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| [261] | 65 | <h1>libBM.h</h1><a href="libBM_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 |
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| [271] | 66 | <a name="l00013"></a>00013 <span class="preprocessor">#ifndef BM_H</span> |
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| 67 | <a name="l00014"></a>00014 <span class="preprocessor"></span><span class="preprocessor">#define BM_H</span> |
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| 68 | <a name="l00015"></a>00015 <span class="preprocessor"></span> |
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| [354] | 69 | <a name="l00016"></a>00016 <span class="preprocessor">#include <map></span> |
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| 70 | <a name="l00017"></a>00017 |
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| 71 | <a name="l00018"></a>00018 <span class="preprocessor">#include "../itpp_ext.h"</span> |
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| [368] | 72 | <a name="l00019"></a>00019 <span class="preprocessor">#include "../bdmroot.h"</span> |
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| 73 | <a name="l00020"></a>00020 <span class="preprocessor">#include "../user_info.h"</span> |
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| [354] | 74 | <a name="l00021"></a>00021 |
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| [368] | 75 | <a name="l00022"></a>00022 |
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| 76 | <a name="l00023"></a>00023 <span class="keyword">using namespace </span>libconfig; |
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| [354] | 77 | <a name="l00024"></a>00024 <span class="keyword">using namespace </span>itpp; |
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| 78 | <a name="l00025"></a>00025 <span class="keyword">using namespace </span>std; |
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| 79 | <a name="l00026"></a>00026 |
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| 80 | <a name="l00027"></a>00027 <span class="keyword">namespace </span>bdm { |
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| 81 | <a name="l00028"></a>00028 |
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| [368] | 82 | <a name="l00029"></a>00029 <span class="keyword">typedef</span> std::map<string, int> RVmap; |
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| 83 | <a name="l00030"></a>00030 <span class="keyword">extern</span> ivec RV_SIZES; |
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| 84 | <a name="l00031"></a>00031 <span class="keyword">extern</span> Array<string> RV_NAMES; |
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| 85 | <a name="l00032"></a>00032 |
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| 86 | <a name="l00034"></a><a class="code" href="classbdm_1_1str.html">00034</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1str.html" title="Structure of RV (used internally), i.e. expanded RVs - TODO tak proc je ve verejnem...">str</a> { |
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| 87 | <a name="l00035"></a>00035 <span class="keyword">public</span>: |
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| 88 | <a name="l00037"></a><a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0">00037</a> ivec <a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a>; |
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| 89 | <a name="l00039"></a><a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a">00039</a> ivec <a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a>; |
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| 90 | <a name="l00041"></a><a class="code" href="classbdm_1_1str.html#7c6b9dccc6814d7bd1e8e2208a0d3f3f">00041</a> <a class="code" href="classbdm_1_1str.html#7c6b9dccc6814d7bd1e8e2208a0d3f3f" title="Default constructor.">str</a> ( ivec ids0, ivec times0 ) :<a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a> ( ids0 ),<a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a> ( times0 ) { |
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| 91 | <a name="l00042"></a>00042 it_assert_debug ( times0.length() ==ids0.length(),<span class="stringliteral">"Incompatible input"</span> ); |
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| 92 | <a name="l00043"></a>00043 }; |
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| 93 | <a name="l00044"></a>00044 }; |
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| 94 | <a name="l00045"></a>00045 |
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| 95 | <a name="l00084"></a><a class="code" href="classbdm_1_1RV.html">00084</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { |
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| 96 | <a name="l00085"></a>00085 <span class="keyword">protected</span>: |
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| 97 | <a name="l00087"></a><a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb">00087</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>; |
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| 98 | <a name="l00089"></a><a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385">00089</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>; |
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| 99 | <a name="l00091"></a><a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b">00091</a> ivec <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>; |
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| 100 | <a name="l00093"></a><a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896">00093</a> ivec <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>; |
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| 101 | <a name="l00094"></a>00094 |
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| 102 | <a name="l00095"></a>00095 <span class="keyword">private</span>: |
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| 103 | <a name="l00097"></a>00097 <span class="keywordtype">void</span> init ( Array<std::string> in_names, ivec in_sizes, ivec in_times ); |
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| 104 | <a name="l00098"></a>00098 <span class="keywordtype">int</span> init ( <span class="keyword">const</span> <span class="keywordtype">string</span> &name, <span class="keywordtype">int</span> size ); |
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| 105 | <a name="l00099"></a>00099 <span class="keyword">public</span>: |
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| 106 | <a name="l00102"></a>00102 |
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| 107 | <a name="l00104"></a><a class="code" href="classbdm_1_1RV.html#3d93da01a64dab31074b25b7d93e5eae">00104</a> <a class="code" href="classbdm_1_1RV.html#3d93da01a64dab31074b25b7d93e5eae" title="Full constructor.">RV</a> ( Array<std::string> in_names, ivec in_sizes, ivec in_times ) {init ( in_names,in_sizes,in_times );}; |
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| 108 | <a name="l00106"></a><a class="code" href="classbdm_1_1RV.html#5bd1bd9ec51b91578ecc83a6b2398a20">00106</a> <a class="code" href="classbdm_1_1RV.html#5bd1bd9ec51b91578ecc83a6b2398a20" title="Constructor with times=0.">RV</a> ( Array<std::string> in_names, ivec in_sizes ) {init ( in_names,in_sizes,zeros_i ( in_names.length() ) );}; |
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| 109 | <a name="l00108"></a><a class="code" href="classbdm_1_1RV.html#a222dfef569e8f123180d40fde97c1cd">00108</a> <a class="code" href="classbdm_1_1RV.html#a222dfef569e8f123180d40fde97c1cd" title="Constructor with sizes=1, times=0.">RV</a> ( Array<std::string> in_names ) {init ( in_names,ones_i ( in_names.length() ),zeros_i ( in_names.length() ) );} |
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| 110 | <a name="l00110"></a><a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412">00110</a> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> () :<a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a> ( 0 ),<a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a> ( 0 ),<a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( 0 ),<a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( 0 ) {}; |
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| 111 | <a name="l00112"></a>00112 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> ( <span class="keywordtype">string</span> name, <span class="keywordtype">int</span> sz, <span class="keywordtype">int</span> tm=0 ); |
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| 112 | <a name="l00114"></a>00114 |
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| 113 | <a name="l00117"></a>00117 |
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| 114 | <a name="l00119"></a>00119 <span class="keyword">friend</span> std::ostream &<a class="code" href="classbdm_1_1RV.html#cad6f15535d10437f6690cb4492176a8" title="Printing output e.g. for debugging.">operator<< </a>( std::ostream &os, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv ); |
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| 115 | <a name="l00120"></a>00120 <span class="keywordtype">int</span> _dsize()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>;} ; |
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| 116 | <a name="l00122"></a>00122 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#39f9b44752376f07e346579b5ff8cbbd" title="Recount size of the corresponding data vector.">countsize</a>() <span class="keyword">const</span>; |
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| 117 | <a name="l00123"></a>00123 ivec cumsizes() <span class="keyword">const</span>; |
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| 118 | <a name="l00124"></a>00124 <span class="keywordtype">int</span> length()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>;} ; |
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| 119 | <a name="l00125"></a>00125 <span class="keywordtype">int</span> id ( <span class="keywordtype">int</span> at )<span class="keyword"> const</span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at );}; |
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| 120 | <a name="l00126"></a>00126 <span class="keywordtype">int</span> size ( <span class="keywordtype">int</span> at )<span class="keyword"> const </span>{<span class="keywordflow">return</span> RV_SIZES ( <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at ) );}; |
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| 121 | <a name="l00127"></a>00127 <span class="keywordtype">int</span> time ( <span class="keywordtype">int</span> at )<span class="keyword"> const</span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( at );}; |
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| 122 | <a name="l00128"></a>00128 std::string name ( <span class="keywordtype">int</span> at )<span class="keyword"> const </span>{<span class="keywordflow">return</span> RV_NAMES ( <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at ) );}; |
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| 123 | <a name="l00129"></a>00129 <span class="keywordtype">void</span> set_time ( <span class="keywordtype">int</span> at, <span class="keywordtype">int</span> time0 ) {<a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( at ) =time0;}; |
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| 124 | <a name="l00131"></a>00131 |
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| 125 | <a name="l00132"></a>00132 <span class="comment">//TODO why not inline and later??</span> |
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| 126 | <a name="l00133"></a>00133 |
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| 127 | <a name="l00136"></a>00136 |
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| 128 | <a name="l00138"></a>00138 ivec <a class="code" href="classbdm_1_1RV.html#1367055b2608ad9d50d01a2da6cec869" title="Find indices of self in another rv,.">findself</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2 ) <span class="keyword">const</span>; |
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| 129 | <a name="l00140"></a>00140 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2 ) <span class="keyword">const</span>; |
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| 130 | <a name="l00142"></a>00142 <span class="keywordtype">bool</span> <span class="keyword">add</span> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2 ); |
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| 131 | <a name="l00144"></a>00144 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#aec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2 ) <span class="keyword">const</span>; |
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| 132 | <a name="l00146"></a>00146 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indeces ind.">subselect</a> ( <span class="keyword">const</span> ivec &ind ) <span class="keyword">const</span>; |
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| 133 | <a name="l00148"></a><a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966">00148</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indeces ind.">operator() </a>( <span class="keyword">const</span> ivec &ind )<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indeces ind.">subselect</a> ( ind );}; |
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| 134 | <a name="l00150"></a><a class="code" href="classbdm_1_1RV.html#452fb5f7ab1eafe17932bf9f458d0415">00150</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indeces ind.">operator() </a>( <span class="keywordtype">int</span> di1, <span class="keywordtype">int</span> di2 )<span class="keyword"> const </span>{ |
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| 135 | <a name="l00151"></a>00151 ivec sz=cumsizes(); |
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| 136 | <a name="l00152"></a>00152 <span class="keywordtype">int</span> i1=0; |
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| 137 | <a name="l00153"></a>00153 <span class="keywordflow">while</span> ( sz ( i1 ) <di1 ) i1++; |
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| 138 | <a name="l00154"></a>00154 <span class="keywordtype">int</span> i2=i1; |
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| 139 | <a name="l00155"></a>00155 <span class="keywordflow">while</span> ( sz ( i2 ) <di2 ) i2++; |
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| 140 | <a name="l00156"></a>00156 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indeces ind.">subselect</a> ( linspace ( i1,i2 ) ); |
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| 141 | <a name="l00157"></a>00157 }; |
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| 142 | <a name="l00159"></a>00159 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#bd77cb0899f7fba1d0e34396137b7f1f" title="Shift time shifted by delta.">t</a> ( <span class="keywordtype">int</span> delta ); |
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| 143 | <a name="l00161"></a>00161 |
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| 144 | <a name="l00164"></a>00164 |
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| 145 | <a name="l00166"></a>00166 <a class="code" href="classbdm_1_1str.html" title="Structure of RV (used internally), i.e. expanded RVs - TODO tak proc je ve verejnem...">str</a> <a class="code" href="classbdm_1_1RV.html#8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes TODO to_string..">tostr</a>() <span class="keyword">const</span>; |
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| 146 | <a name="l00169"></a>00169 ivec <a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &crv ) <span class="keyword">const</span>; |
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| 147 | <a name="l00172"></a>00172 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv2, ivec &selfi, ivec &rv2i ) <span class="keyword">const</span>; |
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| 148 | <a name="l00174"></a><a class="code" href="classbdm_1_1RV.html#9a5c5aeeaf39299d07763377b05a8241">00174</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a> ()<span class="keyword"> const </span>{<span class="keywordflow">return</span> min ( <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> );}; |
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| 149 | <a name="l00176"></a>00176 |
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| 150 | <a name="l00177"></a>00177 <span class="comment">// TODO aktualizovat dle soucasneho UI</span> |
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| 151 | <a name="l00192"></a>00192 <span class="comment"></span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#d82e3a60503f8d586a05444e5ac4da95" title="UI for class RV (description of data vectors).">from_setting</a>( <span class="keyword">const</span> Setting &root ); |
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| 152 | <a name="l00193"></a>00193 |
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| 153 | <a name="l00194"></a>00194 <span class="comment">// TODO dodelat void to_setting( Setting &root ) const;</span> |
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| 154 | <a name="l00195"></a>00195 }; |
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| 155 | <a name="l00196"></a>00196 UIREGISTER(RV); |
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| 156 | <a name="l00197"></a>00197 |
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| 157 | <a name="l00199"></a>00199 RV concat ( <span class="keyword">const</span> RV &rv1, <span class="keyword">const</span> RV &rv2 ); |
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| 158 | <a name="l00200"></a>00200 |
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| 159 | <a name="l00202"></a>00202 <span class="keyword">extern</span> RV RV0; |
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| 160 | <a name="l00203"></a>00203 |
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| [354] | 161 | <a name="l00205"></a>00205 |
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| [368] | 162 | <a name="l00206"></a><a class="code" href="classbdm_1_1fnc.html">00206</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1fnc.html" title="Class representing function of variable represented by rv.">fnc</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { |
|---|
| 163 | <a name="l00207"></a>00207 <span class="keyword">protected</span>: |
|---|
| 164 | <a name="l00209"></a><a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62">00209</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>; |
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| 165 | <a name="l00210"></a>00210 <span class="keyword">public</span>: |
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| 166 | <a name="l00212"></a><a class="code" href="classbdm_1_1fnc.html#65e9fb11f6cc7884018d8f229bcabbb7">00212</a> <a class="code" href="classbdm_1_1fnc.html#65e9fb11f6cc7884018d8f229bcabbb7" title="default constructor">fnc</a> ( ) {}; |
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| 167 | <a name="l00214"></a><a class="code" href="classbdm_1_1fnc.html#6277b11d7fffc7ef8a2fa3e84ae5bad4">00214</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1fnc.html#6277b11d7fffc7ef8a2fa3e84ae5bad4" title="function evaluates numerical value of at cond ">eval</a> ( <span class="keyword">const</span> vec &cond ) { |
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| 168 | <a name="l00215"></a>00215 <span class="keywordflow">return</span> vec ( 0 ); |
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| 169 | <a name="l00216"></a>00216 }; |
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| 170 | <a name="l00217"></a>00217 |
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| 171 | <a name="l00219"></a><a class="code" href="classbdm_1_1fnc.html#0786e40fade2663a70d654c1dda5d73e">00219</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1fnc.html#0786e40fade2663a70d654c1dda5d73e" title="function substitutes given value into an appropriate position">condition</a> ( <span class="keyword">const</span> vec &val ) {}; |
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| 172 | <a name="l00220"></a>00220 |
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| 173 | <a name="l00222"></a><a class="code" href="classbdm_1_1fnc.html#083832294da9d1e40804158b979c4341">00222</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#083832294da9d1e40804158b979c4341" title="access function">dimension</a>()<span class="keyword"> const</span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;} |
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| 174 | <a name="l00223"></a>00223 }; |
|---|
| 175 | <a name="l00224"></a>00224 |
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| 176 | <a name="l00225"></a>00225 <span class="keyword">class </span>mpdf; |
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| 177 | <a name="l00226"></a>00226 |
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| [354] | 178 | <a name="l00228"></a>00228 |
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| [368] | 179 | <a name="l00229"></a><a class="code" href="classbdm_1_1epdf.html">00229</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { |
|---|
| 180 | <a name="l00230"></a>00230 <span class="keyword">protected</span>: |
|---|
| 181 | <a name="l00232"></a><a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce">00232</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>; |
|---|
| 182 | <a name="l00234"></a><a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8">00234</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>; |
|---|
| 183 | <a name="l00235"></a>00235 |
|---|
| 184 | <a name="l00236"></a>00236 <span class="keyword">public</span>: |
|---|
| 185 | <a name="l00248"></a>00248 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>() :<a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( 0 ),<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ( ) {}; |
|---|
| 186 | <a name="l00249"></a>00249 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &e ) :<a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( e.<a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ),<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ( e.<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) {}; |
|---|
| 187 | <a name="l00250"></a>00250 epdf ( <span class="keyword">const</span> RV &rv0 ) {<a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( rv0 );}; |
|---|
| 188 | <a name="l00251"></a>00251 <span class="keywordtype">void</span> set_parameters ( <span class="keywordtype">int</span> dim0 ) {<a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>=dim0;} |
|---|
| 189 | <a name="l00253"></a>00253 |
|---|
| 190 | <a name="l00256"></a>00256 |
|---|
| 191 | <a name="l00258"></a><a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b">00258</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample, from density .">sample</a> ()<span class="keyword"> const </span>{it_error ( <span class="stringliteral">"not implemneted"</span> );<span class="keywordflow">return</span> vec ( 0 );}; |
|---|
| 192 | <a name="l00260"></a>00260 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#b4cf45fd83cc7573ede9fe1215256058" title="Returns N samples, from density .">sample_m</a> ( <span class="keywordtype">int</span> N ) <span class="keyword">const</span>; |
|---|
| 193 | <a name="l00262"></a><a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249">00262</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val.">evallog</a> ( <span class="keyword">const</span> vec &val )<span class="keyword"> const </span>{it_error ( <span class="stringliteral">"not implemneted"</span> );<span class="keywordflow">return</span> 0.0;}; |
|---|
| 194 | <a name="l00264"></a><a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62">00264</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( <span class="keyword">const</span> mat &Val )<span class="keyword"> const </span>{ |
|---|
| 195 | <a name="l00265"></a>00265 vec x ( Val.cols() ); |
|---|
| 196 | <a name="l00266"></a>00266 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i=0;i<Val.cols();i++ ) {x ( i ) =<a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val.">evallog</a> ( Val.get_col ( i ) ) ;} |
|---|
| 197 | <a name="l00267"></a>00267 <span class="keywordflow">return</span> x; |
|---|
| 198 | <a name="l00268"></a>00268 } |
|---|
| 199 | <a name="l00270"></a><a class="code" href="classbdm_1_1epdf.html#e584eac5579c1b6384947ecf66166c77">00270</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>* <a class="code" href="classbdm_1_1epdf.html#e584eac5579c1b6384947ecf66166c77" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> )<span class="keyword"> const </span>{it_warning ( <span class="stringliteral">"Not implemented"</span> ); <span class="keywordflow">return</span> NULL;} |
|---|
| 200 | <a name="l00272"></a><a class="code" href="classbdm_1_1epdf.html#3fb2ece54f720b62ad325e61214fa0a1">00272</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1epdf.html#3fb2ece54f720b62ad325e61214fa0a1" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> )<span class="keyword"> const </span>{it_warning ( <span class="stringliteral">"Not implemented"</span> ); <span class="keywordflow">return</span> NULL;} |
|---|
| 201 | <a name="l00274"></a><a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75">00274</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>()<span class="keyword"> const </span>{it_error ( <span class="stringliteral">"not implemneted"</span> );<span class="keywordflow">return</span> vec ( 0 );}; |
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| 202 | <a name="l00276"></a><a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c">00276</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()<span class="keyword"> const </span>{it_error ( <span class="stringliteral">"not implemneted"</span> );<span class="keywordflow">return</span> vec ( 0 );}; |
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| 203 | <a name="l00278"></a><a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539">00278</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( vec &lb, vec &ub, <span class="keywordtype">double</span> percentage=0.95 )<span class="keyword"> const </span>{ |
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| 204 | <a name="l00279"></a>00279 vec mea=<a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>(); vec std=sqrt ( <a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>() ); |
|---|
| 205 | <a name="l00280"></a>00280 lb = mea-2*std; ub=mea+2*std; |
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| 206 | <a name="l00281"></a>00281 }; |
|---|
| 207 | <a name="l00283"></a>00283 |
|---|
| 208 | <a name="l00289"></a>00289 |
|---|
| 209 | <a name="l00291"></a><a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff">00291</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv0 ) {<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> = rv0; }<span class="comment">//it_assert_debug(isnamed(),""); };</span> |
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| 210 | <a name="l00293"></a><a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9">00293</a> <span class="comment"></span> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>()<span class="keyword"> const </span>{<span class="keywordtype">bool</span> b= ( <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>==<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() );<span class="keywordflow">return</span> b;} |
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| 211 | <a name="l00295"></a><a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21">00295</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>()<span class="keyword"> const </span>{it_assert_debug ( <a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>(),<span class="stringliteral">""</span> ); <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;} |
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| [354] | 212 | <a name="l00297"></a>00297 |
|---|
| [368] | 213 | <a name="l00300"></a>00300 |
|---|
| 214 | <a name="l00302"></a><a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c">00302</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;} |
|---|
| 215 | <a name="l00304"></a>00304 |
|---|
| 216 | <a name="l00305"></a>00305 }; |
|---|
| 217 | <a name="l00306"></a>00306 |
|---|
| 218 | <a name="l00307"></a>00307 |
|---|
| 219 | <a name="l00309"></a>00309 <span class="comment">//TODO Samplecond can be generalized</span> |
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| 220 | <a name="l00310"></a>00310 |
|---|
| 221 | <a name="l00311"></a><a class="code" href="classbdm_1_1mpdf.html">00311</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { |
|---|
| 222 | <a name="l00312"></a>00312 <span class="keyword">protected</span>: |
|---|
| 223 | <a name="l00314"></a><a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6">00314</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>; |
|---|
| 224 | <a name="l00316"></a><a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288">00316</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>; |
|---|
| 225 | <a name="l00318"></a><a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0">00318</a> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>; |
|---|
| 226 | <a name="l00319"></a>00319 <span class="keyword">public</span>: |
|---|
| 227 | <a name="l00322"></a>00322 |
|---|
| 228 | <a name="l00323"></a>00323 <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> ( ) :<a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ( 0 ),<a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ( ) {}; |
|---|
| 229 | <a name="l00325"></a><a class="code" href="classbdm_1_1mpdf.html#7089fcbd918f201fdf4256119e31f173">00325</a> <a class="code" href="classbdm_1_1mpdf.html#7089fcbd918f201fdf4256119e31f173" title="copy constructor does not set pointer ep - has to be done in offsprings!">mpdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> &m ) :<a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ( m.<a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ),<a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ( m.<a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ) {}; |
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| 230 | <a name="l00327"></a>00327 |
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| [354] | 231 | <a name="l00330"></a>00330 |
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| [368] | 232 | <a name="l00332"></a><a class="code" href="classbdm_1_1mpdf.html#f0c1db6fcbb3aae2dd6123884457a367">00332</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#f0c1db6fcbb3aae2dd6123884457a367" title="Returns a sample from the density conditioned on cond, .">samplecond</a> ( <span class="keyword">const</span> vec &cond ) { |
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| 233 | <a name="l00333"></a>00333 this-><a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( cond ); |
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| 234 | <a name="l00334"></a>00334 vec temp= <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample, from density .">sample</a>(); |
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| 235 | <a name="l00335"></a>00335 <span class="keywordflow">return</span> temp; |
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| 236 | <a name="l00336"></a>00336 }; |
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| 237 | <a name="l00338"></a><a class="code" href="classbdm_1_1mpdf.html#afe4185b26baeb03688202e254d3b005">00338</a> <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf.html#afe4185b26baeb03688202e254d3b005" title="Returns.">samplecond_m</a> ( <span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N ) { |
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| 238 | <a name="l00339"></a>00339 this-><a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( cond ); |
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| 239 | <a name="l00340"></a>00340 mat temp ( <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>(),N ); vec smp ( <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>() ); |
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| 240 | <a name="l00341"></a>00341 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i=0;i<N;i++ ) {smp=<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample, from density .">sample</a>() ;temp.set_col ( i, smp );} |
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| 241 | <a name="l00342"></a>00342 <span class="keywordflow">return</span> temp; |
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| 242 | <a name="l00343"></a>00343 }; |
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| 243 | <a name="l00345"></a><a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530">00345</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( <span class="keyword">const</span> vec &cond ) {it_error ( <span class="stringliteral">"Not implemented"</span> );}; |
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| 244 | <a name="l00346"></a>00346 |
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| 245 | <a name="l00348"></a><a class="code" href="classbdm_1_1mpdf.html#6336a8a72462e2a56a3989a220f18b1b">00348</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf.html#6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &dt, <span class="keyword">const</span> vec &cond ) { |
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| 246 | <a name="l00349"></a>00349 <span class="keywordtype">double</span> tmp; this-><a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( cond );tmp = <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val.">evallog</a> ( dt ); it_assert_debug ( std::isfinite ( tmp ),<span class="stringliteral">"Infinite value"</span> ); <span class="keywordflow">return</span> tmp; |
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| 247 | <a name="l00350"></a>00350 }; |
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| 248 | <a name="l00351"></a>00351 |
|---|
| 249 | <a name="l00353"></a><a class="code" href="classbdm_1_1mpdf.html#0b0ed1ed663071bb7cf4a1349eb94fcb">00353</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#0b0ed1ed663071bb7cf4a1349eb94fcb" title="Matrix version of evallogcond.">evallogcond_m</a> ( <span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond ) {this-><a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( cond );<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( Dt );}; |
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| [354] | 250 | <a name="l00354"></a>00354 |
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| [368] | 251 | <a name="l00357"></a>00357 |
|---|
| 252 | <a name="l00358"></a>00358 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> _rv() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-><a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();} |
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| 253 | <a name="l00359"></a>00359 RV _rvc() {it_assert_debug ( isnamed(),<span class="stringliteral">""</span> ); <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;} |
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| 254 | <a name="l00360"></a>00360 <span class="keywordtype">int</span> dimension() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>->dimension();} |
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| 255 | <a name="l00361"></a>00361 <span class="keywordtype">int</span> dimensionc() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;} |
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| 256 | <a name="l00362"></a>00362 epdf& _epdf() {<span class="keywordflow">return</span> *<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>;} |
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| 257 | <a name="l00363"></a>00363 epdf* _e() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>;} |
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| [354] | 258 | <a name="l00365"></a>00365 |
|---|
| [368] | 259 | <a name="l00368"></a>00368 <span class="keywordtype">void</span> set_rvc ( <span class="keyword">const</span> RV &rvc0 ) {<a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>=rvc0;} |
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| 260 | <a name="l00369"></a>00369 <span class="keywordtype">void</span> set_rv ( <span class="keyword">const</span> RV &rv0 ) {<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>->set_rv ( rv0 );} |
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| 261 | <a name="l00370"></a>00370 <span class="keywordtype">bool</span> isnamed() {<span class="keywordflow">return</span> ( <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>->isnamed() ) && ( <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>==<a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>._dsize() );} |
|---|
| 262 | <a name="l00372"></a>00372 }; |
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| [354] | 263 | <a name="l00373"></a>00373 |
|---|
| [368] | 264 | <a name="l00399"></a><a class="code" href="classbdm_1_1datalink.html">00399</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> { |
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| 265 | <a name="l00400"></a>00400 <span class="keyword">protected</span>: |
|---|
| 266 | <a name="l00402"></a><a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c">00402</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>; |
|---|
| 267 | <a name="l00404"></a><a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045">00404</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>; |
|---|
| 268 | <a name="l00406"></a><a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb">00406</a> ivec <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>; |
|---|
| 269 | <a name="l00407"></a>00407 <span class="keyword">public</span>: |
|---|
| 270 | <a name="l00409"></a><a class="code" href="classbdm_1_1datalink.html#b8b5d5074fc1310a37c3713d58b900e2">00409</a> <a class="code" href="classbdm_1_1datalink.html#b8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a> () {}; |
|---|
| 271 | <a name="l00410"></a>00410 <a class="code" href="classbdm_1_1datalink.html#b8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up ) {<a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv,rv_up );}; |
|---|
| 272 | <a name="l00412"></a><a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67">00412</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up ) { |
|---|
| 273 | <a name="l00413"></a>00413 <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = rv.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(); |
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| 274 | <a name="l00414"></a>00414 <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> = rv_up.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(); |
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| 275 | <a name="l00415"></a>00415 <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>= ( rv.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rv_up ) ); |
|---|
| 276 | <a name="l00416"></a>00416 |
|---|
| 277 | <a name="l00417"></a>00417 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>.length() ==<a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>,<span class="stringliteral">"rv is not fully in rv_up"</span> ); |
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| 278 | <a name="l00418"></a>00418 } |
|---|
| 279 | <a name="l00420"></a><a class="code" href="classbdm_1_1datalink.html#724486a37002e7a3a73366c3af9b82ad">00420</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#724486a37002e7a3a73366c3af9b82ad" title="set connection using indeces">set_connection</a> ( <span class="keywordtype">int</span> ds, <span class="keywordtype">int</span> us, <span class="keyword">const</span> ivec &upind ) { |
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| 280 | <a name="l00421"></a>00421 <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = ds; |
|---|
| 281 | <a name="l00422"></a>00422 <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> = us; |
|---|
| 282 | <a name="l00423"></a>00423 <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>= upind; |
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| [354] | 283 | <a name="l00424"></a>00424 |
|---|
| 284 | <a name="l00425"></a>00425 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>.length() ==<a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>,<span class="stringliteral">"rv is not fully in rv_up"</span> ); |
|---|
| 285 | <a name="l00426"></a>00426 } |
|---|
| [368] | 286 | <a name="l00428"></a><a class="code" href="classbdm_1_1datalink.html#5b5368c3899eed2f670d09142c2548e5">00428</a> vec <a class="code" href="classbdm_1_1datalink.html#5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &quot;Up&quot;.">pushdown</a> ( <span class="keyword">const</span> vec &val_up ) { |
|---|
| 287 | <a name="l00429"></a>00429 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); |
|---|
| 288 | <a name="l00430"></a>00430 <span class="keywordflow">return</span> get_vec ( val_up,<a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a> ); |
|---|
| 289 | <a name="l00431"></a>00431 } |
|---|
| 290 | <a name="l00433"></a><a class="code" href="classbdm_1_1datalink.html#610e966f2edb1fcd6a5b28267c571793">00433</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#610e966f2edb1fcd6a5b28267c571793" title="Fill val of &quot;Up&quot; by my pieces.">pushup</a> ( vec &val_up, <span class="keyword">const</span> vec &val ) { |
|---|
| 291 | <a name="l00434"></a>00434 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>==val.length(),<span class="stringliteral">"Wrong val"</span> ); |
|---|
| 292 | <a name="l00435"></a>00435 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); |
|---|
| 293 | <a name="l00436"></a>00436 set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>, val ); |
|---|
| 294 | <a name="l00437"></a>00437 } |
|---|
| 295 | <a name="l00438"></a>00438 }; |
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| 296 | <a name="l00439"></a>00439 |
|---|
| 297 | <a name="l00441"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00441</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> { |
|---|
| 298 | <a name="l00442"></a>00442 <span class="keyword">protected</span>: |
|---|
| 299 | <a name="l00444"></a><a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9">00444</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>; |
|---|
| 300 | <a name="l00446"></a><a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783">00446</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>; |
|---|
| 301 | <a name="l00448"></a><a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc">00448</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>; |
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| 302 | <a name="l00449"></a>00449 |
|---|
| 303 | <a name="l00450"></a>00450 <span class="keyword">public</span>: |
|---|
| 304 | <a name="l00451"></a>00451 <a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a>() {}; |
|---|
| 305 | <a name="l00453"></a><a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0">00453</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0" title="Constructor.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up ) { |
|---|
| 306 | <a name="l00454"></a>00454 <a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0" title="Constructor.">datalink::set_connection</a> ( rv,rv_up ); |
|---|
| 307 | <a name="l00455"></a>00455 <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>= rvc.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(); |
|---|
| 308 | <a name="l00456"></a>00456 <span class="comment">//establish v2c connection</span> |
|---|
| 309 | <a name="l00457"></a>00457 rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rv_up, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ); |
|---|
| 310 | <a name="l00458"></a>00458 } |
|---|
| 311 | <a name="l00460"></a><a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703">00460</a> vec <a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> ( <span class="keyword">const</span> vec &val_up ) { |
|---|
| 312 | <a name="l00461"></a>00461 vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ); |
|---|
| 313 | <a name="l00462"></a>00462 set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>,val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ) ); |
|---|
| 314 | <a name="l00463"></a>00463 <span class="keywordflow">return</span> tmp; |
|---|
| 315 | <a name="l00464"></a>00464 } |
|---|
| 316 | <a name="l00465"></a>00465 <span class="keywordtype">void</span> pushup_cond ( vec &val_up, <span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond ) { |
|---|
| 317 | <a name="l00466"></a>00466 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>==val.length(),<span class="stringliteral">"Wrong val"</span> ); |
|---|
| 318 | <a name="l00467"></a>00467 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); |
|---|
| 319 | <a name="l00468"></a>00468 set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>, val ); |
|---|
| 320 | <a name="l00469"></a>00469 set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>, cond ); |
|---|
| 321 | <a name="l00470"></a>00470 } |
|---|
| 322 | <a name="l00471"></a>00471 }; |
|---|
| 323 | <a name="l00474"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00474</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a> { |
|---|
| 324 | <a name="l00475"></a>00475 <span class="keyword">protected</span>: |
|---|
| 325 | <a name="l00477"></a><a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d">00477</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a>; |
|---|
| 326 | <a name="l00479"></a><a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5">00479</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>; |
|---|
| 327 | <a name="l00480"></a>00480 <span class="keyword">public</span>: |
|---|
| 328 | <a name="l00482"></a><a class="code" href="classbdm_1_1datalink__m2m.html#3baed32cb66f0e2f731032cec0a4d287">00482</a> <a class="code" href="classbdm_1_1datalink__m2m.html#3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {}; |
|---|
| 329 | <a name="l00483"></a>00483 <span class="keywordtype">void</span> set_connection ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc_up ) { |
|---|
| 330 | <a name="l00484"></a>00484 <a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0" title="Constructor.">datalink_m2e::set_connection</a> ( rv, rvc, rv_up ); |
|---|
| 331 | <a name="l00485"></a>00485 <span class="comment">//establish c2c connection</span> |
|---|
| 332 | <a name="l00486"></a>00486 rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a> ); |
|---|
| 333 | <a name="l00487"></a>00487 it_assert_debug ( <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>.length() +<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>.length() ==<a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">"cond is not fully given"</span> ); |
|---|
| 334 | <a name="l00488"></a>00488 } |
|---|
| 335 | <a name="l00490"></a><a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90">00490</a> vec <a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &quot;Up&quot;.">get_cond</a> ( <span class="keyword">const</span> vec &val_up, <span class="keyword">const</span> vec &cond_up ) { |
|---|
| 336 | <a name="l00491"></a>00491 vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ); |
|---|
| 337 | <a name="l00492"></a>00492 set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>,val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ) ); |
|---|
| 338 | <a name="l00493"></a>00493 set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>,cond_up ( <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a> ) ); |
|---|
| 339 | <a name="l00494"></a>00494 <span class="keywordflow">return</span> tmp; |
|---|
| 340 | <a name="l00495"></a>00495 } |
|---|
| 341 | <a name="l00497"></a>00497 |
|---|
| 342 | <a name="l00498"></a>00498 }; |
|---|
| 343 | <a name="l00499"></a>00499 |
|---|
| 344 | <a name="l00505"></a><a class="code" href="classbdm_1_1logger.html">00505</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { |
|---|
| 345 | <a name="l00506"></a>00506 <span class="keyword">protected</span>: |
|---|
| 346 | <a name="l00508"></a><a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f">00508</a> Array<RV> <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>; |
|---|
| 347 | <a name="l00510"></a><a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02">00510</a> Array<string> <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>; |
|---|
| 348 | <a name="l00511"></a>00511 <span class="keyword">public</span>: |
|---|
| 349 | <a name="l00513"></a><a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf">00513</a> <a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a> ( ) : <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( 0 ),<a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> ( 0 ) {} |
|---|
| 350 | <a name="l00514"></a>00514 |
|---|
| 351 | <a name="l00517"></a><a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">00517</a> <span class="keyword">virtual</span> <span class="keywordtype">int</span> <span class="keyword">add</span> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keywordtype">string</span> prefix=<span class="stringliteral">""</span> ) { |
|---|
| 352 | <a name="l00518"></a>00518 <span class="keywordtype">int</span> id; |
|---|
| 353 | <a name="l00519"></a>00519 <span class="keywordflow">if</span> ( rv.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() >0 ) { |
|---|
| 354 | <a name="l00520"></a>00520 <span class="keywordtype">id</span>=<a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length(); |
|---|
| 355 | <a name="l00521"></a>00521 <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>=concat ( <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix); <span class="comment">// diff</span> |
|---|
| 356 | <a name="l00522"></a>00522 <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length ( <span class="keywordtype">id</span>+1,<span class="keyword">true</span> ); |
|---|
| 357 | <a name="l00523"></a>00523 <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( <span class="keywordtype">id</span> ) = rv; |
|---|
| 358 | <a name="l00524"></a>00524 } |
|---|
| 359 | <a name="l00525"></a>00525 <span class="keywordflow">else</span> { <span class="keywordtype">id</span> =-1;} |
|---|
| 360 | <a name="l00526"></a>00526 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span> |
|---|
| 361 | <a name="l00527"></a>00527 } |
|---|
| 362 | <a name="l00528"></a>00528 |
|---|
| 363 | <a name="l00530"></a>00530 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &v ) =0; |
|---|
| 364 | <a name="l00532"></a>00532 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &d ) =0; |
|---|
| 365 | <a name="l00533"></a>00533 |
|---|
| 366 | <a name="l00535"></a>00535 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#4f31c03578a7b9b30d8b1f8c338a37e8" title="Shifts storage position for another time step.">step</a>() =0; |
|---|
| [354] | 367 | <a name="l00536"></a>00536 |
|---|
| [368] | 368 | <a name="l00538"></a><a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d">00538</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {}; |
|---|
| 369 | <a name="l00539"></a>00539 |
|---|
| 370 | <a name="l00541"></a><a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc">00541</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {}; |
|---|
| 371 | <a name="l00542"></a>00542 |
|---|
| 372 | <a name="l00543"></a>00543 }; |
|---|
| [354] | 373 | <a name="l00544"></a>00544 |
|---|
| [368] | 374 | <a name="l00548"></a><a class="code" href="classbdm_1_1mepdf.html">00548</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> { |
|---|
| 375 | <a name="l00549"></a>00549 <span class="keyword">public</span>: |
|---|
| 376 | <a name="l00551"></a><a class="code" href="classbdm_1_1mepdf.html#8c320c7f878fb665e93aec1499ef53ff">00551</a> <a class="code" href="classbdm_1_1mepdf.html#8c320c7f878fb665e93aec1499ef53ff" title="Default constructor.">mepdf</a> ( <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* em ) :<a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> ( ) {<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>= em ;}; |
|---|
| 377 | <a name="l00552"></a>00552 <a class="code" href="classbdm_1_1mepdf.html#8c320c7f878fb665e93aec1499ef53ff" title="Default constructor.">mepdf</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* em ) :<a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> ( ) {<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>=<span class="keyword">const_cast<</span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>*<span class="keyword">></span>( em );}; |
|---|
| 378 | <a name="l00553"></a><a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c">00553</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( <span class="keyword">const</span> vec &cond ) {} |
|---|
| 379 | <a name="l00554"></a>00554 }; |
|---|
| 380 | <a name="l00555"></a>00555 |
|---|
| [385] | 381 | <a name="l00558"></a><a class="code" href="classbdm_1_1compositepdf.html">00558</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1compositepdf.html" title="Chain rule of pdfs - abstract part common for mprod and merger. this abstract class...">compositepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a>{ |
|---|
| [368] | 382 | <a name="l00559"></a>00559 <span class="keyword">protected</span>: |
|---|
| [385] | 383 | <a name="l00561"></a><a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a">00561</a> Array<mpdf*> <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>; |
|---|
| 384 | <a name="l00562"></a>00562 <span class="keyword">public</span>: |
|---|
| 385 | <a name="l00563"></a>00563 <a class="code" href="classbdm_1_1compositepdf.html" title="Chain rule of pdfs - abstract part common for mprod and merger. this abstract class...">compositepdf</a>():<a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>(0){}; |
|---|
| 386 | <a name="l00564"></a>00564 <span class="keywordtype">void</span> set_elements (<span class="keyword">const</span> Array<mpdf*> A0 ) { <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a> = A0;}; |
|---|
| 387 | <a name="l00566"></a>00566 RV <a class="code" href="classbdm_1_1compositepdf.html#c73d39acc4378eee6a63155c3517d3c9" title="find common rv, flag">getrv</a> ( <span class="keywordtype">bool</span> checkoverlap=<span class="keyword">false</span> ); |
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| 388 | <a name="l00568"></a>00568 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1compositepdf.html#c71fc2c51f49d797e61f479f543c75ce" title="common rvc of all mpdfs is written to rvc">setrvc</a> ( <span class="keyword">const</span> RV &rv, RV &rvc ); |
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| [368] | 389 | <a name="l00570"></a>00570 }; |
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| 390 | <a name="l00571"></a>00571 |
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| 391 | <a name="l00579"></a><a class="code" href="classbdm_1_1DS.html">00579</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { |
|---|
| 392 | <a name="l00580"></a>00580 <span class="keyword">protected</span>: |
|---|
| 393 | <a name="l00581"></a>00581 <span class="keywordtype">int</span> dtsize; |
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| 394 | <a name="l00582"></a>00582 <span class="keywordtype">int</span> utsize; |
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| 395 | <a name="l00584"></a><a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec">00584</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>; |
|---|
| 396 | <a name="l00586"></a><a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702">00586</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span> |
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| 397 | <a name="l00588"></a><a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867">00588</a> <span class="comment"></span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut; |
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| 398 | <a name="l00589"></a>00589 <span class="keyword">public</span>: |
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| 399 | <a name="l00591"></a><a class="code" href="classbdm_1_1DS.html#bedd82e08ae6686b4b1732a122c2201a">00591</a> <a class="code" href="classbdm_1_1DS.html#bedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() :<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> ( ),<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> ( ) {}; |
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| 400 | <a name="l00593"></a><a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba">00593</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &dt ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; |
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| 401 | <a name="l00595"></a><a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832">00595</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a> ( vec &dt, <span class="keyword">const</span> ivec &indeces ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; |
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| 402 | <a name="l00597"></a><a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a">00597</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> ( vec &ut ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; |
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| 403 | <a name="l00599"></a><a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d">00599</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d" title="Accepts action variables at specific indeces.">write</a> ( vec &ut, <span class="keyword">const</span> ivec &indeces ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; |
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| 404 | <a name="l00600"></a>00600 |
|---|
| 405 | <a name="l00602"></a>00602 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#9a14c64d881e838ddc3a5617ee8a973b" title="Moves from to , i.e. perfroms the actions and reads response of the system.">step</a>() =0; |
|---|
| 406 | <a name="l00603"></a>00603 |
|---|
| 407 | <a name="l00605"></a><a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e">00605</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L ) { |
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| 408 | <a name="l00606"></a>00606 it_assert_debug ( dtsize==<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(),<span class="stringliteral">""</span> ); |
|---|
| 409 | <a name="l00607"></a>00607 it_assert_debug ( utsize==<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(),<span class="stringliteral">""</span> ); |
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| [354] | 410 | <a name="l00608"></a>00608 |
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| [368] | 411 | <a name="l00609"></a>00609 <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>=L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>,<span class="stringliteral">""</span> ); |
|---|
| 412 | <a name="l00610"></a>00610 L_ut=L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>,<span class="stringliteral">""</span> ); |
|---|
| 413 | <a name="l00611"></a>00611 } |
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| 414 | <a name="l00613"></a><a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf">00613</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L ) { |
|---|
| 415 | <a name="l00614"></a>00614 vec tmp ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() +<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() ); |
|---|
| 416 | <a name="l00615"></a>00615 <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( tmp ); |
|---|
| 417 | <a name="l00616"></a>00616 <span class="comment">// d is first in getdata</span> |
|---|
| 418 | <a name="l00617"></a>00617 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>,tmp.left ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() ) ); |
|---|
| 419 | <a name="l00618"></a>00618 <span class="comment">// u follows after d in getdata</span> |
|---|
| 420 | <a name="l00619"></a>00619 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( L_ut,tmp.mid ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(), <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() ) ); |
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| 421 | <a name="l00620"></a>00620 } |
|---|
| 422 | <a name="l00622"></a><a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660">00622</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660" title="access function">_drv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> concat ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>,<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> );} |
|---|
| 423 | <a name="l00624"></a><a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33">00624</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>;} |
|---|
| 424 | <a name="l00626"></a><a class="code" href="classbdm_1_1DS.html#821297dfd839d68691324f024e57252f">00626</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#821297dfd839d68691324f024e57252f" title="set random rvariables">set_drv</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &drv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &urv) { <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>=drv;<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>=urv;} |
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| 425 | <a name="l00627"></a>00627 }; |
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| 426 | <a name="l00628"></a>00628 |
|---|
| 427 | <a name="l00650"></a><a class="code" href="classbdm_1_1BM.html">00650</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { |
|---|
| 428 | <a name="l00651"></a>00651 <span class="keyword">protected</span>: |
|---|
| 429 | <a name="l00653"></a><a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed">00653</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; |
|---|
| 430 | <a name="l00655"></a><a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a">00655</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; |
|---|
| 431 | <a name="l00657"></a><a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee">00657</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>; |
|---|
| 432 | <a name="l00658"></a>00658 <span class="keyword">public</span>: |
|---|
| 433 | <a name="l00661"></a>00661 |
|---|
| 434 | <a name="l00662"></a>00662 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> () :<a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( 0 ),<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( true ), <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 4 ), <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(4) { |
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| 435 | <a name="l00663"></a>00663 <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>=-1;<span class="comment">/*empty IDs*/</span> <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>=0; <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(0)=1;<span class="comment">/*log only mean*/</span>}; |
|---|
| 436 | <a name="l00664"></a>00664 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &B ) : <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ( B.<a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( B.<a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ), <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( B.<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ) {} |
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| 437 | <a name="l00667"></a><a class="code" href="classbdm_1_1BM.html#40f01563651c1e4fe926189e41a6b8ab">00667</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#40f01563651c1e4fe926189e41a6b8ab">_copy_</a> ()<span class="keyword"> const </span>{<span class="keywordflow">return</span> NULL;}; |
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| [354] | 438 | <a name="l00669"></a>00669 |
|---|
| [368] | 439 | <a name="l00672"></a>00672 |
|---|
| 440 | <a name="l00676"></a>00676 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> ( <span class="keyword">const</span> vec &dt ) = 0; |
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| 441 | <a name="l00678"></a>00678 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> ( <span class="keyword">const</span> mat &Dt ); |
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| 442 | <a name="l00681"></a><a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">00681</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( <span class="keyword">const</span> vec &dt )<span class="keyword"> const</span>{it_error ( <span class="stringliteral">"Not implemented"</span> );<span class="keywordflow">return</span> 0.0;} |
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| 443 | <a name="l00683"></a><a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae">00683</a> vec <a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> ( <span class="keyword">const</span> mat &dt )<span class="keyword"> const</span>{vec tmp ( dt.cols() );<span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i=0;i<dt.cols();i++ ) {tmp ( i ) =<a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( dt.get_col ( i ) );}<span class="keywordflow">return</span> tmp;} |
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| 444 | <a name="l00684"></a>00684 |
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| 445 | <a name="l00686"></a><a class="code" href="classbdm_1_1BM.html#688d7a2aced1e06aa1c468d73a9e5eba">00686</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a> ( )<span class="keyword"> const </span>{it_error ( <span class="stringliteral">"Not implemented"</span> );<span class="keywordflow">return</span> NULL;}; |
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| [385] | 446 | <a name="l00688"></a><a class="code" href="classbdm_1_1BM.html#598b25e3f3d96a5bc00a5faeb5b3c912">00688</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs a conditional density 1-step ahead predictor .">predictor</a> ( )<span class="keyword"> const </span>{it_error ( <span class="stringliteral">"Not implemented"</span> );<span class="keywordflow">return</span> NULL;}; |
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| [368] | 447 | <a name="l00690"></a>00690 |
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| 448 | <a name="l00695"></a>00695 |
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| 449 | <a name="l00697"></a><a class="code" href="classbdm_1_1BM.html#de95c590d650b2db423d53992f0906cb">00697</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rvc; |
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| 450 | <a name="l00699"></a><a class="code" href="classbdm_1_1BM.html#b5e8e016be16e4029c789063cb3f3b33">00699</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1BM.html#b5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> rvc;} |
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| 451 | <a name="l00700"></a>00700 |
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| 452 | <a name="l00702"></a><a class="code" href="classbdm_1_1BM.html#6799f4b16a6a59ed58b1d0d6e17116f4">00702</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a> ( <span class="keyword">const</span> vec &val ) {it_error ( <span class="stringliteral">"Not implemented!"</span> );}; |
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| [354] | 453 | <a name="l00703"></a>00703 |
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| [368] | 454 | <a name="l00705"></a>00705 |
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| 455 | <a name="l00706"></a>00706 |
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| 456 | <a name="l00709"></a>00709 |
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| 457 | <a name="l00710"></a>00710 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& _drv()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;} |
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| 458 | <a name="l00711"></a>00711 <span class="keywordtype">void</span> set_drv ( <span class="keyword">const</span> RV &rv ) {<a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>=rv;} |
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| 459 | <a name="l00712"></a>00712 <span class="keywordtype">void</span> set_rv ( <span class="keyword">const</span> RV &rv ) {<span class="keyword">const_cast<</span>epdf&<span class="keyword">></span> ( posterior() ).set_rv ( rv );} |
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| 460 | <a name="l00713"></a>00713 <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;} |
|---|
| 461 | <a name="l00714"></a>00714 <span class="keywordtype">void</span> set_evalll ( <span class="keywordtype">bool</span> evl0 ) {<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>=evl0;} |
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| 462 | <a name="l00715"></a>00715 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf& posterior() <span class="keyword">const</span> =0; |
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| 463 | <a name="l00716"></a>00716 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf* _e() <span class="keyword">const</span> =0; |
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| 464 | <a name="l00718"></a>00718 |
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| 465 | <a name="l00721"></a>00721 |
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| 466 | <a name="l00723"></a><a class="code" href="classbdm_1_1BM.html#adb539fa2585c8a2a91c54e5aebf330e">00723</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#adb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string recognized are: &quot;logbounds,logll&quot;.">set_options</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span> &opt ) { |
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| 467 | <a name="l00724"></a>00724 <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(0)=1; |
|---|
| 468 | <a name="l00725"></a>00725 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">"logbounds"</span> ) !=string::npos ) {<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(1)=1; <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(2)=1;} |
|---|
| 469 | <a name="l00726"></a>00726 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">"logll"</span> ) !=string::npos ) {<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(3)=1;} |
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| 470 | <a name="l00727"></a>00727 } |
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| 471 | <a name="l00729"></a><a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca">00729</a> ivec <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>; |
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| 472 | <a name="l00730"></a>00730 |
|---|
| 473 | <a name="l00732"></a><a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207">00732</a> ivec <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>; |
|---|
| 474 | <a name="l00734"></a><a class="code" href="classbdm_1_1BM.html#2298ca6af9b13a78a4c9e18ab43f1827">00734</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L, <span class="keyword">const</span> <span class="keywordtype">string</span> &name=<span class="stringliteral">""</span> ) { |
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| 475 | <a name="l00735"></a>00735 <span class="comment">// internal</span> |
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| 476 | <a name="l00736"></a>00736 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r; |
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| 477 | <a name="l00737"></a>00737 <span class="keywordflow">if</span> ( posterior().isnamed() ) {r=posterior().<a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();} |
|---|
| 478 | <a name="l00738"></a>00738 <span class="keywordflow">else</span>{r=<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">"est"</span>, posterior().dimension() );}; |
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| 479 | <a name="l00739"></a>00739 |
|---|
| 480 | <a name="l00740"></a>00740 <span class="comment">// Add mean value</span> |
|---|
| 481 | <a name="l00741"></a>00741 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(0)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ) =L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( r,name+<span class="stringliteral">"mean_"</span> ); |
|---|
| 482 | <a name="l00742"></a>00742 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(1)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ) =L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( r,name+<span class="stringliteral">"lb_"</span> ); |
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| 483 | <a name="l00743"></a>00743 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(2)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ) =L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( r,name+<span class="stringliteral">"ub_"</span> ); |
|---|
| 484 | <a name="l00744"></a>00744 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(3)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ) =L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>(<span class="stringliteral">"ll"</span>,1),name ); <span class="comment">//TODO: "local" RV </span> |
|---|
| 485 | <a name="l00745"></a>00745 } |
|---|
| 486 | <a name="l00746"></a>00746 <span class="keyword">virtual</span> <span class="keywordtype">void</span> logit ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L ) { |
|---|
| 487 | <a name="l00747"></a>00747 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ), posterior().mean() ); |
|---|
| 488 | <a name="l00748"></a>00748 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(1) || <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(2)) { <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span> |
|---|
| 489 | <a name="l00749"></a>00749 vec ub,lb; |
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| 490 | <a name="l00750"></a>00750 posterior().<a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( lb,ub ); |
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| 491 | <a name="l00751"></a>00751 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ), lb ); |
|---|
| 492 | <a name="l00752"></a>00752 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ), ub ); |
|---|
| 493 | <a name="l00753"></a>00753 } |
|---|
| 494 | <a name="l00754"></a>00754 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(3)) L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ); |
|---|
| 495 | <a name="l00755"></a>00755 } |
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| 496 | <a name="l00757"></a>00757 }; |
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| 497 | <a name="l00758"></a>00758 |
|---|
| 498 | <a name="l00759"></a>00759 |
|---|
| 499 | <a name="l00760"></a>00760 }; <span class="comment">//namespace</span> |
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| 500 | <a name="l00761"></a>00761 <span class="preprocessor">#endif // BM_H</span> |
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| [91] | 501 | </pre></div></div> |
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| [385] | 502 | <hr size="1"><address style="text-align: right;"><small>Generated on Wed Jun 17 14:13:28 2009 for mixpp by |
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| [3] | 503 | <a href="http://www.doxygen.org/index.html"> |
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| [290] | 504 | <img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.5.8 </small></address> |
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| [3] | 505 | </body> |
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| 506 | </html> |
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