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02/11/09 14:15:39 (16 years ago)
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  • doc/html/libBM_8h-source.html

    r264 r269  
    5858<a name="l00076"></a>00076                 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> ( Array&lt;std::string&gt; in_names ); 
    5959<a name="l00078"></a>00078                 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> (); 
    60 <a name="l00079"></a>00079  
    61 <a name="l00081"></a>00081                 <span class="keyword">friend</span> std::ostream &amp;<a class="code" href="classbdm_1_1RV.html#cad6f15535d10437f6690cb4492176a8" title="Printing output e.g. for debugging.">operator&lt;&lt; </a>( std::ostream &amp;os, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv ); 
    62 <a name="l00082"></a>00082  
    63 <a name="l00084"></a><a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67">00084</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#38203096d950671def44de8cf1c6bb2e" title="size = sum of sizes">tsize</a>;} ; 
    64 <a name="l00086"></a><a class="code" href="classbdm_1_1RV.html#e9ec8c3e756651ff352ab5e3d3acda4b">00086</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#e9ec8c3e756651ff352ab5e3d3acda4b" title="Return length (number of entries) of the RV.">length</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="len = number of individual rvs">len</a>;} ; 
    65 <a name="l00087"></a>00087  
    66 <a name="l00088"></a>00088                 <span class="comment">//TODO why not inline and later??</span> 
     60<a name="l00080"></a>00080                 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> (<span class="keywordtype">string</span> <a class="code" href="classbdm_1_1RV.html#d05af87595cfb7fa2e0fadeae5597fa8" title="access function">name</a>, <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keywordtype">int</span> sz=1, <span class="keywordtype">int</span> tm=0); 
     61<a name="l00081"></a>00081  
     62<a name="l00083"></a>00083                 <span class="keyword">friend</span> std::ostream &amp;<a class="code" href="classbdm_1_1RV.html#cad6f15535d10437f6690cb4492176a8" title="Printing output e.g. for debugging.">operator&lt;&lt; </a>( std::ostream &amp;os, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv ); 
     63<a name="l00084"></a>00084  
     64<a name="l00086"></a><a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67">00086</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#38203096d950671def44de8cf1c6bb2e" title="size = sum of sizes">tsize</a>;} ; 
     65<a name="l00088"></a><a class="code" href="classbdm_1_1RV.html#e9ec8c3e756651ff352ab5e3d3acda4b">00088</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#e9ec8c3e756651ff352ab5e3d3acda4b" title="Return length (number of entries) of the RV.">length</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="len = number of individual rvs">len</a>;} ; 
    6766<a name="l00089"></a>00089  
    68 <a name="l00091"></a>00091                 ivec <a class="code" href="classbdm_1_1RV.html#1367055b2608ad9d50d01a2da6cec869" title="Find indexes of self in another rv,.">findself</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2 ) <span class="keyword">const</span>; 
    69 <a name="l00093"></a>00093                 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2 ) <span class="keyword">const</span>; 
    70 <a name="l00095"></a>00095                 <span class="keywordtype">bool</span> <span class="keyword">add</span> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2 ); 
    71 <a name="l00097"></a>00097                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#aec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2 ) <span class="keyword">const</span>; 
    72 <a name="l00099"></a>00099                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indeces ind.">subselect</a> ( <span class="keyword">const</span> ivec &amp;ind ) <span class="keyword">const</span>; 
    73 <a name="l00101"></a>00101                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indeces ind.">operator() </a>( <span class="keyword">const</span> ivec &amp;ind ) <span class="keyword">const</span>; 
    74 <a name="l00103"></a>00103                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#bd77cb0899f7fba1d0e34396137b7f1f" title="Shift time shifted by delta.">t</a> ( <span class="keywordtype">int</span> delta ); 
    75 <a name="l00105"></a>00105                 <a class="code" href="classbdm_1_1str.html" title="Structure of RV (used internally), i.e. expanded RVs.">str</a> <a class="code" href="classbdm_1_1RV.html#8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes">tostr</a>() <span class="keyword">const</span>; 
    76 <a name="l00108"></a>00108                 ivec <a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;crv ) <span class="keyword">const</span>; 
    77 <a name="l00111"></a>00111                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2, ivec &amp;selfi, ivec &amp;rv2i ) <span class="keyword">const</span>; 
    78 <a name="l00113"></a><a class="code" href="classbdm_1_1RV.html#8bfda300b769a05598c55cb94fe61f52">00113</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#8bfda300b769a05598c55cb94fe61f52" title="Minimum time-offset.">mint</a> () {<span class="keywordflow">return</span> min ( <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> );}; 
    79 <a name="l00114"></a>00114  
    80 <a name="l00116"></a><a class="code" href="classbdm_1_1RV.html#ae0c6e729851a43c82a5b1c199474ef2">00116</a>                 Array&lt;std::string&gt;&amp; <a class="code" href="classbdm_1_1RV.html#ae0c6e729851a43c82a5b1c199474ef2" title="access function">_names</a>() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#9a87c46918c3c0db0bdca854a48a44aa" title="Array of names.">names</a>;}; 
    81 <a name="l00117"></a>00117  
    82 <a name="l00119"></a><a class="code" href="classbdm_1_1RV.html#172390b8525ef5aac684228241fff7b5">00119</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#172390b8525ef5aac684228241fff7b5" title="access function">id</a> ( <span class="keywordtype">int</span> at ) {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at );}; 
    83 <a name="l00121"></a><a class="code" href="classbdm_1_1RV.html#8e64d02005a02aef72f214286977d8de">00121</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#8e64d02005a02aef72f214286977d8de" title="access function">size</a> ( <span class="keywordtype">int</span> at ) {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#0112d25045f6f8fabdc9e821029928ee" title="Vector of sizes.">sizes</a> ( at );}; 
    84 <a name="l00123"></a><a class="code" href="classbdm_1_1RV.html#aff4de8185750b506492623847520518">00123</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#aff4de8185750b506492623847520518" title="access function">time</a> ( <span class="keywordtype">int</span> at ) {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( at );}; 
    85 <a name="l00125"></a><a class="code" href="classbdm_1_1RV.html#d05af87595cfb7fa2e0fadeae5597fa8">00125</a>                 std::string <a class="code" href="classbdm_1_1RV.html#d05af87595cfb7fa2e0fadeae5597fa8" title="access function">name</a> ( <span class="keywordtype">int</span> at ) {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#9a87c46918c3c0db0bdca854a48a44aa" title="Array of names.">names</a> ( at );}; 
    86 <a name="l00126"></a>00126  
    87 <a name="l00128"></a><a class="code" href="classbdm_1_1RV.html#602cea0aecebc5146d81657df5127543">00128</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#602cea0aecebc5146d81657df5127543" title="access function">set_id</a> ( <span class="keywordtype">int</span> at, <span class="keywordtype">int</span> id0 ) {<a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at ) =id0;}; 
    88 <a name="l00130"></a><a class="code" href="classbdm_1_1RV.html#0b2c9e73ff66847c3644ebc3eb559a03">00130</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#0b2c9e73ff66847c3644ebc3eb559a03" title="access function">set_size</a> ( <span class="keywordtype">int</span> at, <span class="keywordtype">int</span> size0 ) {<a class="code" href="classbdm_1_1RV.html#0112d25045f6f8fabdc9e821029928ee" title="Vector of sizes.">sizes</a> ( at ) =size0; <a class="code" href="classbdm_1_1RV.html#38203096d950671def44de8cf1c6bb2e" title="size = sum of sizes">tsize</a>=sum ( <a class="code" href="classbdm_1_1RV.html#0112d25045f6f8fabdc9e821029928ee" title="Vector of sizes.">sizes</a> );}; 
    89 <a name="l00132"></a><a class="code" href="classbdm_1_1RV.html#fb2892d12dc978549e9491aed327dfd4">00132</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#fb2892d12dc978549e9491aed327dfd4" title="access function">set_time</a> ( <span class="keywordtype">int</span> at, <span class="keywordtype">int</span> time0 ) {<a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( at ) =time0;}; 
    90 <a name="l00133"></a>00133  
    91 <a name="l00135"></a>00135                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#176e9c0c35b51fee0ad8813a39883a63" title="Assign unused ids to this rv.">newids</a>(); 
    92 <a name="l00136"></a>00136         }; 
    93 <a name="l00137"></a>00137  
    94 <a name="l00139"></a>00139         RV <a class="code" href="namespacebdm.html#b9016687c0e874ca5cdcf75ae28811aa" title="Concat two random variables.">concat</a> ( <span class="keyword">const</span> RV &amp;rv1, <span class="keyword">const</span> RV &amp;rv2 ); 
    95 <a name="l00140"></a>00140  
    96 <a name="l00142"></a>00142         <span class="keyword">extern</span> RV <a class="code" href="namespacebdm.html#bdd4760f14ec7d6fea083aa2170f6236" title="Default empty RV that can be used as default argument.">RV0</a>; 
    97 <a name="l00143"></a>00143  
     67<a name="l00090"></a>00090                 <span class="comment">//TODO why not inline and later??</span> 
     68<a name="l00091"></a>00091  
     69<a name="l00093"></a>00093                 ivec <a class="code" href="classbdm_1_1RV.html#1367055b2608ad9d50d01a2da6cec869" title="Find indexes of self in another rv,.">findself</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2 ) <span class="keyword">const</span>; 
     70<a name="l00095"></a>00095                 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2 ) <span class="keyword">const</span>; 
     71<a name="l00097"></a>00097                 <span class="keywordtype">bool</span> <span class="keyword">add</span> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2 ); 
     72<a name="l00099"></a>00099                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#aec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2 ) <span class="keyword">const</span>; 
     73<a name="l00101"></a>00101                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indeces ind.">subselect</a> ( <span class="keyword">const</span> ivec &amp;ind ) <span class="keyword">const</span>; 
     74<a name="l00103"></a>00103                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indeces ind.">operator() </a>( <span class="keyword">const</span> ivec &amp;ind ) <span class="keyword">const</span>; 
     75<a name="l00105"></a>00105                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#bd77cb0899f7fba1d0e34396137b7f1f" title="Shift time shifted by delta.">t</a> ( <span class="keywordtype">int</span> delta ); 
     76<a name="l00107"></a>00107                 <a class="code" href="classbdm_1_1str.html" title="Structure of RV (used internally), i.e. expanded RVs.">str</a> <a class="code" href="classbdm_1_1RV.html#8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes">tostr</a>() <span class="keyword">const</span>; 
     77<a name="l00110"></a>00110                 ivec <a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;crv ) <span class="keyword">const</span>; 
     78<a name="l00113"></a>00113                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2, ivec &amp;selfi, ivec &amp;rv2i ) <span class="keyword">const</span>; 
     79<a name="l00115"></a><a class="code" href="classbdm_1_1RV.html#9a5c5aeeaf39299d07763377b05a8241">00115</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a> ()<span class="keyword"> const </span>{<span class="keywordflow">return</span> min ( <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> );}; 
     80<a name="l00116"></a>00116  
     81<a name="l00118"></a><a class="code" href="classbdm_1_1RV.html#ae0c6e729851a43c82a5b1c199474ef2">00118</a>                 Array&lt;std::string&gt;&amp; <a class="code" href="classbdm_1_1RV.html#ae0c6e729851a43c82a5b1c199474ef2" title="access function">_names</a>() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#9a87c46918c3c0db0bdca854a48a44aa" title="Array of names.">names</a>;}; 
     82<a name="l00119"></a>00119  
     83<a name="l00121"></a><a class="code" href="classbdm_1_1RV.html#172390b8525ef5aac684228241fff7b5">00121</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#172390b8525ef5aac684228241fff7b5" title="access function">id</a> ( <span class="keywordtype">int</span> at ) {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at );}; 
     84<a name="l00123"></a><a class="code" href="classbdm_1_1RV.html#8e64d02005a02aef72f214286977d8de">00123</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#8e64d02005a02aef72f214286977d8de" title="access function">size</a> ( <span class="keywordtype">int</span> at ) {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#0112d25045f6f8fabdc9e821029928ee" title="Vector of sizes.">sizes</a> ( at );}; 
     85<a name="l00125"></a><a class="code" href="classbdm_1_1RV.html#aff4de8185750b506492623847520518">00125</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#aff4de8185750b506492623847520518" title="access function">time</a> ( <span class="keywordtype">int</span> at ) {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( at );}; 
     86<a name="l00127"></a><a class="code" href="classbdm_1_1RV.html#d05af87595cfb7fa2e0fadeae5597fa8">00127</a>                 std::string <a class="code" href="classbdm_1_1RV.html#d05af87595cfb7fa2e0fadeae5597fa8" title="access function">name</a> ( <span class="keywordtype">int</span> at ) {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#9a87c46918c3c0db0bdca854a48a44aa" title="Array of names.">names</a> ( at );}; 
     87<a name="l00128"></a>00128  
     88<a name="l00130"></a><a class="code" href="classbdm_1_1RV.html#602cea0aecebc5146d81657df5127543">00130</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#602cea0aecebc5146d81657df5127543" title="access function">set_id</a> ( <span class="keywordtype">int</span> at, <span class="keywordtype">int</span> id0 ) {<a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at ) =id0;}; 
     89<a name="l00132"></a><a class="code" href="classbdm_1_1RV.html#0b2c9e73ff66847c3644ebc3eb559a03">00132</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#0b2c9e73ff66847c3644ebc3eb559a03" title="access function">set_size</a> ( <span class="keywordtype">int</span> at, <span class="keywordtype">int</span> size0 ) {<a class="code" href="classbdm_1_1RV.html#0112d25045f6f8fabdc9e821029928ee" title="Vector of sizes.">sizes</a> ( at ) =size0; <a class="code" href="classbdm_1_1RV.html#38203096d950671def44de8cf1c6bb2e" title="size = sum of sizes">tsize</a>=sum ( <a class="code" href="classbdm_1_1RV.html#0112d25045f6f8fabdc9e821029928ee" title="Vector of sizes.">sizes</a> );}; 
     90<a name="l00134"></a><a class="code" href="classbdm_1_1RV.html#fb2892d12dc978549e9491aed327dfd4">00134</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#fb2892d12dc978549e9491aed327dfd4" title="access function">set_time</a> ( <span class="keywordtype">int</span> at, <span class="keywordtype">int</span> time0 ) {<a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( at ) =time0;}; 
     91<a name="l00135"></a>00135  
     92<a name="l00137"></a>00137                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#176e9c0c35b51fee0ad8813a39883a63" title="Assign unused ids to this rv.">newids</a>(); 
     93<a name="l00138"></a>00138         }; 
     94<a name="l00139"></a>00139  
     95<a name="l00141"></a>00141         RV <a class="code" href="namespacebdm.html#b9016687c0e874ca5cdcf75ae28811aa" title="Concat two random variables.">concat</a> ( <span class="keyword">const</span> RV &amp;rv1, <span class="keyword">const</span> RV &amp;rv2 ); 
     96<a name="l00142"></a>00142  
     97<a name="l00144"></a>00144         <span class="keyword">extern</span> RV <a class="code" href="namespacebdm.html#bdd4760f14ec7d6fea083aa2170f6236" title="Default empty RV that can be used as default argument.">RV0</a>; 
    9898<a name="l00145"></a>00145  
    99 <a name="l00146"></a><a class="code" href="classbdm_1_1fnc.html">00146</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1fnc.html" title="Class representing function  of variable  represented by rv.">fnc</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { 
    100 <a name="l00147"></a>00147         <span class="keyword">protected</span>: 
    101 <a name="l00149"></a><a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62">00149</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>; 
    102 <a name="l00150"></a>00150         <span class="keyword">public</span>: 
    103 <a name="l00152"></a><a class="code" href="classbdm_1_1fnc.html#d3667c337c88a1c51f672688d8070409">00152</a>                 <a class="code" href="classbdm_1_1fnc.html#d3667c337c88a1c51f672688d8070409" title="default constructor">fnc</a> ( <span class="keywordtype">int</span> dy ) :<a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a> ( dy ) {}; 
    104 <a name="l00154"></a><a class="code" href="classbdm_1_1fnc.html#6277b11d7fffc7ef8a2fa3e84ae5bad4">00154</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1fnc.html#6277b11d7fffc7ef8a2fa3e84ae5bad4" title="function evaluates numerical value of  at  cond ">eval</a> ( <span class="keyword">const</span> vec &amp;cond ) { 
    105 <a name="l00155"></a>00155                         <span class="keywordflow">return</span> vec ( 0 ); 
    106 <a name="l00156"></a>00156                 }; 
    107 <a name="l00157"></a>00157  
    108 <a name="l00159"></a><a class="code" href="classbdm_1_1fnc.html#0786e40fade2663a70d654c1dda5d73e">00159</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1fnc.html#0786e40fade2663a70d654c1dda5d73e" title="function substitutes given value into an appropriate position">condition</a> ( <span class="keyword">const</span> vec &amp;val ) {}; 
    109 <a name="l00160"></a>00160  
    110 <a name="l00162"></a><a class="code" href="classbdm_1_1fnc.html#a2277a400fc9f4d6c0bf24dc7156183f">00162</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a2277a400fc9f4d6c0bf24dc7156183f" title="access function">_dimy</a>()<span class="keyword"> const</span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;} 
    111 <a name="l00163"></a>00163  
    112 <a name="l00165"></a><a class="code" href="classbdm_1_1fnc.html#66455bb4154dcf871964e30a637386d1">00165</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1fnc.html#66455bb4154dcf871964e30a637386d1" title="Destructor for future use;.">~fnc</a>() {}; 
    113 <a name="l00166"></a>00166         }; 
    114 <a name="l00167"></a>00167  
    115 <a name="l00168"></a>00168         <span class="keyword">class </span>mpdf; 
     99<a name="l00147"></a>00147  
     100<a name="l00148"></a><a class="code" href="classbdm_1_1fnc.html">00148</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1fnc.html" title="Class representing function  of variable  represented by rv.">fnc</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { 
     101<a name="l00149"></a>00149         <span class="keyword">protected</span>: 
     102<a name="l00151"></a><a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62">00151</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>; 
     103<a name="l00152"></a>00152         <span class="keyword">public</span>: 
     104<a name="l00154"></a><a class="code" href="classbdm_1_1fnc.html#d3667c337c88a1c51f672688d8070409">00154</a>                 <a class="code" href="classbdm_1_1fnc.html#d3667c337c88a1c51f672688d8070409" title="default constructor">fnc</a> ( <span class="keywordtype">int</span> dy ) :<a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a> ( dy ) {}; 
     105<a name="l00156"></a><a class="code" href="classbdm_1_1fnc.html#6277b11d7fffc7ef8a2fa3e84ae5bad4">00156</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1fnc.html#6277b11d7fffc7ef8a2fa3e84ae5bad4" title="function evaluates numerical value of  at  cond ">eval</a> ( <span class="keyword">const</span> vec &amp;cond ) { 
     106<a name="l00157"></a>00157                         <span class="keywordflow">return</span> vec ( 0 ); 
     107<a name="l00158"></a>00158                 }; 
     108<a name="l00159"></a>00159  
     109<a name="l00161"></a><a class="code" href="classbdm_1_1fnc.html#0786e40fade2663a70d654c1dda5d73e">00161</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1fnc.html#0786e40fade2663a70d654c1dda5d73e" title="function substitutes given value into an appropriate position">condition</a> ( <span class="keyword">const</span> vec &amp;val ) {}; 
     110<a name="l00162"></a>00162  
     111<a name="l00164"></a><a class="code" href="classbdm_1_1fnc.html#a2277a400fc9f4d6c0bf24dc7156183f">00164</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a2277a400fc9f4d6c0bf24dc7156183f" title="access function">_dimy</a>()<span class="keyword"> const</span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;} 
     112<a name="l00165"></a>00165  
     113<a name="l00167"></a><a class="code" href="classbdm_1_1fnc.html#66455bb4154dcf871964e30a637386d1">00167</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1fnc.html#66455bb4154dcf871964e30a637386d1" title="Destructor for future use;.">~fnc</a>() {}; 
     114<a name="l00168"></a>00168         }; 
    116115<a name="l00169"></a>00169  
     116<a name="l00170"></a>00170         <span class="keyword">class </span>mpdf; 
    117117<a name="l00171"></a>00171  
    118 <a name="l00172"></a><a class="code" href="classbdm_1_1epdf.html">00172</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { 
    119 <a name="l00173"></a>00173         <span class="keyword">protected</span>: 
    120 <a name="l00175"></a><a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8">00175</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Identified of the random variable.">rv</a>; 
    121 <a name="l00176"></a>00176         <span class="keyword">public</span>: 
    122 <a name="l00178"></a><a class="code" href="classbdm_1_1epdf.html#992f3de956fb3439c62225156aafb6f6">00178</a>                 <a class="code" href="classbdm_1_1epdf.html#992f3de956fb3439c62225156aafb6f6" title="default constructor">epdf</a>() :<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Identified of the random variable.">rv</a> ( ) {}; 
    123 <a name="l00179"></a>00179  
    124 <a name="l00181"></a><a class="code" href="classbdm_1_1epdf.html#fdfed7aa18f2870951888b1dde977415">00181</a>                 <a class="code" href="classbdm_1_1epdf.html#992f3de956fb3439c62225156aafb6f6" title="default constructor">epdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv0 ) :<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Identified of the random variable.">rv</a> ( rv0 ) {}; 
    125 <a name="l00182"></a>00182  
    126 <a name="l00183"></a>00183 <span class="comment">//      //! Returns the required moment of the epdf</span> 
    127 <a name="l00184"></a>00184 <span class="comment">//      virtual vec moment ( const int order = 1 );</span> 
    128 <a name="l00185"></a>00185  
    129 <a name="l00187"></a>00187                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#09721eb148bc49d6ec2f1956039f3a10" title="Returns a sample,  from density .">sample</a> () <span class="keyword">const</span> =0; 
    130 <a name="l00189"></a>00189                 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#b4cf45fd83cc7573ede9fe1215256058" title="Returns N samples from density .">sample_m</a> ( <span class="keywordtype">int</span> N ) <span class="keyword">const</span>; 
    131 <a name="l00190"></a>00190  
    132 <a name="l00192"></a>00192                 <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#a8e39e2ff5e5cf5471bc159530d3b2d3" title="Compute log-probability of argument val.">evallog</a> ( <span class="keyword">const</span> vec &amp;val ) <span class="keyword">const</span> =0; 
    133 <a name="l00193"></a>00193  
    134 <a name="l00195"></a><a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62">00195</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( <span class="keyword">const</span> mat &amp;Val )<span class="keyword"> const </span>{ 
    135 <a name="l00196"></a>00196                         vec x ( Val.cols() ); 
    136 <a name="l00197"></a>00197                         <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i=0;i&lt;Val.cols();i++ ) {x ( i ) =<a class="code" href="classbdm_1_1epdf.html#a8e39e2ff5e5cf5471bc159530d3b2d3" title="Compute log-probability of argument val.">evallog</a> ( Val.get_col ( i ) ) ;} 
    137 <a name="l00198"></a>00198                         <span class="keywordflow">return</span> x; 
    138 <a name="l00199"></a>00199                 } 
    139 <a name="l00201"></a><a class="code" href="classbdm_1_1epdf.html#e584eac5579c1b6384947ecf66166c77">00201</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>* <a class="code" href="classbdm_1_1epdf.html#e584eac5579c1b6384947ecf66166c77" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Identified of the random variable.">rv</a> )<span class="keyword"> const  </span>{it_warning ( <span class="stringliteral">"Not implemented"</span> ); <span class="keywordflow">return</span> NULL;} 
    140 <a name="l00203"></a><a class="code" href="classbdm_1_1epdf.html#3fb2ece54f720b62ad325e61214fa0a1">00203</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1epdf.html#3fb2ece54f720b62ad325e61214fa0a1" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Identified of the random variable.">rv</a> )<span class="keyword"> const </span>{it_warning ( <span class="stringliteral">"Not implemented"</span> ); <span class="keywordflow">return</span> NULL;} 
    141 <a name="l00204"></a>00204  
    142 <a name="l00206"></a>00206                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#565300f603ca00c989e16389d9eb42f5" title="return expected value">mean</a>() <span class="keyword">const</span> =0; 
    143 <a name="l00207"></a>00207  
    144 <a name="l00209"></a>00209                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#45c2b64faa4bf526799e4154a6ec6097" title="return expected variance (not covariance!)">variance</a>() <span class="keyword">const</span> = 0; 
    145 <a name="l00210"></a>00210  
    146 <a name="l00212"></a><a class="code" href="classbdm_1_1epdf.html#a4fa8637e7307cb051c400c2ce0ca0c8">00212</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html#a4fa8637e7307cb051c400c2ce0ca0c8" title="Destructor for future use;.">~epdf</a>() {}; 
    147 <a name="l00214"></a><a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21">00214</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="access function, possibly dangerous!">_rv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Identified of the random variable.">rv</a>;} 
    148 <a name="l00216"></a><a class="code" href="classbdm_1_1epdf.html#62e88cbce0ce77a8692f5e15d76e805f">00216</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#62e88cbce0ce77a8692f5e15d76e805f" title="modifier function - useful when copying epdfs">_renewrv</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;in_rv ) {<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Identified of the random variable.">rv</a>=in_rv;} 
    149 <a name="l00218"></a>00218         }; 
    150 <a name="l00219"></a>00219  
    151 <a name="l00220"></a>00220  
    152 <a name="l00222"></a>00222 <span class="comment">//TODO Samplecond can be generalized</span> 
    153 <a name="l00223"></a>00223  
    154 <a name="l00224"></a><a class="code" href="classbdm_1_1mpdf.html">00224</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { 
    155 <a name="l00225"></a>00225         <span class="keyword">protected</span>: 
    156 <a name="l00227"></a><a class="code" href="classbdm_1_1mpdf.html#9bcfb45435d30983f436d41c298cbb51">00227</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#9bcfb45435d30983f436d41c298cbb51" title="modeled random variable">rv</a>; 
    157 <a name="l00229"></a><a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288">00229</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>; 
    158 <a name="l00231"></a><a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0">00231</a>                 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>; 
    159 <a name="l00232"></a>00232         <span class="keyword">public</span>: 
    160 <a name="l00233"></a>00233  
    161 <a name="l00235"></a><a class="code" href="classbdm_1_1mpdf.html#e4848a428d8ef0549c6e4a9ed386d9f2">00235</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#e4848a428d8ef0549c6e4a9ed386d9f2" title="Returns a sample from the density conditioned on cond, .">samplecond</a> ( <span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">double</span> &amp;ll ) { 
    162 <a name="l00236"></a>00236                         this-&gt;<a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( cond ); 
    163 <a name="l00237"></a>00237                         vec temp= <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#09721eb148bc49d6ec2f1956039f3a10" title="Returns a sample,  from density .">sample</a>(); 
    164 <a name="l00238"></a>00238                         ll=<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#a8e39e2ff5e5cf5471bc159530d3b2d3" title="Compute log-probability of argument val.">evallog</a> ( temp );<span class="keywordflow">return</span> temp; 
    165 <a name="l00239"></a>00239                 }; 
    166 <a name="l00241"></a><a class="code" href="classbdm_1_1mpdf.html#ee26963a637b2ea1fb1933652981e652">00241</a>                 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf.html#ee26963a637b2ea1fb1933652981e652" title="Returns.">samplecond_m</a> ( <span class="keyword">const</span> vec &amp;cond, vec &amp;ll, <span class="keywordtype">int</span> N ) { 
    167 <a name="l00242"></a>00242                         this-&gt;<a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( cond ); 
    168 <a name="l00243"></a>00243                         mat temp ( <a class="code" href="classbdm_1_1mpdf.html#9bcfb45435d30983f436d41c298cbb51" title="modeled random variable">rv</a>.<a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>(),N ); vec smp ( <a class="code" href="classbdm_1_1mpdf.html#9bcfb45435d30983f436d41c298cbb51" title="modeled random variable">rv</a>.<a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>() ); 
    169 <a name="l00244"></a>00244                         <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i=0;i&lt;N;i++ ) {smp=<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#09721eb148bc49d6ec2f1956039f3a10" title="Returns a sample,  from density .">sample</a>() ;temp.set_col ( i, smp );ll ( i ) =<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#a8e39e2ff5e5cf5471bc159530d3b2d3" title="Compute log-probability of argument val.">evallog</a> ( smp );} 
    170 <a name="l00245"></a>00245                         <span class="keywordflow">return</span> temp; 
    171 <a name="l00246"></a>00246                 }; 
    172 <a name="l00248"></a><a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530">00248</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( <span class="keyword">const</span> vec &amp;cond ) {it_error ( <span class="stringliteral">"Not implemented"</span> );}; 
    173 <a name="l00249"></a>00249  
    174 <a name="l00251"></a><a class="code" href="classbdm_1_1mpdf.html#6336a8a72462e2a56a3989a220f18b1b">00251</a>                 <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf.html#6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;cond ) { 
    175 <a name="l00252"></a>00252                         <span class="keywordtype">double</span> tmp; this-&gt;<a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( cond );tmp = <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#a8e39e2ff5e5cf5471bc159530d3b2d3" title="Compute log-probability of argument val.">evallog</a> ( dt );          it_assert_debug ( std::isfinite ( tmp ),<span class="stringliteral">"Infinite value"</span> ); <span class="keywordflow">return</span> tmp; 
    176 <a name="l00253"></a>00253                 }; 
    177 <a name="l00254"></a>00254  
    178 <a name="l00256"></a><a class="code" href="classbdm_1_1mpdf.html#0b0ed1ed663071bb7cf4a1349eb94fcb">00256</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#0b0ed1ed663071bb7cf4a1349eb94fcb" title="Matrix version of evallogcond.">evallogcond_m</a> ( <span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) {this-&gt;<a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( cond );<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( Dt );}; 
    179 <a name="l00257"></a>00257  
    180 <a name="l00259"></a><a class="code" href="classbdm_1_1mpdf.html#2d83cf2a5ba40cab11dfe158ced9ee9a">00259</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html#2d83cf2a5ba40cab11dfe158ced9ee9a" title="Destructor for future use;.">~mpdf</a>() {}; 
    181 <a name="l00260"></a>00260  
    182 <a name="l00262"></a><a class="code" href="classbdm_1_1mpdf.html#5fd998aa9e223231ab20f29762e594f7">00262</a>                 <a class="code" href="classbdm_1_1mpdf.html#5fd998aa9e223231ab20f29762e594f7" title="Default constructor.">mpdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv0, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc0 ) :<a class="code" href="classbdm_1_1mpdf.html#9bcfb45435d30983f436d41c298cbb51" title="modeled random variable">rv</a> ( rv0 ),<a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ( rvc0 ) {}; 
    183 <a name="l00264"></a><a class="code" href="classbdm_1_1mpdf.html#b3aba7311038bf990d706a64cab60cf8">00264</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#b3aba7311038bf990d706a64cab60cf8" title="access function">_rvc</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;} 
    184 <a name="l00266"></a><a class="code" href="classbdm_1_1mpdf.html#222d5280e309c5a053ba73841e98c151">00266</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#222d5280e309c5a053ba73841e98c151" title="access function">_rv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#9bcfb45435d30983f436d41c298cbb51" title="modeled random variable">rv</a>;} 
    185 <a name="l00268"></a><a class="code" href="classbdm_1_1mpdf.html#1892fe3933488942253679f068e9e7f6">00268</a>                 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>&amp; <a class="code" href="classbdm_1_1mpdf.html#1892fe3933488942253679f068e9e7f6" title="access function">_epdf</a>() {<span class="keywordflow">return</span> *<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>;} 
    186 <a name="l00270"></a><a class="code" href="classbdm_1_1mpdf.html#05e843fd11c410a99dad2b88c55aca80">00270</a>                 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1mpdf.html#05e843fd11c410a99dad2b88c55aca80" title="access function">_e</a>() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>;} 
    187 <a name="l00271"></a>00271         }; 
    188 <a name="l00272"></a>00272  
    189 <a name="l00304"></a><a class="code" href="classbdm_1_1logger.html">00304</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="DataLink is a connection between two data vectors Up and Down.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { 
    190 <a name="l00305"></a>00305         <span class="keyword">protected</span>: 
    191 <a name="l00307"></a><a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f">00307</a>                 Array&lt;RV&gt; <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>; 
    192 <a name="l00309"></a><a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02">00309</a>                 Array&lt;string&gt; <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>; 
    193 <a name="l00310"></a>00310         <span class="keyword">public</span>: 
    194 <a name="l00312"></a><a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf">00312</a>                 <a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a> ( ) : <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( 0 ),<a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> ( 0 ) {} 
    195 <a name="l00313"></a>00313  
    196 <a name="l00315"></a><a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1">00315</a>                 <span class="keyword">virtual</span> <span class="keywordtype">int</span> <span class="keyword">add</span> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keywordtype">string</span> name=<span class="stringliteral">""</span> ) { 
    197 <a name="l00316"></a>00316                         <span class="keywordtype">int</span> <span class="keywordtype">id</span>=<a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length(); 
    198 <a name="l00317"></a>00317                         <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>=<a class="code" href="namespacebdm.html#b9016687c0e874ca5cdcf75ae28811aa" title="Concat two random variables.">concat</a> ( <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, name ); <span class="comment">// diff</span> 
    199 <a name="l00318"></a>00318                         <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length ( <span class="keywordtype">id</span>+1,<span class="keyword">true</span> ); 
    200 <a name="l00319"></a>00319                         <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( <span class="keywordtype">id</span> ) = rv; 
    201 <a name="l00320"></a>00320                         <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span> 
     118<a name="l00173"></a>00173  
     119<a name="l00174"></a><a class="code" href="classbdm_1_1epdf.html">00174</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { 
     120<a name="l00175"></a>00175         <span class="keyword">protected</span>: 
     121<a name="l00177"></a><a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8">00177</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Identified of the random variable.">rv</a>; 
     122<a name="l00178"></a>00178         <span class="keyword">public</span>: 
     123<a name="l00180"></a><a class="code" href="classbdm_1_1epdf.html#992f3de956fb3439c62225156aafb6f6">00180</a>                 <a class="code" href="classbdm_1_1epdf.html#992f3de956fb3439c62225156aafb6f6" title="default constructor">epdf</a>() :<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Identified of the random variable.">rv</a> ( ) {}; 
     124<a name="l00181"></a>00181  
     125<a name="l00183"></a><a class="code" href="classbdm_1_1epdf.html#fdfed7aa18f2870951888b1dde977415">00183</a>                 <a class="code" href="classbdm_1_1epdf.html#992f3de956fb3439c62225156aafb6f6" title="default constructor">epdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv0 ) :<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Identified of the random variable.">rv</a> ( rv0 ) {}; 
     126<a name="l00184"></a>00184  
     127<a name="l00185"></a>00185 <span class="comment">//      //! Returns the required moment of the epdf</span> 
     128<a name="l00186"></a>00186 <span class="comment">//      virtual vec moment ( const int order = 1 );</span> 
     129<a name="l00187"></a>00187  
     130<a name="l00189"></a>00189                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#09721eb148bc49d6ec2f1956039f3a10" title="Returns a sample,  from density .">sample</a> () <span class="keyword">const</span> =0; 
     131<a name="l00191"></a>00191                 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#b4cf45fd83cc7573ede9fe1215256058" title="Returns N samples from density .">sample_m</a> ( <span class="keywordtype">int</span> N ) <span class="keyword">const</span>; 
     132<a name="l00192"></a>00192  
     133<a name="l00194"></a>00194                 <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#a8e39e2ff5e5cf5471bc159530d3b2d3" title="Compute log-probability of argument val.">evallog</a> ( <span class="keyword">const</span> vec &amp;val ) <span class="keyword">const</span> =0; 
     134<a name="l00195"></a>00195  
     135<a name="l00197"></a><a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62">00197</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( <span class="keyword">const</span> mat &amp;Val )<span class="keyword"> const </span>{ 
     136<a name="l00198"></a>00198                         vec x ( Val.cols() ); 
     137<a name="l00199"></a>00199                         <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i=0;i&lt;Val.cols();i++ ) {x ( i ) =<a class="code" href="classbdm_1_1epdf.html#a8e39e2ff5e5cf5471bc159530d3b2d3" title="Compute log-probability of argument val.">evallog</a> ( Val.get_col ( i ) ) ;} 
     138<a name="l00200"></a>00200                         <span class="keywordflow">return</span> x; 
     139<a name="l00201"></a>00201                 } 
     140<a name="l00203"></a><a class="code" href="classbdm_1_1epdf.html#e584eac5579c1b6384947ecf66166c77">00203</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>* <a class="code" href="classbdm_1_1epdf.html#e584eac5579c1b6384947ecf66166c77" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Identified of the random variable.">rv</a> )<span class="keyword"> const  </span>{it_warning ( <span class="stringliteral">"Not implemented"</span> ); <span class="keywordflow">return</span> NULL;} 
     141<a name="l00205"></a><a class="code" href="classbdm_1_1epdf.html#3fb2ece54f720b62ad325e61214fa0a1">00205</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1epdf.html#3fb2ece54f720b62ad325e61214fa0a1" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Identified of the random variable.">rv</a> )<span class="keyword"> const </span>{it_warning ( <span class="stringliteral">"Not implemented"</span> ); <span class="keywordflow">return</span> NULL;} 
     142<a name="l00206"></a>00206  
     143<a name="l00208"></a>00208                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#565300f603ca00c989e16389d9eb42f5" title="return expected value">mean</a>() <span class="keyword">const</span> =0; 
     144<a name="l00209"></a>00209  
     145<a name="l00211"></a>00211                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#45c2b64faa4bf526799e4154a6ec6097" title="return expected variance (not covariance!)">variance</a>() <span class="keyword">const</span> = 0; 
     146<a name="l00212"></a>00212  
     147<a name="l00214"></a><a class="code" href="classbdm_1_1epdf.html#a4fa8637e7307cb051c400c2ce0ca0c8">00214</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html#a4fa8637e7307cb051c400c2ce0ca0c8" title="Destructor for future use;.">~epdf</a>() {}; 
     148<a name="l00216"></a><a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21">00216</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="access function, possibly dangerous!">_rv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Identified of the random variable.">rv</a>;} 
     149<a name="l00218"></a><a class="code" href="classbdm_1_1epdf.html#62e88cbce0ce77a8692f5e15d76e805f">00218</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#62e88cbce0ce77a8692f5e15d76e805f" title="modifier function - useful when copying epdfs">_renewrv</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;in_rv ) {<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Identified of the random variable.">rv</a>=in_rv;} 
     150<a name="l00220"></a>00220         }; 
     151<a name="l00221"></a>00221  
     152<a name="l00222"></a>00222  
     153<a name="l00224"></a>00224 <span class="comment">//TODO Samplecond can be generalized</span> 
     154<a name="l00225"></a>00225  
     155<a name="l00226"></a><a class="code" href="classbdm_1_1mpdf.html">00226</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { 
     156<a name="l00227"></a>00227         <span class="keyword">protected</span>: 
     157<a name="l00229"></a><a class="code" href="classbdm_1_1mpdf.html#9bcfb45435d30983f436d41c298cbb51">00229</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#9bcfb45435d30983f436d41c298cbb51" title="modeled random variable">rv</a>; 
     158<a name="l00231"></a><a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288">00231</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>; 
     159<a name="l00233"></a><a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0">00233</a>                 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>; 
     160<a name="l00234"></a>00234         <span class="keyword">public</span>: 
     161<a name="l00235"></a>00235  
     162<a name="l00237"></a><a class="code" href="classbdm_1_1mpdf.html#f0c1db6fcbb3aae2dd6123884457a367">00237</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#f0c1db6fcbb3aae2dd6123884457a367" title="Returns a sample from the density conditioned on cond, .">samplecond</a> ( <span class="keyword">const</span> vec &amp;cond) { 
     163<a name="l00238"></a>00238                         this-&gt;<a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( cond ); 
     164<a name="l00239"></a>00239                         vec temp= <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#09721eb148bc49d6ec2f1956039f3a10" title="Returns a sample,  from density .">sample</a>(); 
     165<a name="l00240"></a>00240                         <span class="keywordflow">return</span> temp; 
     166<a name="l00241"></a>00241                 }; 
     167<a name="l00243"></a><a class="code" href="classbdm_1_1mpdf.html#ee26963a637b2ea1fb1933652981e652">00243</a>                 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf.html#ee26963a637b2ea1fb1933652981e652" title="Returns.">samplecond_m</a> ( <span class="keyword">const</span> vec &amp;cond, vec &amp;ll, <span class="keywordtype">int</span> N ) { 
     168<a name="l00244"></a>00244                         this-&gt;<a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( cond ); 
     169<a name="l00245"></a>00245                         mat temp ( <a class="code" href="classbdm_1_1mpdf.html#9bcfb45435d30983f436d41c298cbb51" title="modeled random variable">rv</a>.<a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>(),N ); vec smp ( <a class="code" href="classbdm_1_1mpdf.html#9bcfb45435d30983f436d41c298cbb51" title="modeled random variable">rv</a>.<a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>() ); 
     170<a name="l00246"></a>00246                         <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i=0;i&lt;N;i++ ) {smp=<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#09721eb148bc49d6ec2f1956039f3a10" title="Returns a sample,  from density .">sample</a>() ;temp.set_col ( i, smp );ll ( i ) =<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#a8e39e2ff5e5cf5471bc159530d3b2d3" title="Compute log-probability of argument val.">evallog</a> ( smp );} 
     171<a name="l00247"></a>00247                         <span class="keywordflow">return</span> temp; 
     172<a name="l00248"></a>00248                 }; 
     173<a name="l00250"></a><a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530">00250</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( <span class="keyword">const</span> vec &amp;cond ) {it_error ( <span class="stringliteral">"Not implemented"</span> );}; 
     174<a name="l00251"></a>00251  
     175<a name="l00253"></a><a class="code" href="classbdm_1_1mpdf.html#6336a8a72462e2a56a3989a220f18b1b">00253</a>                 <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf.html#6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;cond ) { 
     176<a name="l00254"></a>00254                         <span class="keywordtype">double</span> tmp; this-&gt;<a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( cond );tmp = <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#a8e39e2ff5e5cf5471bc159530d3b2d3" title="Compute log-probability of argument val.">evallog</a> ( dt );          it_assert_debug ( std::isfinite ( tmp ),<span class="stringliteral">"Infinite value"</span> ); <span class="keywordflow">return</span> tmp; 
     177<a name="l00255"></a>00255                 }; 
     178<a name="l00256"></a>00256  
     179<a name="l00258"></a><a class="code" href="classbdm_1_1mpdf.html#0b0ed1ed663071bb7cf4a1349eb94fcb">00258</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#0b0ed1ed663071bb7cf4a1349eb94fcb" title="Matrix version of evallogcond.">evallogcond_m</a> ( <span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) {this-&gt;<a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( cond );<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( Dt );}; 
     180<a name="l00259"></a>00259  
     181<a name="l00261"></a><a class="code" href="classbdm_1_1mpdf.html#2d83cf2a5ba40cab11dfe158ced9ee9a">00261</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html#2d83cf2a5ba40cab11dfe158ced9ee9a" title="Destructor for future use;.">~mpdf</a>() {}; 
     182<a name="l00262"></a>00262  
     183<a name="l00264"></a><a class="code" href="classbdm_1_1mpdf.html#5fd998aa9e223231ab20f29762e594f7">00264</a>                 <a class="code" href="classbdm_1_1mpdf.html#5fd998aa9e223231ab20f29762e594f7" title="Default constructor.">mpdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv0, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc0 ) :<a class="code" href="classbdm_1_1mpdf.html#9bcfb45435d30983f436d41c298cbb51" title="modeled random variable">rv</a> ( rv0 ),<a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ( rvc0 ) {}; 
     184<a name="l00266"></a><a class="code" href="classbdm_1_1mpdf.html#b3aba7311038bf990d706a64cab60cf8">00266</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#b3aba7311038bf990d706a64cab60cf8" title="access function">_rvc</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;} 
     185<a name="l00268"></a><a class="code" href="classbdm_1_1mpdf.html#222d5280e309c5a053ba73841e98c151">00268</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#222d5280e309c5a053ba73841e98c151" title="access function">_rv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#9bcfb45435d30983f436d41c298cbb51" title="modeled random variable">rv</a>;} 
     186<a name="l00270"></a><a class="code" href="classbdm_1_1mpdf.html#1892fe3933488942253679f068e9e7f6">00270</a>                 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>&amp; <a class="code" href="classbdm_1_1mpdf.html#1892fe3933488942253679f068e9e7f6" title="access function">_epdf</a>() {<span class="keywordflow">return</span> *<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>;} 
     187<a name="l00272"></a><a class="code" href="classbdm_1_1mpdf.html#05e843fd11c410a99dad2b88c55aca80">00272</a>                 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1mpdf.html#05e843fd11c410a99dad2b88c55aca80" title="access function">_e</a>() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>;} 
     188<a name="l00273"></a>00273         }; 
     189<a name="l00274"></a>00274  
     190<a name="l00300"></a><a class="code" href="classbdm_1_1datalink__e2e.html">00300</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__e2e.html" title="DataLink is a connection between two data vectors Up and Down.">datalink_e2e</a> { 
     191<a name="l00301"></a>00301         <span class="keyword">protected</span>: 
     192<a name="l00303"></a><a class="code" href="classbdm_1_1datalink__e2e.html#eb4ee03764c2531083ec19759b7a52d3">00303</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__e2e.html#eb4ee03764c2531083ec19759b7a52d3" title="Remember how long val should be.">valsize</a>; 
     193<a name="l00305"></a><a class="code" href="classbdm_1_1datalink__e2e.html#ed0830e7a13f4f0f4beaae939cf11f6b">00305</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__e2e.html#ed0830e7a13f4f0f4beaae939cf11f6b" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">valupsize</a>; 
     194<a name="l00307"></a><a class="code" href="classbdm_1_1datalink__e2e.html#fa38045c8f1230757d62d38e71a49b97">00307</a>                 ivec <a class="code" href="classbdm_1_1datalink__e2e.html#fa38045c8f1230757d62d38e71a49b97" title="val-to-val link, indeces of the upper val">v2v_up</a>; 
     195<a name="l00308"></a>00308         <span class="keyword">public</span>: 
     196<a name="l00310"></a><a class="code" href="classbdm_1_1datalink__e2e.html#c85912b85a0a47ff0931d07e2d653264">00310</a>                 <a class="code" href="classbdm_1_1datalink__e2e.html#c85912b85a0a47ff0931d07e2d653264" title="Constructor.">datalink_e2e</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up ) : 
     197<a name="l00311"></a>00311                                 <a class="code" href="classbdm_1_1datalink__e2e.html#eb4ee03764c2531083ec19759b7a52d3" title="Remember how long val should be.">valsize</a> ( rv.count() ), <a class="code" href="classbdm_1_1datalink__e2e.html#ed0830e7a13f4f0f4beaae939cf11f6b" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">valupsize</a> ( rv_up.count() ), <a class="code" href="classbdm_1_1datalink__e2e.html#fa38045c8f1230757d62d38e71a49b97" title="val-to-val link, indeces of the upper val">v2v_up</a> ( rv.dataind ( rv_up ) )  { 
     198<a name="l00312"></a>00312                         it_assert_debug ( <a class="code" href="classbdm_1_1datalink__e2e.html#fa38045c8f1230757d62d38e71a49b97" title="val-to-val link, indeces of the upper val">v2v_up</a>.length() ==<a class="code" href="classbdm_1_1datalink__e2e.html#eb4ee03764c2531083ec19759b7a52d3" title="Remember how long val should be.">valsize</a>,<span class="stringliteral">"rv is not fully in rv_up"</span> ); 
     199<a name="l00313"></a>00313                 } 
     200<a name="l00315"></a><a class="code" href="classbdm_1_1datalink__e2e.html#4938c157340dc0dbc8f7bd3491678d86">00315</a>                 vec <a class="code" href="classbdm_1_1datalink__e2e.html#4938c157340dc0dbc8f7bd3491678d86" title="Get val for myself from val of &amp;quot;Up&amp;quot;.">get_val</a> ( <span class="keyword">const</span> vec &amp;val_up ) {it_assert_debug ( <a class="code" href="classbdm_1_1datalink__e2e.html#ed0830e7a13f4f0f4beaae939cf11f6b" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">valupsize</a>==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); <span class="keywordflow">return</span> get_vec ( val_up,<a class="code" href="classbdm_1_1datalink__e2e.html#fa38045c8f1230757d62d38e71a49b97" title="val-to-val link, indeces of the upper val">v2v_up</a> );} 
     201<a name="l00317"></a><a class="code" href="classbdm_1_1datalink__e2e.html#7646ec2f0f83bee2852e0fae6b0756a2">00317</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__e2e.html#7646ec2f0f83bee2852e0fae6b0756a2" title="Fill val of &amp;quot;Up&amp;quot; by my pieces.">fill_val</a> ( vec &amp;val_up, <span class="keyword">const</span> vec &amp;val ) { 
     202<a name="l00318"></a>00318                         it_assert_debug ( <a class="code" href="classbdm_1_1datalink__e2e.html#eb4ee03764c2531083ec19759b7a52d3" title="Remember how long val should be.">valsize</a>==val.length(),<span class="stringliteral">"Wrong val"</span> ); 
     203<a name="l00319"></a>00319                         it_assert_debug ( <a class="code" href="classbdm_1_1datalink__e2e.html#ed0830e7a13f4f0f4beaae939cf11f6b" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">valupsize</a>==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); 
     204<a name="l00320"></a>00320                         set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink__e2e.html#fa38045c8f1230757d62d38e71a49b97" title="val-to-val link, indeces of the upper val">v2v_up</a>, val ); 
    202205<a name="l00321"></a>00321                 } 
    203 <a name="l00322"></a>00322  
    204 <a name="l00324"></a>00324                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &amp;v ) =0; 
    205 <a name="l00325"></a>00325  
    206 <a name="l00327"></a>00327                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#4f31c03578a7b9b30d8b1f8c338a37e8" title="Shifts storage position for another time step.">step</a>() =0; 
    207 <a name="l00328"></a>00328  
    208 <a name="l00330"></a><a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d">00330</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {}; 
    209 <a name="l00331"></a>00331  
    210 <a name="l00333"></a><a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc">00333</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {}; 
    211 <a name="l00334"></a>00334  
    212 <a name="l00336"></a><a class="code" href="classbdm_1_1logger.html#f2ade56238a5d408e65a77c53f516448">00336</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1logger.html#f2ade56238a5d408e65a77c53f516448" title="for future use">~logger</a>() {}; 
    213 <a name="l00337"></a>00337         }; 
    214 <a name="l00338"></a>00338  
    215 <a name="l00339"></a>00339         <span class="keyword">class </span>datalink_e2e { 
    216 <a name="l00340"></a>00340         <span class="keyword">protected</span>: 
    217 <a name="l00342"></a>00342                 <span class="keywordtype">int</span> valsize; 
    218 <a name="l00344"></a>00344                 <span class="keywordtype">int</span> valupsize; 
    219 <a name="l00346"></a>00346                 ivec v2v_up; 
    220 <a name="l00347"></a>00347         <span class="keyword">public</span>: 
    221 <a name="l00349"></a>00349                 datalink_e2e ( <span class="keyword">const</span> RV &amp;rv, <span class="keyword">const</span> RV &amp;rv_up ) : 
    222 <a name="l00350"></a>00350                                 valsize ( rv.count() ), valupsize ( rv_up.count() ), v2v_up ( rv.dataind ( rv_up ) )  { 
    223 <a name="l00351"></a>00351                         it_assert_debug ( v2v_up.length() ==valsize,<span class="stringliteral">"rv is not fully in rv_up"</span> ); 
     206<a name="l00322"></a>00322         }; 
     207<a name="l00323"></a>00323  
     208<a name="l00325"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00325</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__e2e.html" title="DataLink is a connection between two data vectors Up and Down.">datalink_e2e</a> { 
     209<a name="l00326"></a>00326         <span class="keyword">protected</span>: 
     210<a name="l00328"></a><a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9">00328</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>; 
     211<a name="l00330"></a><a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783">00330</a>                 ivec <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>; 
     212<a name="l00332"></a><a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc">00332</a>                 ivec <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>; 
     213<a name="l00333"></a>00333  
     214<a name="l00334"></a>00334         <span class="keyword">public</span>: 
     215<a name="l00336"></a><a class="code" href="classbdm_1_1datalink__m2e.html#31bb5b6cd04b4d99a02fc8d1ad5ce202">00336</a>                 <a class="code" href="classbdm_1_1datalink__m2e.html#31bb5b6cd04b4d99a02fc8d1ad5ce202" title="Constructor.">datalink_m2e</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv,  <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up ) : 
     216<a name="l00337"></a>00337                                 <a class="code" href="classbdm_1_1datalink__e2e.html" title="DataLink is a connection between two data vectors Up and Down.">datalink_e2e</a> ( rv,rv_up ), <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ( rvc.count() ) { 
     217<a name="l00338"></a>00338                         <span class="comment">//establish v2c connection</span> 
     218<a name="l00339"></a>00339                         rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rv_up, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ); 
     219<a name="l00340"></a>00340                 } 
     220<a name="l00342"></a><a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703">00342</a>                 vec <a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> ( <span class="keyword">const</span> vec &amp;val_up ) { 
     221<a name="l00343"></a>00343                         vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ); 
     222<a name="l00344"></a>00344                         set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>,val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ) ); 
     223<a name="l00345"></a>00345                         <span class="keywordflow">return</span> tmp; 
     224<a name="l00346"></a>00346                 } 
     225<a name="l00347"></a>00347                 <span class="keywordtype">void</span> fill_val_cond ( vec &amp;val_up, <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond ) { 
     226<a name="l00348"></a>00348                         it_assert_debug ( <a class="code" href="classbdm_1_1datalink__e2e.html#eb4ee03764c2531083ec19759b7a52d3" title="Remember how long val should be.">valsize</a>==val.length(),<span class="stringliteral">"Wrong val"</span> ); 
     227<a name="l00349"></a>00349                         it_assert_debug ( <a class="code" href="classbdm_1_1datalink__e2e.html#ed0830e7a13f4f0f4beaae939cf11f6b" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">valupsize</a>==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); 
     228<a name="l00350"></a>00350                         set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink__e2e.html#fa38045c8f1230757d62d38e71a49b97" title="val-to-val link, indeces of the upper val">v2v_up</a>, val ); 
     229<a name="l00351"></a>00351                         set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>, cond ); 
    224230<a name="l00352"></a>00352                 } 
    225 <a name="l00354"></a>00354                 vec get_val ( <span class="keyword">const</span> vec &amp;val_up ) {it_assert_debug ( valupsize==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); <span class="keywordflow">return</span> get_vec ( val_up,v2v_up );} 
    226 <a name="l00356"></a>00356                 <span class="keywordtype">void</span> fill_val ( vec &amp;val_up, <span class="keyword">const</span> vec &amp;val ) { 
    227 <a name="l00357"></a>00357                         it_assert_debug ( valsize==val.length(),<span class="stringliteral">"Wrong val"</span> ); 
    228 <a name="l00358"></a>00358                         it_assert_debug ( valupsize==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); 
    229 <a name="l00359"></a>00359                         set_subvector ( val_up, v2v_up, val ); 
    230 <a name="l00360"></a>00360                 } 
    231 <a name="l00361"></a>00361         }; 
    232 <a name="l00362"></a>00362  
    233 <a name="l00364"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00364</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a>: <span class="keyword">public</span> datalink_e2e { 
    234 <a name="l00365"></a>00365         <span class="keyword">protected</span>: 
    235 <a name="l00367"></a><a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9">00367</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>; 
    236 <a name="l00369"></a><a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783">00369</a>                 ivec <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>; 
    237 <a name="l00371"></a><a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc">00371</a>                 ivec <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>; 
    238 <a name="l00372"></a>00372  
    239 <a name="l00373"></a>00373         <span class="keyword">public</span>: 
    240 <a name="l00375"></a><a class="code" href="classbdm_1_1datalink__m2e.html#31bb5b6cd04b4d99a02fc8d1ad5ce202">00375</a>                 <a class="code" href="classbdm_1_1datalink__m2e.html#31bb5b6cd04b4d99a02fc8d1ad5ce202" title="Constructor.">datalink_m2e</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv,  <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up ) : 
    241 <a name="l00376"></a>00376                                 datalink_e2e ( rv,rv_up ), <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ( rvc.count() ) { 
    242 <a name="l00377"></a>00377                         <span class="comment">//establish v2c connection</span> 
    243 <a name="l00378"></a>00378                         rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rv_up, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ); 
    244 <a name="l00379"></a>00379                 } 
    245 <a name="l00381"></a><a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703">00381</a>                 vec <a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> ( <span class="keyword">const</span> vec &amp;val_up ) { 
    246 <a name="l00382"></a>00382                         vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ); 
    247 <a name="l00383"></a>00383                         set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>,val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ) ); 
    248 <a name="l00384"></a>00384                         <span class="keywordflow">return</span> tmp; 
    249 <a name="l00385"></a>00385                 } 
    250 <a name="l00386"></a>00386                 <span class="keywordtype">void</span> fill_val_cond ( vec &amp;val_up, <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond ) { 
    251 <a name="l00387"></a>00387                         it_assert_debug ( valsize==val.length(),<span class="stringliteral">"Wrong val"</span> ); 
    252 <a name="l00388"></a>00388                         it_assert_debug ( valupsize==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); 
    253 <a name="l00389"></a>00389                         set_subvector ( val_up, v2v_up, val ); 
    254 <a name="l00390"></a>00390                         set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>, cond ); 
    255 <a name="l00391"></a>00391                 } 
    256 <a name="l00392"></a>00392         }; 
    257 <a name="l00395"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00395</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a> { 
    258 <a name="l00396"></a>00396         <span class="keyword">protected</span>: 
    259 <a name="l00398"></a><a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d">00398</a>                 ivec <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a>; 
    260 <a name="l00400"></a><a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5">00400</a>                 ivec <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>; 
    261 <a name="l00401"></a>00401         <span class="keyword">public</span>: 
    262 <a name="l00403"></a><a class="code" href="classbdm_1_1datalink__m2m.html#540c4b60686fdf1a7915300ae11bc41b">00403</a>                 <a class="code" href="classbdm_1_1datalink__m2m.html#540c4b60686fdf1a7915300ae11bc41b" title="Constructor.">datalink_m2m</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc_up ) : 
    263 <a name="l00404"></a>00404                                 <a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a> ( rv, rvc, rv_up ) { 
    264 <a name="l00405"></a>00405                         <span class="comment">//establish c2c connection</span> 
    265 <a name="l00406"></a>00406                         rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a> ); 
    266 <a name="l00407"></a>00407                         it_assert_debug ( <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>.length() +<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>.length() ==<a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">"cond is not fully given"</span> ); 
    267 <a name="l00408"></a>00408                 } 
    268 <a name="l00410"></a><a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90">00410</a>                 vec <a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &amp;quot;Up&amp;quot;.">get_cond</a> ( <span class="keyword">const</span> vec &amp;val_up, <span class="keyword">const</span> vec &amp;cond_up ) { 
    269 <a name="l00411"></a>00411                         vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ); 
    270 <a name="l00412"></a>00412                         set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>,val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ) ); 
    271 <a name="l00413"></a>00413                         set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>,cond_up ( <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a> ) ); 
    272 <a name="l00414"></a>00414                         <span class="keywordflow">return</span> tmp; 
    273 <a name="l00415"></a>00415                 } 
    274 <a name="l00417"></a>00417  
    275 <a name="l00418"></a>00418         }; 
    276 <a name="l00419"></a>00419  
    277 <a name="l00423"></a><a class="code" href="classbdm_1_1mepdf.html">00423</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> { 
    278 <a name="l00424"></a>00424         <span class="keyword">public</span>: 
    279 <a name="l00426"></a><a class="code" href="classbdm_1_1mepdf.html#27cc32d1a810516c25bda51ddf886376">00426</a>                 <a class="code" href="classbdm_1_1mepdf.html#27cc32d1a810516c25bda51ddf886376" title="Default constructor.">mepdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* em ) :<a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> ( em-&gt;<a class="code" href="classbdm_1_1mpdf.html#222d5280e309c5a053ba73841e98c151" title="access function">_rv</a>(),<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>() ) {<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>=<span class="keyword">const_cast&lt;</span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>*<span class="keyword">&gt;</span> ( em );}; 
    280 <a name="l00427"></a><a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c">00427</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( <span class="keyword">const</span> vec &amp;cond ) {} 
    281 <a name="l00428"></a>00428         }; 
    282 <a name="l00429"></a>00429  
    283 <a name="l00432"></a><a class="code" href="classbdm_1_1compositepdf.html">00432</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1compositepdf.html" title="Abstract composition of pdfs, will be used for specific classes this abstract class...">compositepdf</a> { 
    284 <a name="l00433"></a>00433         <span class="keyword">protected</span>: 
    285 <a name="l00435"></a><a class="code" href="classbdm_1_1compositepdf.html#7ca3cd8ed92a7154f5b9ff13b1e9d52a">00435</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1compositepdf.html#7ca3cd8ed92a7154f5b9ff13b1e9d52a" title="Number of mpdfs in the composite.">n</a>; 
    286 <a name="l00437"></a><a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a">00437</a>                 Array&lt;mpdf*&gt; <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>; 
    287 <a name="l00438"></a>00438         <span class="keyword">public</span>: 
    288 <a name="l00439"></a>00439                 <a class="code" href="classbdm_1_1compositepdf.html" title="Abstract composition of pdfs, will be used for specific classes this abstract class...">compositepdf</a> ( Array&lt;mpdf*&gt; A0 ) : <a class="code" href="classbdm_1_1compositepdf.html#7ca3cd8ed92a7154f5b9ff13b1e9d52a" title="Number of mpdfs in the composite.">n</a> ( A0.length() ), <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a> ( A0 ) {}; 
    289 <a name="l00441"></a>00441                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1compositepdf.html#c73d39acc4378eee6a63155c3517d3c9" title="find common rv, flag">getrv</a> ( <span class="keywordtype">bool</span> checkoverlap=<span class="keyword">false</span> ); 
    290 <a name="l00443"></a>00443                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1compositepdf.html#c71fc2c51f49d797e61f479f543c75ce" title="common rvc of all mpdfs is written to rvc">setrvc</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc ); 
    291 <a name="l00444"></a>00444         }; 
    292 <a name="l00445"></a>00445  
    293 <a name="l00453"></a><a class="code" href="classbdm_1_1DS.html">00453</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { 
    294 <a name="l00454"></a>00454         <span class="keyword">protected</span>: 
    295 <a name="l00456"></a><a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec">00456</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a>; 
    296 <a name="l00458"></a><a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702">00458</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Action variables, accepted by write().">Urv</a>; <span class="comment">//</span> 
    297 <a name="l00460"></a><a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867">00460</a> <span class="comment"></span>                <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut; 
    298 <a name="l00461"></a>00461         <span class="keyword">public</span>: 
    299 <a name="l00462"></a>00462                 <a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a>() :<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a> ( <a class="code" href="namespacebdm.html#bdd4760f14ec7d6fea083aa2170f6236" title="Default empty RV that can be used as default argument.">RV0</a> ),<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Action variables, accepted by write().">Urv</a> ( <a class="code" href="namespacebdm.html#bdd4760f14ec7d6fea083aa2170f6236" title="Default empty RV that can be used as default argument.">RV0</a> ) {}; 
    300 <a name="l00463"></a>00463                 <a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;Drv0, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;Urv0 ) :<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a> ( Drv0 ),<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Action variables, accepted by write().">Urv</a> ( Urv0 ) {}; 
    301 <a name="l00465"></a><a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba">00465</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; 
    302 <a name="l00467"></a><a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832">00467</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt, <span class="keyword">const</span> ivec &amp;indeces ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; 
    303 <a name="l00469"></a><a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a">00469</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> ( vec &amp;ut ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; 
    304 <a name="l00471"></a><a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d">00471</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> ( vec &amp;ut, <span class="keyword">const</span> ivec &amp;indeces ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; 
    305 <a name="l00472"></a>00472  
    306 <a name="l00474"></a>00474                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#9a14c64d881e838ddc3a5617ee8a973b" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>() =0; 
    307 <a name="l00475"></a>00475  
    308 <a name="l00477"></a><a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e">00477</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="DataLink is a connection between two data vectors Up and Down.">logger</a> &amp;L ) { 
    309 <a name="l00478"></a>00478                         <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>=L.<a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1" title="returns an identifier which will be later needed for calling the log() function">add</a> ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a>,<span class="stringliteral">""</span> ); 
    310 <a name="l00479"></a>00479                         L_ut=L.<a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1" title="returns an identifier which will be later needed for calling the log() function">add</a> ( <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Action variables, accepted by write().">Urv</a>,<span class="stringliteral">""</span> ); 
    311 <a name="l00480"></a>00480                 } 
    312 <a name="l00482"></a><a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf">00482</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="DataLink is a connection between two data vectors Up and Down.">logger</a> &amp;L ) { 
    313 <a name="l00483"></a>00483                         vec tmp(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>()+<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Action variables, accepted by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>()); 
    314 <a name="l00484"></a>00484                         <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a>(tmp); 
    315 <a name="l00485"></a>00485                         <span class="comment">// d is first in getdata</span> 
    316 <a name="l00486"></a>00486                         L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>,tmp.left ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>() ) ); 
    317 <a name="l00487"></a>00487                         <span class="comment">// u follows after d in getdata</span> 
    318 <a name="l00488"></a>00488                         L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( L_ut,tmp.mid ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>(), <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Action variables, accepted by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>() ) ); 
    319 <a name="l00489"></a>00489                 } 
    320 <a name="l00490"></a>00490         }; 
    321 <a name="l00491"></a>00491  
    322 <a name="l00496"></a><a class="code" href="classbdm_1_1BM.html">00496</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of the world, i.e. all uncertainty is modeled by probabilities.">BM</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { 
    323 <a name="l00497"></a>00497         <span class="keyword">protected</span>: 
    324 <a name="l00499"></a><a class="code" href="classbdm_1_1BM.html#18d6db4af8ee42077741d9e3618153ca">00499</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rv; 
    325 <a name="l00501"></a><a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a">00501</a>                 <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; 
    326 <a name="l00503"></a><a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee">00503</a>                 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>; 
    327 <a name="l00504"></a>00504         <span class="keyword">public</span>: 
    328 <a name="l00505"></a>00505  
    329 <a name="l00507"></a><a class="code" href="classbdm_1_1BM.html#a33000bb124c32e58742f056ecab4293">00507</a>                 <a class="code" href="classbdm_1_1BM.html#a33000bb124c32e58742f056ecab4293" title="Default constructor.">BM</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv0, <span class="keywordtype">double</span> ll0=0,<span class="keywordtype">bool</span> evalll0=<span class="keyword">true</span> ) :rv ( rv0 ), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( ll0 ),<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( evalll0 ) {<span class="comment">//Fixme: test rv</span> 
    330 <a name="l00508"></a>00508                 }; 
    331 <a name="l00510"></a><a class="code" href="classbdm_1_1BM.html#241b3701190ff1f729fe873a2eef0055">00510</a>                 <a class="code" href="classbdm_1_1BM.html#a33000bb124c32e58742f056ecab4293" title="Default constructor.">BM</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of the world, i.e. all uncertainty is modeled by probabilities.">BM</a> &amp;B ) : rv ( B.rv ), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( B.<a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ), <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( B.<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ) {} 
    332 <a name="l00511"></a>00511  
    333 <a name="l00515"></a>00515                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> ( <span class="keyword">const</span> vec &amp;dt ) = 0; 
    334 <a name="l00517"></a>00517                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> ( <span class="keyword">const</span> mat &amp;Dt ); 
    335 <a name="l00519"></a>00519                 <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>&amp; <a class="code" href="classbdm_1_1BM.html#963258c4c2dd05be001003b19aceefef" title="Returns a reference to the epdf representing posterior density on parameters.">_epdf</a>() <span class="keyword">const</span> =0; 
    336 <a name="l00520"></a>00520  
    337 <a name="l00522"></a>00522                 <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#4ed0f8b880e606316ae800f3a011c3a6" title="Returns a pointer to the epdf representing posterior density on parameters. Use with...">_e</a>() <span class="keyword">const</span> =0; 
    338 <a name="l00523"></a>00523  
    339 <a name="l00526"></a><a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">00526</a>                 <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( <span class="keyword">const</span> vec &amp;dt )<span class="keyword"> const</span>{it_error ( <span class="stringliteral">"Not implemented"</span> );<span class="keywordflow">return</span> 0.0;} 
    340 <a name="l00528"></a><a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae">00528</a>                 vec <a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> ( <span class="keyword">const</span> mat &amp;dt )<span class="keyword"> const</span>{vec tmp ( dt.cols() );<span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i=0;i&lt;dt.cols();i++ ) {tmp ( i ) =<a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( dt.get_col ( i ) );}<span class="keywordflow">return</span> tmp;} 
    341 <a name="l00529"></a>00529  
    342 <a name="l00531"></a><a class="code" href="classbdm_1_1BM.html#710e7d69c0d8791fb41a7cd4683cca2c">00531</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#710e7d69c0d8791fb41a7cd4683cca2c" title="Constructs a predictive density (marginal density on data).">predictor</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv )<span class="keyword"> const </span>{it_error ( <span class="stringliteral">"Not implemented"</span> );<span class="keywordflow">return</span> NULL;}; 
    343 <a name="l00532"></a>00532  
    344 <a name="l00534"></a><a class="code" href="classbdm_1_1BM.html#374281cad3caa16fa30609bb4ac16505">00534</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html#374281cad3caa16fa30609bb4ac16505" title="Destructor for future use;.">~BM</a>() {}; 
    345 <a name="l00536"></a><a class="code" href="classbdm_1_1BM.html#40a3c891996391e3135518053a917793">00536</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1BM.html#40a3c891996391e3135518053a917793" title="access function">_rv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> rv;} 
    346 <a name="l00538"></a><a class="code" href="classbdm_1_1BM.html#5be65d37dedfe33a3671e7065f523a70">00538</a>                 <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#5be65d37dedfe33a3671e7065f523a70" title="access function">_ll</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;} 
    347 <a name="l00540"></a><a class="code" href="classbdm_1_1BM.html#236b3abbcc93594fc97cd86d82c1a83f">00540</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#236b3abbcc93594fc97cd86d82c1a83f" title="access function">set_evalll</a> ( <span class="keywordtype">bool</span> evl0 ) {<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>=evl0;} 
    348 <a name="l00541"></a>00541  
    349 <a name="l00544"></a><a class="code" href="classbdm_1_1BM.html#3efb3098172f1f67564a312fe732473e">00544</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of the world, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#3efb3098172f1f67564a312fe732473e">_copy_</a> ( <span class="keywordtype">bool</span> changerv=<span class="keyword">false</span> ) {it_error ( <span class="stringliteral">"function _copy_ not implemented for this BM"</span> ); <span class="keywordflow">return</span> NULL;}; 
    350 <a name="l00545"></a>00545         }; 
    351 <a name="l00546"></a>00546  
    352 <a name="l00556"></a><a class="code" href="classbdm_1_1BMcond.html">00556</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1BMcond.html" title="Conditional Bayesian Filter.">BMcond</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { 
    353 <a name="l00557"></a>00557         <span class="keyword">protected</span>: 
    354 <a name="l00559"></a><a class="code" href="classbdm_1_1BMcond.html#9a12750776d977408aada06a70093297">00559</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BMcond.html#9a12750776d977408aada06a70093297" title="Identificator of the conditioning variable.">rvc</a>; 
    355 <a name="l00560"></a>00560         <span class="keyword">public</span>: 
    356 <a name="l00562"></a>00562                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BMcond.html#a67bac171f89ef18d0191f8f74189f25" title="Substitute val for rvc.">condition</a> ( <span class="keyword">const</span> vec &amp;val ) =0; 
    357 <a name="l00564"></a><a class="code" href="classbdm_1_1BMcond.html#dde99f401cbf2e8e6a926eaa764b457d">00564</a>                 <a class="code" href="classbdm_1_1BMcond.html#dde99f401cbf2e8e6a926eaa764b457d" title="Default constructor.">BMcond</a> ( <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv0 ) :<a class="code" href="classbdm_1_1BMcond.html#9a12750776d977408aada06a70093297" title="Identificator of the conditioning variable.">rvc</a> ( rv0 ) {}; 
    358 <a name="l00566"></a><a class="code" href="classbdm_1_1BMcond.html#7d68d46cfcc36f9cc07a15a5403b5a1a">00566</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BMcond.html#7d68d46cfcc36f9cc07a15a5403b5a1a" title="Destructor for future use.">~BMcond</a>() {}; 
    359 <a name="l00568"></a><a class="code" href="classbdm_1_1BMcond.html#7506910f93250b44fea505ec4ffb19dc">00568</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1BMcond.html#7506910f93250b44fea505ec4ffb19dc" title="access function">_rvc</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BMcond.html#9a12750776d977408aada06a70093297" title="Identificator of the conditioning variable.">rvc</a>;} 
    360 <a name="l00569"></a>00569         }; 
    361 <a name="l00570"></a>00570  
    362 <a name="l00571"></a>00571 }; <span class="comment">//namespace</span> 
    363 <a name="l00573"></a>00573 <span class="comment"></span><span class="preprocessor">#endif // BM_H</span> 
     231<a name="l00353"></a>00353         }; 
     232<a name="l00356"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00356</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a> { 
     233<a name="l00357"></a>00357         <span class="keyword">protected</span>: 
     234<a name="l00359"></a><a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d">00359</a>                 ivec <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a>; 
     235<a name="l00361"></a><a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5">00361</a>                 ivec <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>; 
     236<a name="l00362"></a>00362         <span class="keyword">public</span>: 
     237<a name="l00364"></a><a class="code" href="classbdm_1_1datalink__m2m.html#540c4b60686fdf1a7915300ae11bc41b">00364</a>                 <a class="code" href="classbdm_1_1datalink__m2m.html#540c4b60686fdf1a7915300ae11bc41b" title="Constructor.">datalink_m2m</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc_up ) : 
     238<a name="l00365"></a>00365                                 <a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a> ( rv, rvc, rv_up ) { 
     239<a name="l00366"></a>00366                         <span class="comment">//establish c2c connection</span> 
     240<a name="l00367"></a>00367                         rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a> ); 
     241<a name="l00368"></a>00368                         it_assert_debug ( <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>.length() +<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>.length() ==<a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">"cond is not fully given"</span> ); 
     242<a name="l00369"></a>00369                 } 
     243<a name="l00371"></a><a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90">00371</a>                 vec <a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &amp;quot;Up&amp;quot;.">get_cond</a> ( <span class="keyword">const</span> vec &amp;val_up, <span class="keyword">const</span> vec &amp;cond_up ) { 
     244<a name="l00372"></a>00372                         vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ); 
     245<a name="l00373"></a>00373                         set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>,val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ) ); 
     246<a name="l00374"></a>00374                         set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>,cond_up ( <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a> ) ); 
     247<a name="l00375"></a>00375                         <span class="keywordflow">return</span> tmp; 
     248<a name="l00376"></a>00376                 } 
     249<a name="l00378"></a>00378  
     250<a name="l00379"></a>00379         }; 
     251<a name="l00380"></a>00380  
     252<a name="l00386"></a><a class="code" href="classbdm_1_1logger.html">00386</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { 
     253<a name="l00387"></a>00387                 <span class="keyword">protected</span>: 
     254<a name="l00389"></a><a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f">00389</a>                         Array&lt;RV&gt; <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>; 
     255<a name="l00391"></a><a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02">00391</a>                         Array&lt;string&gt; <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>; 
     256<a name="l00392"></a>00392                 <span class="keyword">public</span>: 
     257<a name="l00394"></a><a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf">00394</a>                         <a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a> ( ) : <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( 0 ),<a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> ( 0 ) {} 
     258<a name="l00395"></a>00395  
     259<a name="l00397"></a><a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1">00397</a>                         <span class="keyword">virtual</span> <span class="keywordtype">int</span> <span class="keyword">add</span> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keywordtype">string</span> name=<span class="stringliteral">""</span> ) { 
     260<a name="l00398"></a>00398                                 <span class="keywordtype">int</span> <span class="keywordtype">id</span>=<a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length(); 
     261<a name="l00399"></a>00399                                 <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>=<a class="code" href="namespacebdm.html#b9016687c0e874ca5cdcf75ae28811aa" title="Concat two random variables.">concat</a> ( <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, name ); <span class="comment">// diff</span> 
     262<a name="l00400"></a>00400                                 <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length ( <span class="keywordtype">id</span>+1,<span class="keyword">true</span> ); 
     263<a name="l00401"></a>00401                                 <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( <span class="keywordtype">id</span> ) = rv; 
     264<a name="l00402"></a>00402                                 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span> 
     265<a name="l00403"></a>00403                         } 
     266<a name="l00404"></a>00404  
     267<a name="l00406"></a>00406                         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &amp;v ) =0; 
     268<a name="l00407"></a>00407  
     269<a name="l00409"></a>00409                         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#4f31c03578a7b9b30d8b1f8c338a37e8" title="Shifts storage position for another time step.">step</a>() =0; 
     270<a name="l00410"></a>00410  
     271<a name="l00412"></a><a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d">00412</a>                         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {}; 
     272<a name="l00413"></a>00413  
     273<a name="l00415"></a><a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc">00415</a>                         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {}; 
     274<a name="l00416"></a>00416  
     275<a name="l00418"></a><a class="code" href="classbdm_1_1logger.html#f2ade56238a5d408e65a77c53f516448">00418</a>                         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1logger.html#f2ade56238a5d408e65a77c53f516448" title="for future use">~logger</a>() {}; 
     276<a name="l00419"></a>00419         }; 
     277<a name="l00420"></a>00420  
     278<a name="l00424"></a><a class="code" href="classbdm_1_1mepdf.html">00424</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> { 
     279<a name="l00425"></a>00425         <span class="keyword">public</span>: 
     280<a name="l00427"></a><a class="code" href="classbdm_1_1mepdf.html#27cc32d1a810516c25bda51ddf886376">00427</a>                 <a class="code" href="classbdm_1_1mepdf.html#27cc32d1a810516c25bda51ddf886376" title="Default constructor.">mepdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* em ) :<a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> ( em-&gt;<a class="code" href="classbdm_1_1mpdf.html#222d5280e309c5a053ba73841e98c151" title="access function">_rv</a>(),<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>() ) {<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>=<span class="keyword">const_cast&lt;</span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>*<span class="keyword">&gt;</span> ( em );}; 
     281<a name="l00428"></a><a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c">00428</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( <span class="keyword">const</span> vec &amp;cond ) {} 
     282<a name="l00429"></a>00429         }; 
     283<a name="l00430"></a>00430  
     284<a name="l00433"></a><a class="code" href="classbdm_1_1compositepdf.html">00433</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1compositepdf.html" title="Abstract composition of pdfs, will be used for specific classes this abstract class...">compositepdf</a> { 
     285<a name="l00434"></a>00434         <span class="keyword">protected</span>: 
     286<a name="l00436"></a><a class="code" href="classbdm_1_1compositepdf.html#7ca3cd8ed92a7154f5b9ff13b1e9d52a">00436</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1compositepdf.html#7ca3cd8ed92a7154f5b9ff13b1e9d52a" title="Number of mpdfs in the composite.">n</a>; 
     287<a name="l00438"></a><a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a">00438</a>                 Array&lt;mpdf*&gt; <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>; 
     288<a name="l00439"></a>00439         <span class="keyword">public</span>: 
     289<a name="l00440"></a>00440                 <a class="code" href="classbdm_1_1compositepdf.html" title="Abstract composition of pdfs, will be used for specific classes this abstract class...">compositepdf</a> ( Array&lt;mpdf*&gt; A0 ) : <a class="code" href="classbdm_1_1compositepdf.html#7ca3cd8ed92a7154f5b9ff13b1e9d52a" title="Number of mpdfs in the composite.">n</a> ( A0.length() ), <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a> ( A0 ) {}; 
     290<a name="l00442"></a>00442                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1compositepdf.html#c73d39acc4378eee6a63155c3517d3c9" title="find common rv, flag">getrv</a> ( <span class="keywordtype">bool</span> checkoverlap=<span class="keyword">false</span> ); 
     291<a name="l00444"></a>00444                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1compositepdf.html#c71fc2c51f49d797e61f479f543c75ce" title="common rvc of all mpdfs is written to rvc">setrvc</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc ); 
     292<a name="l00445"></a>00445         }; 
     293<a name="l00446"></a>00446  
     294<a name="l00454"></a><a class="code" href="classbdm_1_1DS.html">00454</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { 
     295<a name="l00455"></a>00455         <span class="keyword">protected</span>: 
     296<a name="l00457"></a><a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec">00457</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a>; 
     297<a name="l00459"></a><a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702">00459</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Action variables, accepted by write().">Urv</a>; <span class="comment">//</span> 
     298<a name="l00461"></a><a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867">00461</a> <span class="comment"></span>                <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut; 
     299<a name="l00462"></a>00462         <span class="keyword">public</span>: 
     300<a name="l00463"></a>00463                 <a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a>() :<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a> ( <a class="code" href="namespacebdm.html#bdd4760f14ec7d6fea083aa2170f6236" title="Default empty RV that can be used as default argument.">RV0</a> ),<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Action variables, accepted by write().">Urv</a> ( <a class="code" href="namespacebdm.html#bdd4760f14ec7d6fea083aa2170f6236" title="Default empty RV that can be used as default argument.">RV0</a> ) {}; 
     301<a name="l00464"></a>00464                 <a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;Drv0, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;Urv0 ) :<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a> ( Drv0 ),<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Action variables, accepted by write().">Urv</a> ( Urv0 ) {}; 
     302<a name="l00466"></a><a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba">00466</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; 
     303<a name="l00468"></a><a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832">00468</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt, <span class="keyword">const</span> ivec &amp;indeces ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; 
     304<a name="l00470"></a><a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a">00470</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> ( vec &amp;ut ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; 
     305<a name="l00472"></a><a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d">00472</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> ( vec &amp;ut, <span class="keyword">const</span> ivec &amp;indeces ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; 
     306<a name="l00473"></a>00473  
     307<a name="l00475"></a>00475                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#9a14c64d881e838ddc3a5617ee8a973b" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>() =0; 
     308<a name="l00476"></a>00476  
     309<a name="l00478"></a><a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e">00478</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) { 
     310<a name="l00479"></a>00479                         <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>=L.<a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1" title="returns an identifier which will be later needed for calling the log() function">add</a> ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a>,<span class="stringliteral">""</span> ); 
     311<a name="l00480"></a>00480                         L_ut=L.<a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1" title="returns an identifier which will be later needed for calling the log() function">add</a> ( <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Action variables, accepted by write().">Urv</a>,<span class="stringliteral">""</span> ); 
     312<a name="l00481"></a>00481                 } 
     313<a name="l00483"></a><a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf">00483</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) { 
     314<a name="l00484"></a>00484                         vec tmp(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>()+<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Action variables, accepted by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>()); 
     315<a name="l00485"></a>00485                         <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a>(tmp); 
     316<a name="l00486"></a>00486                         <span class="comment">// d is first in getdata</span> 
     317<a name="l00487"></a>00487                         L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>,tmp.left ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>() ) ); 
     318<a name="l00488"></a>00488                         <span class="comment">// u follows after d in getdata</span> 
     319<a name="l00489"></a>00489                         L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( L_ut,tmp.mid ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>(), <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Action variables, accepted by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#2174751a00ce19f941edd2c1a861be67" title="Return number of scalars in the RV.">count</a>() ) ); 
     320<a name="l00490"></a>00490                 } 
     321<a name="l00492"></a><a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660">00492</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660" title="access function">_drv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="namespacebdm.html#b9016687c0e874ca5cdcf75ae28811aa" title="Concat two random variables.">concat</a>(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Observed variables, returned by getdata().">Drv</a>,<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Action variables, accepted by write().">Urv</a>);} 
     322<a name="l00494"></a><a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33">00494</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Action variables, accepted by write().">Urv</a>;} 
     323<a name="l00495"></a>00495         }; 
     324<a name="l00496"></a>00496  
     325<a name="l00501"></a><a class="code" href="classbdm_1_1BM.html">00501</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { 
     326<a name="l00502"></a>00502         <span class="keyword">protected</span>: 
     327<a name="l00504"></a><a class="code" href="classbdm_1_1BM.html#18d6db4af8ee42077741d9e3618153ca">00504</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#18d6db4af8ee42077741d9e3618153ca" title="Random variable of the posterior.">rv</a>; 
     328<a name="l00506"></a><a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed">00506</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; 
     329<a name="l00508"></a><a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a">00508</a>                 <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; 
     330<a name="l00510"></a><a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee">00510</a>                 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>; 
     331<a name="l00511"></a>00511         <span class="keyword">public</span>: 
     332<a name="l00512"></a>00512  
     333<a name="l00514"></a><a class="code" href="classbdm_1_1BM.html#a33000bb124c32e58742f056ecab4293">00514</a>                 <a class="code" href="classbdm_1_1BM.html#a33000bb124c32e58742f056ecab4293" title="Default constructor.">BM</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv0, <span class="keywordtype">double</span> ll0=0,<span class="keywordtype">bool</span> evalll0=<span class="keyword">true</span> ) :<a class="code" href="classbdm_1_1BM.html#18d6db4af8ee42077741d9e3618153ca" title="Random variable of the posterior.">rv</a> ( rv0 ), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( ll0 ),<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( evalll0 ) {<span class="comment">//Fixme: test rv</span> 
     334<a name="l00515"></a>00515                 }; 
     335<a name="l00517"></a><a class="code" href="classbdm_1_1BM.html#241b3701190ff1f729fe873a2eef0055">00517</a>                 <a class="code" href="classbdm_1_1BM.html#a33000bb124c32e58742f056ecab4293" title="Default constructor.">BM</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &amp;B ) : <a class="code" href="classbdm_1_1BM.html#18d6db4af8ee42077741d9e3618153ca" title="Random variable of the posterior.">rv</a> ( B.<a class="code" href="classbdm_1_1BM.html#18d6db4af8ee42077741d9e3618153ca" title="Random variable of the posterior.">rv</a> ), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( B.<a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ), <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( B.<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ) {} 
     336<a name="l00518"></a>00518  
     337<a name="l00522"></a>00522                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> ( <span class="keyword">const</span> vec &amp;dt ) = 0; 
     338<a name="l00524"></a>00524                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> ( <span class="keyword">const</span> mat &amp;Dt ); 
     339<a name="l00526"></a>00526                 <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>&amp; <a class="code" href="classbdm_1_1BM.html#963258c4c2dd05be001003b19aceefef" title="Returns a reference to the epdf representing posterior density on parameters.">_epdf</a>() <span class="keyword">const</span> =0; 
     340<a name="l00527"></a>00527  
     341<a name="l00529"></a>00529                 <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#4ed0f8b880e606316ae800f3a011c3a6" title="Returns a pointer to the epdf representing posterior density on parameters. Use with...">_e</a>() <span class="keyword">const</span> =0; 
     342<a name="l00530"></a>00530  
     343<a name="l00533"></a><a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">00533</a>                 <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( <span class="keyword">const</span> vec &amp;dt )<span class="keyword"> const</span>{it_error ( <span class="stringliteral">"Not implemented"</span> );<span class="keywordflow">return</span> 0.0;} 
     344<a name="l00535"></a><a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae">00535</a>                 vec <a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> ( <span class="keyword">const</span> mat &amp;dt )<span class="keyword"> const</span>{vec tmp ( dt.cols() );<span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i=0;i&lt;dt.cols();i++ ) {tmp ( i ) =<a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( dt.get_col ( i ) );}<span class="keywordflow">return</span> tmp;} 
     345<a name="l00536"></a>00536  
     346<a name="l00538"></a><a class="code" href="classbdm_1_1BM.html#710e7d69c0d8791fb41a7cd4683cca2c">00538</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#710e7d69c0d8791fb41a7cd4683cca2c" title="Constructs a predictive density (marginal density on data).">predictor</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1BM.html#18d6db4af8ee42077741d9e3618153ca" title="Random variable of the posterior.">rv</a> )<span class="keyword"> const </span>{it_error ( <span class="stringliteral">"Not implemented"</span> );<span class="keywordflow">return</span> NULL;}; 
     347<a name="l00539"></a>00539  
     348<a name="l00541"></a><a class="code" href="classbdm_1_1BM.html#374281cad3caa16fa30609bb4ac16505">00541</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html#374281cad3caa16fa30609bb4ac16505" title="Destructor for future use;.">~BM</a>() {}; 
     349<a name="l00543"></a><a class="code" href="classbdm_1_1BM.html#40a3c891996391e3135518053a917793">00543</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1BM.html#40a3c891996391e3135518053a917793" title="access function">_rv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#18d6db4af8ee42077741d9e3618153ca" title="Random variable of the posterior.">rv</a>;} 
     350<a name="l00545"></a><a class="code" href="classbdm_1_1BM.html#ff2d8755ba0b3def927d31305c03b09c">00545</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1BM.html#ff2d8755ba0b3def927d31305c03b09c" title="access function">_drv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;} 
     351<a name="l00547"></a><a class="code" href="classbdm_1_1BM.html#f135ae6dce7e9f30c9f88229c7930b96">00547</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#f135ae6dce7e9f30c9f88229c7930b96" title="set drv">set_drv</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1BM.html#18d6db4af8ee42077741d9e3618153ca" title="Random variable of the posterior.">rv</a>){<a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>=rv;} 
     352<a name="l00549"></a><a class="code" href="classbdm_1_1BM.html#5be65d37dedfe33a3671e7065f523a70">00549</a>                 <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#5be65d37dedfe33a3671e7065f523a70" title="access function">_ll</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;} 
     353<a name="l00551"></a><a class="code" href="classbdm_1_1BM.html#236b3abbcc93594fc97cd86d82c1a83f">00551</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#236b3abbcc93594fc97cd86d82c1a83f" title="access function">set_evalll</a> ( <span class="keywordtype">bool</span> evl0 ) {<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>=evl0;} 
     354<a name="l00552"></a>00552  
     355<a name="l00555"></a><a class="code" href="classbdm_1_1BM.html#3efb3098172f1f67564a312fe732473e">00555</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#3efb3098172f1f67564a312fe732473e">_copy_</a> ( <span class="keywordtype">bool</span> changerv=<span class="keyword">false</span> ) {it_error ( <span class="stringliteral">"function _copy_ not implemented for this BM"</span> ); <span class="keywordflow">return</span> NULL;}; 
     356<a name="l00556"></a>00556         }; 
     357<a name="l00557"></a>00557  
     358<a name="l00567"></a><a class="code" href="classbdm_1_1BMcond.html">00567</a>         <span class="keyword">class </span><a class="code" href="classbdm_1_1BMcond.html" title="Conditional Bayesian Filter.">BMcond</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { 
     359<a name="l00568"></a>00568         <span class="keyword">protected</span>: 
     360<a name="l00570"></a><a class="code" href="classbdm_1_1BMcond.html#9a12750776d977408aada06a70093297">00570</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BMcond.html#9a12750776d977408aada06a70093297" title="Identificator of the conditioning variable.">rvc</a>; 
     361<a name="l00571"></a>00571         <span class="keyword">public</span>: 
     362<a name="l00573"></a>00573                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BMcond.html#a67bac171f89ef18d0191f8f74189f25" title="Substitute val for rvc.">condition</a> ( <span class="keyword">const</span> vec &amp;val ) =0; 
     363<a name="l00575"></a><a class="code" href="classbdm_1_1BMcond.html#dde99f401cbf2e8e6a926eaa764b457d">00575</a>                 <a class="code" href="classbdm_1_1BMcond.html#dde99f401cbf2e8e6a926eaa764b457d" title="Default constructor.">BMcond</a> ( <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv0 ) :<a class="code" href="classbdm_1_1BMcond.html#9a12750776d977408aada06a70093297" title="Identificator of the conditioning variable.">rvc</a> ( rv0 ) {}; 
     364<a name="l00577"></a><a class="code" href="classbdm_1_1BMcond.html#7d68d46cfcc36f9cc07a15a5403b5a1a">00577</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BMcond.html#7d68d46cfcc36f9cc07a15a5403b5a1a" title="Destructor for future use.">~BMcond</a>() {}; 
     365<a name="l00579"></a><a class="code" href="classbdm_1_1BMcond.html#7506910f93250b44fea505ec4ffb19dc">00579</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1BMcond.html#7506910f93250b44fea505ec4ffb19dc" title="access function">_rvc</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BMcond.html#9a12750776d977408aada06a70093297" title="Identificator of the conditioning variable.">rvc</a>;} 
     366<a name="l00580"></a>00580         }; 
     367<a name="l00581"></a>00581  
     368<a name="l00582"></a>00582 }; <span class="comment">//namespace</span> 
     369<a name="l00584"></a>00584 <span class="comment"></span><span class="preprocessor">#endif // BM_H</span> 
    364370</pre></div></div> 
    365 <hr size="1"><address style="text-align: right;"><small>Generated on Fri Feb 6 19:49:45 2009 for mixpp by&nbsp; 
     371<hr size="1"><address style="text-align: right;"><small>Generated on Wed Feb 11 10:20:05 2009 for mixpp by&nbsp; 
    366372<a href="http://www.doxygen.org/index.html"> 
    367373<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.5.6 </small></address>