(); i++ ) {
380<a name="l00507"></a>00507                         v ( i ) = <a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( Dt.get_col ( i ), cond );
381<a name="l00508"></a>00508                 }
382<a name="l00509"></a>00509                 <span class="keywordflow">return</span> v;
383<a name="l00510"></a>00510         }
384<a name="l00511"></a>00511
385<a name="l00513"></a><a class="code" href="classbdm_1_1mpdf.html#a2a0d03756f59924fd038980ee60bd904">00513</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#a2a0d03756f59924fd038980ee60bd904" title="Array&amp;lt;vec&amp;gt; version of evallogcond.">evallogcond_m</a> ( <span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) {
386<a name="l00514"></a>00514                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
387<a name="l00515"></a>00515                 <span class="keywordflow">return</span> vec();
388<a name="l00516"></a>00516         }
389<a name="l00517"></a>00517
390<a name="l00520"></a>00520
391<a name="l00521"></a>00521         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; _rv()<span class="keyword"> const </span>{
392<a name="l00522"></a>00522                 <span class="keywordflow">return</span> ep-&gt;<a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();
393<a name="l00523"></a>00523         }
394<a name="l00524"></a>00524         <span class="keyword">const</span> RV&amp; _rvc()<span class="keyword"> const </span>{
395<a name="l00525"></a>00525                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;
396<a name="l00526"></a>00526         }
397<a name="l00527"></a>00527
398<a name="l00528"></a>00528         <span class="keywordtype">int</span> dimension()<span class="keyword"> const </span>{
399<a name="l00529"></a>00529                 <span class="keywordflow">return</span> ep-&gt;dimension();
400<a name="l00530"></a>00530         }
401<a name="l00531"></a>00531         <span class="keywordtype">int</span> dimensionc() {
402<a name="l00532"></a>00532                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;
403<a name="l00533"></a>00533         }
404<a name="l00534"></a>00534
405<a name="l00544"></a>00544         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a30a0bceb948e287d497c578e371b1667">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> );
406<a name="l00546"></a>00546
407<a name="l00549"></a>00549         <span class="keywordtype">void</span> set_rvc ( <span class="keyword">const</span> RV &amp;rvc0 ) {
408<a name="l00550"></a>00550                 <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> = rvc0;
409<a name="l00551"></a>00551         }
410<a name="l00552"></a>00552         <span class="keywordtype">void</span> set_rv ( <span class="keyword">const</span> RV &amp;rv0 ) {
411<a name="l00553"></a>00553                 ep-&gt;set_rv ( rv0 );
412<a name="l00554"></a>00554         }
413<a name="l00555"></a>00555         <span class="keywordtype">bool</span> isnamed() {
414<a name="l00556"></a>00556                 <span class="keywordflow">return</span> ( ep-&gt;isnamed() ) &amp;&amp; ( <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> == <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>._dsize() );
415<a name="l00557"></a>00557         }
416<a name="l00559"></a>00559 };
417<a name="l00560"></a>00560 SHAREDPTR ( mpdf );
418<a name="l00561"></a>00561
419<a name="l00563"></a>00563 <span class="keyword">template</span> &lt;<span class="keyword">class</span> EPDF&gt;
420<a name="l00564"></a><a class="code" href="classbdm_1_1mpdf__internal.html">00564</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf__internal.html" title="Mpdf with internal epdf that is modified by function condition.">mpdf_internal</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> {
421<a name="l00565"></a>00565 <span class="keyword">protected</span> :
422<a name="l00567"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468">00567</a>         EPDF <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>;
423<a name="l00568"></a>00568 <span class="keyword">public</span>:
424<a name="l00570"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f">00570</a>         <a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f" title="constructor">mpdf_internal</a>() : <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>(), <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>() {
425<a name="l00571"></a>00571                 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a> );
426<a name="l00572"></a>00572         }
427<a name="l00573"></a>00573
428<a name="l00576"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">00576</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> ( <span class="keyword">const</span> vec &amp;cond ) {
429<a name="l00577"></a>00577                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
430<a name="l00578"></a>00578         }
431<a name="l00579"></a>00579
432<a name="l00581"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a">00581</a>         EPDF&amp; <a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a" title="access function to iepdf">e</a>() {
433<a name="l00582"></a>00582                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>;
434<a name="l00583"></a>00583         }
435<a name="l00584"></a>00584
436<a name="l00586"></a>00586         vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">samplecond</a> ( <span class="keyword">const</span> vec &amp;cond );
437<a name="l00588"></a>00588         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">evallogcond</a> ( <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond );
438<a name="l00590"></a>00590         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> ( <span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond );
439<a name="l00592"></a>00592         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> ( <span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond );
440<a name="l00594"></a>00594         <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">samplecond_m</a> ( <span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N );
441<a name="l00595"></a>00595 };
442<a name="l00596"></a>00596
443<a name="l00622"></a><a class="code" href="classbdm_1_1datalink.html">00622</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> {
444<a name="l00623"></a>00623 <span class="keyword">protected</span>:
445<a name="l00625"></a><a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c">00625</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>;
446<a name="l00626"></a>00626
447<a name="l00628"></a><a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045">00628</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a>;
448<a name="l00629"></a>00629
449<a name="l00631"></a><a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb">00631</a>         ivec <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>;
450<a name="l00632"></a>00632
451<a name="l00633"></a>00633 <span class="keyword">public</span>:
452<a name="l00635"></a><a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2">00635</a>         <a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a>() : <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> ( 0 ), <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> ( 0 ) { }
453<a name="l00636"></a>00636
454<a name="l00638"></a><a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd">00638</a>         <a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd" title="Convenience constructor.">datalink</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up ) {
455<a name="l00639"></a>00639                 <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up );
456<a name="l00640"></a>00640         }
457<a name="l00641"></a>00641
458<a name="l00643"></a>00643         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up );
459<a name="l00644"></a>00644
460<a name="l00646"></a>00646         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keywordtype">int</span> ds, <span class="keywordtype">int</span> us, <span class="keyword">const</span> ivec &amp;upind );
461<a name="l00647"></a>00647
462<a name="l00649"></a><a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5">00649</a>         vec <a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &amp;quot;Up&amp;quot;.">pushdown</a> ( <span class="keyword">const</span> vec &amp;val_up ) {
463<a name="l00650"></a>00650                 vec tmp ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> );
464<a name="l00651"></a>00651                 <a class="code" href="classbdm_1_1datalink.html#ad49a14b65969f8fa1ae8ecab7ce77d6d" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val_up, tmp );
465<a name="l00652"></a>00652                 <span class="keywordflow">return</span> tmp;
466<a name="l00653"></a>00653         }
467<a name="l00655"></a><a class="code" href="classbdm_1_1datalink.html#ad49a14b65969f8fa1ae8ecab7ce77d6d">00655</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#ad49a14b65969f8fa1ae8ecab7ce77d6d" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <span class="keyword">const</span> vec &amp;val_up, vec &amp;val_down ) {
468<a name="l00656"></a>00656                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">&quot;Wrong val_up&quot;</span> );
469<a name="l00657"></a>00657                 val_down = val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> );
470<a name="l00658"></a>00658         }
471<a name="l00660"></a><a class="code" href="classbdm_1_1datalink.html#a736ec57cb8efce5f58b8f776a2d30d30">00660</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#a736ec57cb8efce5f58b8f776a2d30d30" title="Fill val of &amp;quot;Up&amp;quot; by my pieces.">pushup</a> ( vec &amp;val_up, <span class="keyword">const</span> vec &amp;val ) {
472<a name="l00661"></a>00661                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">&quot;Wrong val&quot;</span> );
473<a name="l00662"></a>00662                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">&quot;Wrong val_up&quot;</span> );
474<a name="l00663"></a>00663                 set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>, val );
475<a name="l00664"></a>00664         }
476<a name="l00666"></a><a class="code" href="classbdm_1_1datalink.html#a340c5a253544a1dc2fd87932a5341c32">00666</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a340c5a253544a1dc2fd87932a5341c32" title="access functions">_upsize</a>() {
477<a name="l00667"></a>00667                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a>;
478<a name="l00668"></a>00668         }
479<a name="l00670"></a><a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698">00670</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>() {
480<a name="l00671"></a>00671                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>;
481<a name="l00672"></a>00672         }
482<a name="l00673"></a>00673 };
483<a name="l00674"></a>00674
484<a name="l00677"></a><a class="code" href="classbdm_1_1datalink__part.html">00677</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> {
485<a name="l00678"></a>00678 <span class="keyword">protected</span>:
486<a name="l00680"></a><a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943">00680</a>         ivec <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>;
487<a name="l00681"></a>00681 <span class="keyword">public</span>:
488<a name="l00682"></a>00682         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__part.html#a6cef1083755c27e4476501abe6f49dce" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up );
489<a name="l00684"></a><a class="code" href="classbdm_1_1datalink__part.html#aaba9b673ef82584e1bc06cc7a32b0a59">00684</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__part.html#aaba9b673ef82584e1bc06cc7a32b0a59" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <span class="keyword">const</span> vec &amp;val_up, vec &amp;val_down ) {
490<a name="l00685"></a>00685                 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>, val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> ) );
491<a name="l00686"></a>00686         }
492<a name="l00687"></a>00687 };
493<a name="l00688"></a>00688
494<a name="l00693"></a><a class="code" href="classbdm_1_1datalink__buffered.html">00693</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a> {
495<a name="l00694"></a>00694 <span class="keyword">protected</span>:
496<a name="l00696"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988">00696</a>         vec <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>;
497<a name="l00698"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc">00698</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>;
498<a name="l00700"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7">00700</a>         ivec <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>;
499<a name="l00702"></a><a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5">00702</a>         ivec <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a>;
500<a name="l00704"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc">00704</a>         ivec <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>;
501<a name="l00705"></a>00705 <span class="keyword">public</span>:
502<a name="l00706"></a>00706
503<a name="l00707"></a>00707         <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a>() : <a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a>(), <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> ( 0 ), <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a> ( 0 ), <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a> ( 0 ) {};
504<a name="l00709"></a><a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f">00709</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f" title="push current data to history">step</a> ( <span class="keyword">const</span> vec &amp;val_up ) {
505<a name="l00710"></a>00710                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>.length() &gt; 0 ) {
506<a name="l00711"></a>00711                         <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>.shift_right ( 0, <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>.length() );
507<a name="l00712"></a>00712                   <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>.set_subvector ( 0, val_up(<a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>) );
508<a name="l00713"></a>00713                 }
509<a name="l00714"></a>00714         }
510<a name="l00716"></a><a class="code" href="classbdm_1_1datalink__buffered.html#ae665d66cb42862c1181645c438110a96">00716</a>         vec <a class="code" href="classbdm_1_1datalink__buffered.html#ae665d66cb42862c1181645c438110a96" title="Get val for myself from val of &amp;quot;Up&amp;quot;.">pushdown</a> ( <span class="keyword">const</span> vec &amp;val_up ) {
511<a name="l00717"></a>00717                 vec tmp ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> );
512<a name="l00718"></a>00718                 <a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val_up, tmp );
513<a name="l00719"></a>00719                 <span class="keywordflow">return</span> tmp;
514<a name="l00720"></a>00720         }
515<a name="l00721"></a>00721
516<a name="l00722"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f">00722</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <span class="keyword">const</span> vec &amp;val_up, vec &amp;val_down ) {
517<a name="l00723"></a>00723                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( val_down.length() &gt;= <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>, <span class="stringliteral">&quot;short val_down&quot;</span> );
518<a name="l00724"></a>00724
519<a name="l00725"></a>00725                 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>, val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> ) ); <span class="comment">// copy direct values</span>
520<a name="l00726"></a>00726                 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>, <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> ( <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a> ) ); <span class="comment">// copy delayed values</span>
521<a name="l00727"></a>00727         }
522<a name="l00728"></a>00728
523<a name="l00729"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a">00729</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up ) {
524<a name="l00730"></a>00730                 <span class="comment">// create link between up and down</span>
525<a name="l00731"></a>00731                 <a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">datalink_part::set_connection</a> ( rv, rv_up );
526<a name="l00732"></a>00732
527<a name="l00733"></a>00733                 <span class="comment">// create rvs of history</span>
528<a name="l00734"></a>00734                 <span class="comment">// we can store only what we get in rv_up - everything else is removed</span>
529<a name="l00735"></a>00735                 ivec valid_ids = rv.<a class="code" href="classbdm_1_1RV.html#aa858d36d0264e1f1c89500531162fdf1" title="Find indices of self in another rv, ignore time,.">findself_ids</a> ( rv_up );
530<a name="l00736"></a>00736                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rv_hist = rv.<a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( find ( valid_ids &gt;= 0 ) ); <span class="comment">// select only rvs that are in rv_up</span>
531<a name="l00737"></a>00737                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rv_hist0 =rv_hist.remove_time();  <span class="comment">// these RVs will form history at time =0</span>
532<a name="l00738"></a>00738                 <span class="comment">// now we need to know what is needed from Up</span>
533<a name="l00739"></a>00739                 rv_hist = rv_hist.<a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e" title="return rvs with expanded delayes and sorted in the order of: ">expand_delayes</a>(); <span class="comment">// full regressor - including time 0</span>
534<a name="l00740"></a>00740                 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>=rv_hist.<a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a>(rv_hist0);   <span class="comment">// remove time 0</span>
535<a name="l00741"></a>00741                 <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> = zeros ( <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
536<a name="l00742"></a>00742
537<a name="l00743"></a>00743                 <span class="comment">// decide if we need to copy val to history</span>
538<a name="l00744"></a>00744                 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() &gt;0) {
539<a name="l00745"></a>00745                         <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a> = rv_hist0.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a>(rv_up); <span class="comment">// indeces of elements of rv_up to be copied</span>
540<a name="l00746"></a>00746                 } <span class="comment">// else v2h_up is empty</span>
541<a name="l00747"></a>00747                 
542<a name="l00748"></a>00748                 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rv, <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a>, <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a> );
543<a name="l00749"></a>00749
544<a name="l00750"></a>00750                 <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>.length() + <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>.length();
545<a name="l00751"></a>00751                 <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> = <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>.length();
546<a name="l00752"></a>00752         }
547<a name="l00754"></a><a class="code" href="classbdm_1_1datalink__buffered.html#ac95435dc0781d14529cddde9b2894b6d">00754</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#ac95435dc0781d14529cddde9b2894b6d" title="set history of variable given by rv1 to values of hist.">set_history</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; rv1, <span class="keyword">const</span> vec &amp;hist0){
548<a name="l00755"></a>00755                 <a class="code" href="bdmerror_8h.html#a7a3399d182b8e3065532596e76f84849" title="Throw std::runtime_exception if t is not true.">bdm_assert</a>(rv1.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>()==hist0.length(),<span class="stringliteral">&quot;hist is not compatible with given rv1&quot;</span>);
549<a name="l00756"></a>00756                 ivec ind_H;
550<a name="l00757"></a>00757                 ivec ind_h0;
551<a name="l00758"></a>00758                 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a>(rv1, ind_H, ind_h0); <span class="comment">// find indeces of rv in </span>
552<a name="l00759"></a>00759                 set_subvector(<a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>, ind_H, hist0(ind_h0)); <span class="comment">// copy given hist to appropriate places</span>
553<a name="l00760"></a>00760         }
554<a name="l00761"></a>00761 };
555<a name="l00762"></a>00762
556<a name="l00764"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html">00764</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__2to1__buffered.html" title="buffered datalink from 2 vectors to 1">datalink_2to1_buffered</a> {
557<a name="l00765"></a>00765 <span class="keyword">protected</span>:
558<a name="l00767"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef99848172760c7d989b59063ca1bb55">00767</a>         <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef99848172760c7d989b59063ca1bb55" title="link 1st vector to down">dl1</a>;
559<a name="l00769"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#a2031ad6aeef42ad9ef10d73e7b8cc0f2">00769</a>         <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#a2031ad6aeef42ad9ef10d73e7b8cc0f2" title="link 2nd vector to down">dl2</a>;
560<a name="l00770"></a>00770 <span class="keyword">public</span>:
561<a name="l00772"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef1441b4885ae4d8e95b3ff28e575364">00772</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef1441b4885ae4d8e95b3ff28e575364" title="set connection between RVs">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up1, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up2 ) {
562<a name="l00773"></a>00773                 <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef99848172760c7d989b59063ca1bb55" title="link 1st vector to down">dl1</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up1 );
563<a name="l00774"></a>00774                 <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#a2031ad6aeef42ad9ef10d73e7b8cc0f2" title="link 2nd vector to down">dl2</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up2 );
564<a name="l00775"></a>00775         }
565<a name="l00777"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aee6ee8524a30aceac28bab01b9b4cb39">00777</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aee6ee8524a30aceac28bab01b9b4cb39" title="fill values of down from the values of the two up vectors">filldown</a> ( <span class="keyword">const</span> vec &amp;val1, <span class="keyword">const</span> vec &amp;val2, vec &amp;val_down ) {
566<a name="l00778"></a>00778                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( val_down.length() &gt;= <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef99848172760c7d989b59063ca1bb55" title="link 1st vector to down">dl1</a>.<a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>() + <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#a2031ad6aeef42ad9ef10d73e7b8cc0f2" title="link 2nd vector to down">dl2</a>.<a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>(), <span class="stringliteral">&quot;short val_down&quot;</span> );
567<a name="l00779"></a>00779                 <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef99848172760c7d989b59063ca1bb55" title="link 1st vector to down">dl1</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val1, val_down );
568<a name="l00780"></a>00780                 <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#a2031ad6aeef42ad9ef10d73e7b8cc0f2" title="link 2nd vector to down">dl2</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val2, val_down );
569<a name="l00781"></a>00781         }
570<a name="l00783"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#ab083becb2d0744d0346a0267d70ea475">00783</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#ab083becb2d0744d0346a0267d70ea475" title="update buffer">step</a> ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;ut ) {
571<a name="l00784"></a>00784                 <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef99848172760c7d989b59063ca1bb55" title="link 1st vector to down">dl1</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f" title="push current data to history">step</a> ( dt );
572<a name="l00785"></a>00785                 <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#a2031ad6aeef42ad9ef10d73e7b8cc0f2" title="link 2nd vector to down">dl2</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f" title="push current data to history">step</a> ( ut );
573<a name="l00786"></a>00786         }
574<a name="l00787"></a>00787 };
575<a name="l00788"></a>00788
576<a name="l00789"></a>00789
577<a name="l00790"></a>00790
578<a name="l00792"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00792</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> {
579<a name="l00793"></a>00793 <span class="keyword">protected</span>:
580<a name="l00795"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9">00795</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>;
581<a name="l00796"></a>00796
582<a name="l00798"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783">00798</a>         ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>;
583<a name="l00799"></a>00799
584<a name="l00801"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc">00801</a>         ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>;
585<a name="l00802"></a>00802
586<a name="l00803"></a>00803 <span class="keyword">public</span>:
587<a name="l00805"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6">00805</a>         <a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6" title="Constructor.">datalink_m2e</a>() : <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ( 0 ) { }
588<a name="l00806"></a>00806
589<a name="l00808"></a>00808         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#aadd918bf877c48714cff51ee4ad989b0" title="Set connection between vectors.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up );
590<a name="l00809"></a>00809
591<a name="l00811"></a>00811         vec <a class="code" href="classbdm_1_1datalink__m2e.html#a7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> ( <span class="keyword">const</span> vec &amp;val_up );
592<a name="l00812"></a>00812
593<a name="l00814"></a>00814         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#ab29bc3c7bf2a1d87e77ccaa793d097d5" title="Copy corresponding values to Up.condition.">pushup_cond</a> ( vec &amp;val_up, <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond );
594<a name="l00815"></a>00815 };
595<a name="l00816"></a>00816
596<a name="l00819"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00819</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a> {
597<a name="l00820"></a>00820 <span class="keyword">protected</span>:
598<a name="l00822"></a><a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d">00822</a>         ivec <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>;
599<a name="l00824"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5">00824</a>         ivec <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>;
600<a name="l00825"></a>00825
601<a name="l00826"></a>00826 <span class="keyword">public</span>:
602<a name="l00828"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287">00828</a>         <a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {};
603<a name="l00830"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4">00830</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc_up ) {
604<a name="l00831"></a>00831                 <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">datalink_m2e::set_connection</a> ( rv, rvc, rv_up );
605<a name="l00832"></a>00832                 <span class="comment">//establish c2c connection</span>
606<a name="l00833"></a>00833                 rvc.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a> );
607<a name="l00834"></a>00834                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>.length() + <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>.length() == <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">&quot;cond is not fully given&quot;</span> );
608<a name="l00835"></a>00835         }
609<a name="l00836"></a>00836
610<a name="l00838"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90">00838</a>         vec <a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &amp;quot;Up&amp;quot;.">get_cond</a> ( <span class="keyword">const</span> vec &amp;val_up, <span class="keyword">const</span> vec &amp;cond_up ) {
611<a name="l00839"></a>00839                 vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> );
612<a name="l00840"></a>00840                 set_subvector ( tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a> ) );
613<a name="l00841"></a>00841                 set_subvector ( tmp, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, cond_up ( <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a> ) );
614<a name="l00842"></a>00842                 <span class="keywordflow">return</span> tmp;
615<a name="l00843"></a>00843         }
616<a name="l00845"></a>00845
617<a name="l00846"></a>00846 };
618<a name="l00847"></a>00847
619<a name="l00853"></a><a class="code" href="classbdm_1_1logger.html">00853</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
620<a name="l00854"></a>00854 <span class="keyword">protected</span>:
621<a name="l00856"></a><a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f">00856</a>         Array&lt;RV&gt; <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>;
622<a name="l00858"></a><a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02">00858</a>         Array&lt;string&gt; <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>;
623<a name="l00859"></a>00859 <span class="keyword">public</span>:
624<a name="l00861"></a><a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf">00861</a>         <a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a>() : <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( 0 ), <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> ( 0 ) {}
625<a name="l00862"></a>00862
626<a name="l00865"></a><a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">00865</a>         <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keywordtype">string</span> prefix = <span class="stringliteral">&quot;&quot;</span> ) {
627<a name="l00866"></a>00866                 <span class="keywordtype">int</span> id;
628<a name="l00867"></a>00867                 <span class="keywordflow">if</span> ( rv.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() &gt; 0 ) {
629<a name="l00868"></a>00868                         <span class="keywordtype">id</span> = <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length();
630<a name="l00869"></a>00869                         <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> = concat ( <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix ); <span class="comment">// diff</span>
631<a name="l00870"></a>00870                         <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length ( <span class="keywordtype">id</span> + 1, <span class="keyword">true</span> );
632<a name="l00871"></a>00871                         <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( <span class="keywordtype">id</span> ) = rv;
633<a name="l00872"></a>00872                 } <span class="keywordflow">else</span> {
634<a name="l00873"></a>00873                         <span class="keywordtype">id</span> = -1;
635<a name="l00874"></a>00874                 }
636<a name="l00875"></a>00875                 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span>
637<a name="l00876"></a>00876         }
638<a name="l00877"></a>00877
639<a name="l00879"></a><a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309">00879</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &amp;v ) {
640<a name="l00880"></a>00880                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
641<a name="l00881"></a>00881         };
642<a name="l00883"></a><a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6">00883</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6" title="log this double">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &amp;d ) {
643<a name="l00884"></a>00884                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
644<a name="l00885"></a>00885         };
645<a name="l00886"></a>00886
646<a name="l00888"></a><a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99">00888</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99" title="Shifts storage position for another time step.">step</a>() {
647<a name="l00889"></a>00889                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemneted&quot;</span> );
648<a name="l00890"></a>00890         };
649<a name="l00891"></a>00891
650<a name="l00893"></a><a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d">00893</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {};
651<a name="l00894"></a>00894
652<a name="l00896"></a><a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc">00896</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {};
653<a name="l00897"></a>00897
654<a name="l00898"></a>00898 };
655<a name="l00899"></a>00899
656<a name="l00903"></a><a class="code" href="classbdm_1_1mepdf.html">00903</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> {
657<a name="l00905"></a>00905         <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> iepdf;
658<a name="l00906"></a>00906 <span class="keyword">public</span>:
659<a name="l00908"></a><a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155">00908</a>         <a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>() { }
660<a name="l00910"></a><a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c">00910</a>         <a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c" title="Set internal shared pointer.">mepdf</a> ( <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> em ) {
661<a name="l00911"></a>00911                 iepdf = em;
662<a name="l00912"></a>00912                 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( *iepdf.<a class="code" href="classbdm_1_1shared__ptr.html#a37ebcfb6750dd7b5630f1d2354c07a96">get</a>() );
663<a name="l00913"></a>00913                 <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> = 0;
664<a name="l00914"></a>00914         }
665<a name="l00915"></a>00915
666<a name="l00917"></a><a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e">00917</a>         vec <a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e" title="empty">samplecond</a> ( <span class="keyword">const</span> vec &amp;cond ) {
667<a name="l00918"></a>00918                 <span class="keywordflow">return</span> iepdf-&gt;sample();
668<a name="l00919"></a>00919         }
669<a name="l00920"></a><a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b">00920</a>         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond ) {
670<a name="l00921"></a>00921                 <span class="keywordflow">return</span> iepdf-&gt;evallog ( val );
671<a name="l00922"></a>00922         }
672<a name="l00923"></a>00923
673<a name="l00931"></a>00931         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#a27ef18a3e3b1b5de02739d1324bf25fb">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> );
674<a name="l00932"></a>00932 };
675<a name="l00933"></a>00933 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( mepdf );
676<a name="l00934"></a>00934 SHAREDPTR ( mepdf );
677<a name="l00935"></a>00935
678<a name="l00937"></a>00937 RV get_composite_rv ( <span class="keyword">const</span> Array&lt;shared_ptr&lt;mpdf&gt; &gt; &amp;mpdfs, <span class="keywordtype">bool</span> checkoverlap = <span class="keyword">false</span> );
679<a name="l00938"></a>00938
680<a name="l00954"></a><a class="code" href="classbdm_1_1DS.html">00954</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
681<a name="l00955"></a>00955 <span class="keyword">protected</span>:
682<a name="l00957"></a><a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9">00957</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a>;
683<a name="l00959"></a><a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983">00959</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>;
684<a name="l00961"></a><a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd">00961</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd" title="size of output">ytsize</a>;
685<a name="l00963"></a><a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec">00963</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>;
686<a name="l00965"></a><a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702">00965</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span>
687<a name="l00967"></a><a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995">00967</a> <span class="comment"></span>                <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>; <span class="comment">//</span>
688<a name="l00969"></a><a class="code" href="classbdm_1_1DS.html#a13c89cfedbd132742534641ed69391d4">00969</a> <span class="comment"></span>        ivec <a class="code" href="classbdm_1_1DS.html#a13c89cfedbd132742534641ed69391d4" title="Remember its own index in Logger L, [0=dt, 1=ut].">LIDs</a>;
689<a name="l00970"></a>00970 <span class="keyword">public</span>:
690<a name="l00972"></a><a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a">00972</a>                 <a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() : <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>(),<a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>(), <a class="code" href="classbdm_1_1DS.html#a13c89cfedbd132742534641ed69391d4" title="Remember its own index in Logger L, [0=dt, 1=ut].">LIDs</a>(2) {};
691<a name="l00973"></a>00973
692<a name="l00975"></a><a class="code" href="classbdm_1_1DS.html#a76d11928675f276f805655ae2a05d773">00975</a>         <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#a76d11928675f276f805655ae2a05d773" title="Returns maximum number of provided data, by default it is set to maximum allowed...">max_length</a>() {<span class="keywordflow">return</span> std::numeric_limits&lt; int &gt;::max();}
693<a name="l00977"></a><a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba">00977</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt ) {
694<a name="l00978"></a>00978                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> );
695<a name="l00979"></a>00979         }
696<a name="l00981"></a><a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832">00981</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a> ( vec &amp;dt, <span class="keyword">const</span> ivec &amp;indeces ) {
697<a name="l00982"></a>00982                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> );
698<a name="l00983"></a>00983         }
699<a name="l00984"></a>00984
700<a name="l00986"></a><a class="code" href="classbdm_1_1DS.html#a19ed7794819b195e9d9adbd29da999bd">00986</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a19ed7794819b195e9d9adbd29da999bd" title="Accepts action variable and schedule it for application.">write</a> (<span class="keyword">const</span> vec &amp;ut ) {
701<a name="l00987"></a>00987                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> );
702<a name="l00988"></a>00988         }
703<a name="l00989"></a>00989
704<a name="l00991"></a><a class="code" href="classbdm_1_1DS.html#aa5a8d2a5125cda38fd191c246129ece6">00991</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#aa5a8d2a5125cda38fd191c246129ece6" title="Accepts action variables at specific indeces.">write</a> (<span class="keyword">const</span> vec &amp;ut, <span class="keyword">const</span> ivec &amp;indeces ) {
705<a name="l00992"></a>00992                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> );
706<a name="l00993"></a>00993         }
707<a name="l00994"></a>00994
708<a name="l00996"></a><a class="code" href="classbdm_1_1DS.html#a4df78b21d352013d8804a8dda860b7ea">00996</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a4df78b21d352013d8804a8dda860b7ea" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>()
709<a name="l00997"></a>00997         {
710<a name="l00998"></a>00998                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> );
711<a name="l00999"></a>00999         }
712<a name="l01000"></a>01000
713<a name="l01002"></a><a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e">01002</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
714<a name="l01003"></a>01003                 <a class="code" href="bdmerror_8h.html#a7a3399d182b8e3065532596e76f84849" title="Throw std::runtime_exception if t is not true.">bdm_assert</a> ( <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> == <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <span class="stringliteral">&quot;invalid DS: dtsize (&quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> ) + <span class="stringliteral">&quot;) different from Drv &quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
715<a name="l01004"></a>01004                 <a class="code" href="bdmerror_8h.html#a7a3399d182b8e3065532596e76f84849" title="Throw std::runtime_exception if t is not true.">bdm_assert</a> ( <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> == <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <span class="stringliteral">&quot;invalid DS: utsize (&quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> ) + <span class="stringliteral">&quot;) different from Urv &quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
716<a name="l01005"></a>01005
717<a name="l01006"></a>01006                 <a class="code" href="classbdm_1_1DS.html#a13c89cfedbd132742534641ed69391d4" title="Remember its own index in Logger L, [0=dt, 1=ut].">LIDs</a>(0) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <span class="stringliteral">&quot;&quot;</span> );
718<a name="l01007"></a>01007                 <a class="code" href="classbdm_1_1DS.html#a13c89cfedbd132742534641ed69391d4" title="Remember its own index in Logger L, [0=dt, 1=ut].">LIDs</a>(1) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">&quot;&quot;</span> );
719<a name="l01008"></a>01008         }
720<a name="l01010"></a><a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf">01010</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
721<a name="l01011"></a>01011                 vec tmp ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() + <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
722<a name="l01012"></a>01012                 <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( tmp );
723<a name="l01013"></a>01013                 <span class="comment">// d is first in getdata</span>
724<a name="l01014"></a>01014                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#a13c89cfedbd132742534641ed69391d4" title="Remember its own index in Logger L, [0=dt, 1=ut].">LIDs</a>(0), tmp.left ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
725<a name="l01015"></a>01015                 <span class="comment">// u follows after d in getdata</span>
726<a name="l01016"></a>01016                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#a13c89cfedbd132742534641ed69391d4" title="Remember its own index in Logger L, [0=dt, 1=ut].">LIDs</a>(1), tmp.mid ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
727<a name="l01017"></a>01017         }
728<a name="l01019"></a><a class="code" href="classbdm_1_1DS.html#a069497b610296be053d862a2493be0ce">01019</a>         <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#a069497b610296be053d862a2493be0ce" title="access function">_drv</a>()<span class="keyword"> const </span>{
729<a name="l01020"></a>01020                 <span class="comment">//              return concat (Drv, Urv);// why!!!</span>
730<a name="l01021"></a>01021                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>;<span class="comment">// why!!!</span>
731<a name="l01022"></a>01022         }
732<a name="l01024"></a><a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33">01024</a>         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{
733<a name="l01025"></a>01025                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>;
734<a name="l01026"></a>01026         }
735<a name="l01028"></a><a class="code" href="classbdm_1_1DS.html#ac09878f86907329ac631a3df8755c558">01028</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#ac09878f86907329ac631a3df8755c558" title="access function">_yrv</a>()<span class="keyword"> const </span>{
736<a name="l01029"></a>01029                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>;
737<a name="l01030"></a>01030                 }
738<a name="l01032"></a><a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc">01032</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc" title="set random variables">set_drv</a> (<span class="keyword">const</span>  <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;yrv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;urv) {
739<a name="l01033"></a>01033                     <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a> = yrv;
740<a name="l01034"></a>01034                         <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = concat(yrv,urv);
741<a name="l01035"></a>01035                 <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv;
742<a name="l01036"></a>01036         }
743<a name="l01037"></a>01037 };
744<a name="l01038"></a>01038
745<a name="l01060"></a><a class="code" href="classbdm_1_1BM.html">01060</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
746<a name="l01061"></a>01061 <span class="keyword">protected</span>:
747<a name="l01063"></a><a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed">01063</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;
748<a name="l01065"></a><a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a">01065</a>         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;
749<a name="l01067"></a><a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee">01067</a>         <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>;
750<a name="l01068"></a>01068 <span class="keyword">public</span>:
751<a name="l01071"></a>01071
752<a name="l01072"></a>01072         <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>() : <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( 0 ), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( true ), <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 4 ), <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 4 ) {
753<a name="l01073"></a>01073                 <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> = -1;<span class="comment">/*empty IDs*/</span>
754<a name="l01074"></a>01074                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> = 0;
755<a name="l01075"></a>01075                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) = 1;  <span class="comment">/*log only mean*/</span>
756<a name="l01076"></a>01076         };
757<a name="l01077"></a>01077         <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &amp;B ) :  <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ( B.<a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( B.<a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( B.<a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ) {}
758<a name="l01080"></a><a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">01080</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab" title="Copy function required in vectors, Arrays of BM etc. Have to be DELETED manually!...">_copy_</a>()<span class="keyword"> const </span>{
759<a name="l01081"></a>01081                 <span class="keywordflow">return</span> NULL;
760<a name="l01082"></a>01082         };
761<a name="l01084"></a>01084
762<a name="l01087"></a>01087
763<a name="l01091"></a>01091         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> ( <span class="keyword">const</span> vec &amp;dt ) = 0;
764<a name="l01093"></a>01093         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> ( <span class="keyword">const</span> mat &amp;Dt );
765<a name="l01096"></a><a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">01096</a>         <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( <span class="keyword">const</span> vec &amp;dt )<span class="keyword"> const </span>{
766<a name="l01097"></a>01097                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
767<a name="l01098"></a>01098                 <span class="keywordflow">return</span> 0.0;
768<a name="l01099"></a>01099         }
769<a name="l01100"></a>01100
770<a name="l01102"></a><a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae">01102</a>         vec <a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> ( <span class="keyword">const</span> mat &amp;dt )<span class="keyword"> const </span>{
771<a name="l01103"></a>01103                 vec tmp ( dt.cols() );
772<a name="l01104"></a>01104                 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i &lt; dt.cols(); i++ ) {
773<a name="l01105"></a>01105                         tmp ( i ) = <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( dt.get_col ( i ) );
774<a name="l01106"></a>01106                 }
775<a name="l01107"></a>01107                 <span class="keywordflow">return</span> tmp;
776<a name="l01108"></a>01108         }
777<a name="l01109"></a>01109
778<a name="l01111"></a><a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba">01111</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a>()<span class="keyword"> const </span>{
779<a name="l01112"></a>01112                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
780<a name="l01113"></a>01113                 <span class="keywordflow">return</span> NULL;
781<a name="l01114"></a>01114         };
782<a name="l01116"></a><a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912">01116</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs conditional density of 1-step ahead predictor .">predictor</a>()<span class="keyword"> const </span>{
783<a name="l01117"></a>01117                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
784<a name="l01118"></a>01118                 <span class="keywordflow">return</span> NULL;
785<a name="l01119"></a>01119         };
786<a name="l01121"></a>01121
787<a name="l01126"></a>01126
788<a name="l01128"></a><a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb">01128</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>;
789<a name="l01130"></a><a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33">01130</a>         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{
790<a name="l01131"></a>01131                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>;
791<a name="l01132"></a>01132         }
792<a name="l01133"></a>01133
793<a name="l01135"></a><a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4">01135</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a> ( <span class="keyword">const</span> vec &amp;val ) {
794<a name="l01136"></a>01136                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented!&quot;</span> );
795<a name="l01137"></a>01137         }
796<a name="l01138"></a>01138
797<a name="l01140"></a>01140
798<a name="l01141"></a>01141
799<a name="l01145"></a>01145         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; _drv()<span class="keyword"> const </span>{
800<a name="l01146"></a>01146                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;
801<a name="l01147"></a>01147         }
802<a name="l01149"></a><a class="code" href="classbdm_1_1BM.html#af135ae6dce7e9f30c9f88229c7930b96">01149</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#af135ae6dce7e9f30c9f88229c7930b96" title="access function">set_drv</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv ) {
803<a name="l01150"></a>01150                 <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> = rv;
804<a name="l01151"></a>01151         }
805<a name="l01153"></a><a class="code" href="classbdm_1_1BM.html#ab38d92f17620813ad872d86e01a26e5e">01153</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#ab38d92f17620813ad872d86e01a26e5e" title="access to rv of the posterior">set_rv</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv ) {
806<a name="l01154"></a>01154                 <span class="keyword">const_cast&lt;</span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>&amp;<span class="keyword">&gt;</span> ( <a class="code" href="classbdm_1_1BM.html#abb7b0065d6cb722a66b371a8260121e1" title="return posterior density">posterior</a>() ).<a class="code" href="classbdm_1_1BM.html#ab38d92f17620813ad872d86e01a26e5e" title="access to rv of the posterior">set_rv</a> ( rv );
807<a name="l01155"></a>01155         }
808<a name="l01157"></a><a class="code" href="classbdm_1_1BM.html#a5be65d37dedfe33a3671e7065f523a70">01157</a>         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a5be65d37dedfe33a3671e7065f523a70" title="return internal log-likelihood of the last data vector">_ll</a>()<span class="keyword"> const </span>{
809<a name="l01158"></a>01158                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;
810<a name="l01159"></a>01159         }
811<a name="l01161"></a><a class="code" href="classbdm_1_1BM.html#a236b3abbcc93594fc97cd86d82c1a83f">01161</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a236b3abbcc93594fc97cd86d82c1a83f" title="switch evaluation of log-likelihood on/off">set_evalll</a> ( <span class="keywordtype">bool</span> evl0 ) {
812<a name="l01162"></a>01162                 <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> = evl0;
813<a name="l01163"></a>01163         }
814<a name="l01165"></a>01165         <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>&amp; <a class="code" href="classbdm_1_1BM.html#abb7b0065d6cb722a66b371a8260121e1" title="return posterior density">posterior</a>() <span class="keyword">const</span> = 0;
815<a name="l01167"></a>01167
816<a name="l01170"></a>01170
817<a name="l01172"></a><a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e">01172</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &amp;quot;logbounds,logll&amp;quot;.">set_options</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;opt ) {
818<a name="l01173"></a>01173                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) = 1;
819<a name="l01174"></a>01174                 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">&quot;logbounds&quot;</span> ) != string::npos ) {
820<a name="l01175"></a>01175                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) = 1;
821<a name="l01176"></a>01176                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) = 1;
822<a name="l01177"></a>01177                 }
823<a name="l01178"></a>01178                 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">&quot;logll&quot;</span> ) != string::npos ) {
824<a name="l01179"></a>01179                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) = 1;
825<a name="l01180"></a>01180                 }
826<a name="l01181"></a>01181         }
827<a name="l01183"></a><a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca">01183</a>         ivec <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>;
828<a name="l01184"></a>01184
829<a name="l01186"></a><a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207">01186</a>         ivec <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>;
830<a name="l01188"></a><a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827">01188</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L, <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;name = <span class="stringliteral">&quot;&quot;</span> ) {
831<a name="l01189"></a>01189                 <span class="comment">// internal</span>
832<a name="l01190"></a>01190                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r;
833<a name="l01191"></a>01191                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#abb7b0065d6cb722a66b371a8260121e1" title="return posterior density">posterior</a>().isnamed() ) {
834<a name="l01192"></a>01192                         r = <a class="code" href="classbdm_1_1BM.html#abb7b0065d6cb722a66b371a8260121e1" title="return posterior density">posterior</a>().<a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();
835<a name="l01193"></a>01193                 } <span class="keywordflow">else</span> {
836<a name="l01194"></a>01194                         r = <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">&quot;est&quot;</span>, <a class="code" href="classbdm_1_1BM.html#abb7b0065d6cb722a66b371a8260121e1" title="return posterior density">posterior</a>().dimension() );
837<a name="l01195"></a>01195                 };
838<a name="l01196"></a>01196
839<a name="l01197"></a>01197                 <span class="comment">// Add mean value</span>
840<a name="l01198"></a>01198                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( r, name + <span class="stringliteral">&quot;mean_&quot;</span> );
841<a name="l01199"></a>01199                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( r, name + <span class="stringliteral">&quot;lb_&quot;</span> );
842<a name="l01200"></a>01200                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( r, name + <span class="stringliteral">&quot;ub_&quot;</span> );
843<a name="l01201"></a>01201                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">&quot;ll&quot;</span>, 1 ), name );    <span class="comment">//TODO: &quot;local&quot; RV</span>
844<a name="l01202"></a>01202         }
845<a name="l01204"></a><a class="code" href="classbdm_1_1BM.html#ab517e1679eaa94e803ea4cd0b8efbcd7">01204</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#ab517e1679eaa94e803ea4cd0b8efbcd7" title="Save results to the given logger, details of what is stored is configured by LIDs...">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
846<a name="l01205"></a>01205                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ), <a class="code" href="classbdm_1_1BM.html#abb7b0065d6cb722a66b371a8260121e1" title="return posterior density">posterior</a>().mean() );
847<a name="l01206"></a>01206                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) || <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) ) {  <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span>
848<a name="l01207"></a>01207                         vec ub, lb;
849<a name="l01208"></a>01208                         <a class="code" href="classbdm_1_1BM.html#abb7b0065d6cb722a66b371a8260121e1" title="return posterior density">posterior</a>().<a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( lb, ub );
850<a name="l01209"></a>01209                         L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ), lb );
851<a name="l01210"></a>01210                         L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ), ub );
852<a name="l01211"></a>01211                 }
853<a name="l01212"></a>01212                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) ) L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> );
854<a name="l01213"></a>01213         }
855<a name="l01215"></a><a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de">01215</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de" title="This method arrange instance properties according the data stored in the Setting...">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ) {
856<a name="l01216"></a>01216                 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr&lt;RV&gt;</a> r = UI::build&lt;RV&gt; ( <span class="keyword">set</span>, <span class="stringliteral">&quot;drv&quot;</span>, UI::optional );
857<a name="l01217"></a>01217                 <span class="keywordflow">if</span> ( r ) {
858<a name="l01218"></a>01218                         <a class="code" href="classbdm_1_1BM.html#af135ae6dce7e9f30c9f88229c7930b96" title="access function">set_drv</a> ( *r );
859<a name="l01219"></a>01219                 }
860<a name="l01220"></a>01220                 <span class="keywordtype">string</span> opt;
861<a name="l01221"></a>01221                 <span class="keywordflow">if</span> ( !<a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a> ( opt, <span class="keyword">set</span>, <span class="stringliteral">&quot;options&quot;</span>, UI::optional ) ) {
862<a name="l01222"></a>01222                         <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &amp;quot;logbounds,logll&amp;quot;.">set_options</a> ( opt );
863<a name="l01223"></a>01223                 }
864<a name="l01224"></a>01224         }
865<a name="l01225"></a>01225
866<a name="l01226"></a>01226 };
867<a name="l01228"></a>01228 <span class="keyword">typedef</span> Array&lt;shared_ptr&lt;epdf&gt; &gt; epdf_array;
868<a name="l01230"></a>01230 <span class="keyword">typedef</span> Array&lt;shared_ptr&lt;mpdf&gt; &gt; mpdf_array;
869<a name="l01231"></a>01231
870<a name="l01232"></a>01232 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
871<a name="l01233"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930">01233</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">mpdf_internal&lt;EPDF&gt;::samplecond</a> ( <span class="keyword">const</span> vec &amp;cond ) {
872<a name="l01234"></a>01234         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> ( cond );
873<a name="l01235"></a>01235         vec temp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample();
874<a name="l01236"></a>01236         <span class="keywordflow">return</span> temp;
875<a name="l01237"></a>01237 }
876<a name="l01238"></a>01238
877<a name="l01239"></a>01239 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
878<a name="l01240"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823">01240</a> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">mpdf_internal&lt;EPDF&gt;::samplecond_m</a> ( <span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N ) {
879<a name="l01241"></a>01241         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> ( cond );
880<a name="l01242"></a>01242         mat temp ( dimension(), N );
881<a name="l01243"></a>01243         vec smp ( dimension() );
882<a name="l01244"></a>01244         <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i &lt; N; i++ ) {
883<a name="l01245"></a>01245                 smp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample();
884<a name="l01246"></a>01246                 temp.set_col ( i, smp );
885<a name="l01247"></a>01247         }
886<a name="l01248"></a>01248
887<a name="l01249"></a>01249         <span class="keywordflow">return</span> temp;
888<a name="l01250"></a>01250 }
889<a name="l01251"></a>01251
890<a name="l01252"></a>01252 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
891<a name="l01253"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948">01253</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">mpdf_internal&lt;EPDF&gt;::evallogcond</a> ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;cond ) {
892<a name="l01254"></a>01254         <span class="keywordtype">double</span> tmp;
893<a name="l01255"></a>01255         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> ( cond );
894<a name="l01256"></a>01256         tmp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog ( dt );
895<a name="l01257"></a>01257         <span class="keywordflow">return</span> tmp;
896<a name="l01258"></a>01258 }
897<a name="l01259"></a>01259
898<a name="l01260"></a>01260 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
899<a name="l01261"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c">01261</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal&lt;EPDF&gt;::evallogcond_m</a> ( <span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) {
900<a name="l01262"></a>01262         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> ( cond );
901<a name="l01263"></a>01263         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m ( Dt );
902<a name="l01264"></a>01264 }
903<a name="l01265"></a>01265
904<a name="l01266"></a>01266 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
905<a name="l01267"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae82db07ce8af02f29cfd81e014edb3db">01267</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal&lt;EPDF&gt;::evallogcond_m</a> ( <span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) {
906<a name="l01268"></a>01268         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> ( cond );
907<a name="l01269"></a>01269         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m ( Dt );
908<a name="l01270"></a>01270 }
909<a name="l01271"></a>01271
910<a name="l01272"></a>01272 }; <span class="comment">//namespace</span>
911<a name="l01273"></a>01273 <span class="preprocessor">#endif // BDMBASE_H</span>
912</pre></div></div>
913<hr size="1"/><address style="text-align: right;"><small>Generated on Thu Oct 15 00:07:48 2009 for mixpp by&nbsp;
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915<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>
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