269 | | <a name="l00404"></a><a class="code" href="classbdm_1_1datalink.html#5b5368c3899eed2f670d09142c2548e5">00404</a> vec <a class="code" href="classbdm_1_1datalink.html#5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &quot;Up&quot;.">pushdown</a> ( <span class="keyword">const</span> vec &val_up ) { |
270 | | <a name="l00405"></a>00405 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); |
271 | | <a name="l00406"></a>00406 <span class="keywordflow">return</span> get_vec ( val_up,<a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a> ); |
272 | | <a name="l00407"></a>00407 } |
273 | | <a name="l00409"></a><a class="code" href="classbdm_1_1datalink.html#610e966f2edb1fcd6a5b28267c571793">00409</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#610e966f2edb1fcd6a5b28267c571793" title="Fill val of &quot;Up&quot; by my pieces.">pushup</a> ( vec &val_up, <span class="keyword">const</span> vec &val ) { |
274 | | <a name="l00410"></a>00410 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>==val.length(),<span class="stringliteral">"Wrong val"</span> ); |
275 | | <a name="l00411"></a>00411 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); |
276 | | <a name="l00412"></a>00412 set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>, val ); |
277 | | <a name="l00413"></a>00413 } |
278 | | <a name="l00414"></a>00414 }; |
279 | | <a name="l00415"></a>00415 |
280 | | <a name="l00417"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00417</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> { |
281 | | <a name="l00418"></a>00418 <span class="keyword">protected</span>: |
282 | | <a name="l00420"></a><a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9">00420</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>; |
283 | | <a name="l00422"></a><a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783">00422</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>; |
284 | | <a name="l00424"></a><a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc">00424</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>; |
285 | | <a name="l00425"></a>00425 |
286 | | <a name="l00426"></a>00426 <span class="keyword">public</span>: |
287 | | <a name="l00428"></a><a class="code" href="classbdm_1_1datalink__m2e.html#31bb5b6cd04b4d99a02fc8d1ad5ce202">00428</a> <a class="code" href="classbdm_1_1datalink__m2e.html#31bb5b6cd04b4d99a02fc8d1ad5ce202" title="Constructor.">datalink_m2e</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up ) : |
288 | | <a name="l00429"></a>00429 <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> ( rv,rv_up ), <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ( rvc._dsize() ) { |
289 | | <a name="l00430"></a>00430 <span class="comment">//establish v2c connection</span> |
290 | | <a name="l00431"></a>00431 rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rv_up, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ); |
291 | | <a name="l00432"></a>00432 } |
292 | | <a name="l00434"></a><a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703">00434</a> vec <a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> ( <span class="keyword">const</span> vec &val_up ) { |
293 | | <a name="l00435"></a>00435 vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ); |
294 | | <a name="l00436"></a>00436 set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>,val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ) ); |
295 | | <a name="l00437"></a>00437 <span class="keywordflow">return</span> tmp; |
296 | | <a name="l00438"></a>00438 } |
297 | | <a name="l00439"></a>00439 <span class="keywordtype">void</span> pushup_cond ( vec &val_up, <span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond ) { |
298 | | <a name="l00440"></a>00440 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>==val.length(),<span class="stringliteral">"Wrong val"</span> ); |
299 | | <a name="l00441"></a>00441 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); |
300 | | <a name="l00442"></a>00442 set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>, val ); |
301 | | <a name="l00443"></a>00443 set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>, cond ); |
302 | | <a name="l00444"></a>00444 } |
303 | | <a name="l00445"></a>00445 }; |
304 | | <a name="l00448"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00448</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a> { |
305 | | <a name="l00449"></a>00449 <span class="keyword">protected</span>: |
306 | | <a name="l00451"></a><a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d">00451</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a>; |
307 | | <a name="l00453"></a><a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5">00453</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>; |
308 | | <a name="l00454"></a>00454 <span class="keyword">public</span>: |
309 | | <a name="l00456"></a><a class="code" href="classbdm_1_1datalink__m2m.html#540c4b60686fdf1a7915300ae11bc41b">00456</a> <a class="code" href="classbdm_1_1datalink__m2m.html#540c4b60686fdf1a7915300ae11bc41b" title="Constructor.">datalink_m2m</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc_up ) : |
310 | | <a name="l00457"></a>00457 <a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a> ( rv, rvc, rv_up ) { |
311 | | <a name="l00458"></a>00458 <span class="comment">//establish c2c connection</span> |
312 | | <a name="l00459"></a>00459 rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a> ); |
313 | | <a name="l00460"></a>00460 it_assert_debug ( <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>.length() +<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>.length() ==<a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">"cond is not fully given"</span> ); |
314 | | <a name="l00461"></a>00461 } |
315 | | <a name="l00463"></a><a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90">00463</a> vec <a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &quot;Up&quot;.">get_cond</a> ( <span class="keyword">const</span> vec &val_up, <span class="keyword">const</span> vec &cond_up ) { |
316 | | <a name="l00464"></a>00464 vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ); |
317 | | <a name="l00465"></a>00465 set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>,val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ) ); |
318 | | <a name="l00466"></a>00466 set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>,cond_up ( <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a> ) ); |
319 | | <a name="l00467"></a>00467 <span class="keywordflow">return</span> tmp; |
320 | | <a name="l00468"></a>00468 } |
321 | | <a name="l00470"></a>00470 |
322 | | <a name="l00471"></a>00471 }; |
323 | | <a name="l00472"></a>00472 |
324 | | <a name="l00478"></a><a class="code" href="classbdm_1_1logger.html">00478</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { |
325 | | <a name="l00479"></a>00479 <span class="keyword">protected</span>: |
326 | | <a name="l00481"></a><a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f">00481</a> Array<RV> <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>; |
327 | | <a name="l00483"></a><a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02">00483</a> Array<string> <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>; |
328 | | <a name="l00484"></a>00484 <span class="keyword">public</span>: |
329 | | <a name="l00486"></a><a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf">00486</a> <a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a> ( ) : <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( 0 ),<a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> ( 0 ) {} |
330 | | <a name="l00487"></a>00487 |
331 | | <a name="l00490"></a><a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1">00490</a> <span class="keyword">virtual</span> <span class="keywordtype">int</span> <span class="keyword">add</span> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keywordtype">string</span> name=<span class="stringliteral">""</span> ) { |
332 | | <a name="l00491"></a>00491 <span class="keywordtype">int</span> id; |
333 | | <a name="l00492"></a>00492 <span class="keywordflow">if</span> ( rv._dsize() >0 ) { |
334 | | <a name="l00493"></a>00493 <span class="keywordtype">id</span>=<a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length(); |
335 | | <a name="l00494"></a>00494 <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>=concat ( <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, name ); <span class="comment">// diff</span> |
336 | | <a name="l00495"></a>00495 <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length ( <span class="keywordtype">id</span>+1,<span class="keyword">true</span> ); |
337 | | <a name="l00496"></a>00496 <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( <span class="keywordtype">id</span> ) = rv; |
338 | | <a name="l00497"></a>00497 } |
339 | | <a name="l00498"></a>00498 <span class="keywordflow">else</span> { <span class="keywordtype">id</span> =-1;} |
340 | | <a name="l00499"></a>00499 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span> |
341 | | <a name="l00500"></a>00500 } |
342 | | <a name="l00501"></a>00501 |
343 | | <a name="l00503"></a>00503 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &v ) =0; |
344 | | <a name="l00504"></a>00504 |
345 | | <a name="l00506"></a>00506 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#4f31c03578a7b9b30d8b1f8c338a37e8" title="Shifts storage position for another time step.">step</a>() =0; |
346 | | <a name="l00507"></a>00507 |
347 | | <a name="l00509"></a><a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d">00509</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {}; |
348 | | <a name="l00510"></a>00510 |
349 | | <a name="l00512"></a><a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc">00512</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {}; |
350 | | <a name="l00513"></a>00513 |
351 | | <a name="l00514"></a>00514 }; |
| 275 | <a name="l00404"></a><a class="code" href="classbdm_1_1datalink.html#724486a37002e7a3a73366c3af9b82ad">00404</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#724486a37002e7a3a73366c3af9b82ad" title="set connection using indeces">set_connection</a> ( <span class="keywordtype">int</span> ds, <span class="keywordtype">int</span> us, <span class="keyword">const</span> ivec &upind ) { |
| 276 | <a name="l00405"></a>00405 <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = ds; |
| 277 | <a name="l00406"></a>00406 <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> = us; |
| 278 | <a name="l00407"></a>00407 <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>= upind; |
| 279 | <a name="l00408"></a>00408 |
| 280 | <a name="l00409"></a>00409 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>.length() ==<a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>,<span class="stringliteral">"rv is not fully in rv_up"</span> ); |
| 281 | <a name="l00410"></a>00410 } |
| 282 | <a name="l00412"></a><a class="code" href="classbdm_1_1datalink.html#5b5368c3899eed2f670d09142c2548e5">00412</a> vec <a class="code" href="classbdm_1_1datalink.html#5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &quot;Up&quot;.">pushdown</a> ( <span class="keyword">const</span> vec &val_up ) { |
| 283 | <a name="l00413"></a>00413 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); |
| 284 | <a name="l00414"></a>00414 <span class="keywordflow">return</span> get_vec ( val_up,<a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a> ); |
| 285 | <a name="l00415"></a>00415 } |
| 286 | <a name="l00417"></a><a class="code" href="classbdm_1_1datalink.html#610e966f2edb1fcd6a5b28267c571793">00417</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#610e966f2edb1fcd6a5b28267c571793" title="Fill val of &quot;Up&quot; by my pieces.">pushup</a> ( vec &val_up, <span class="keyword">const</span> vec &val ) { |
| 287 | <a name="l00418"></a>00418 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>==val.length(),<span class="stringliteral">"Wrong val"</span> ); |
| 288 | <a name="l00419"></a>00419 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); |
| 289 | <a name="l00420"></a>00420 set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>, val ); |
| 290 | <a name="l00421"></a>00421 } |
| 291 | <a name="l00422"></a>00422 }; |
| 292 | <a name="l00423"></a>00423 |
| 293 | <a name="l00425"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00425</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> { |
| 294 | <a name="l00426"></a>00426 <span class="keyword">protected</span>: |
| 295 | <a name="l00428"></a><a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9">00428</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>; |
| 296 | <a name="l00430"></a><a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783">00430</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>; |
| 297 | <a name="l00432"></a><a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc">00432</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>; |
| 298 | <a name="l00433"></a>00433 |
| 299 | <a name="l00434"></a>00434 <span class="keyword">public</span>: |
| 300 | <a name="l00435"></a>00435 <a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a>() {}; |
| 301 | <a name="l00437"></a><a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0">00437</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0" title="Constructor.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up ) { |
| 302 | <a name="l00438"></a>00438 <a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0" title="Constructor.">datalink::set_connection</a> ( rv,rv_up ); |
| 303 | <a name="l00439"></a>00439 <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>= rvc.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(); |
| 304 | <a name="l00440"></a>00440 <span class="comment">//establish v2c connection</span> |
| 305 | <a name="l00441"></a>00441 rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rv_up, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ); |
| 306 | <a name="l00442"></a>00442 } |
| 307 | <a name="l00444"></a><a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703">00444</a> vec <a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> ( <span class="keyword">const</span> vec &val_up ) { |
| 308 | <a name="l00445"></a>00445 vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ); |
| 309 | <a name="l00446"></a>00446 set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>,val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ) ); |
| 310 | <a name="l00447"></a>00447 <span class="keywordflow">return</span> tmp; |
| 311 | <a name="l00448"></a>00448 } |
| 312 | <a name="l00449"></a>00449 <span class="keywordtype">void</span> pushup_cond ( vec &val_up, <span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond ) { |
| 313 | <a name="l00450"></a>00450 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>==val.length(),<span class="stringliteral">"Wrong val"</span> ); |
| 314 | <a name="l00451"></a>00451 it_assert_debug ( <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>==val_up.length(),<span class="stringliteral">"Wrong val_up"</span> ); |
| 315 | <a name="l00452"></a>00452 set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>, val ); |
| 316 | <a name="l00453"></a>00453 set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>, cond ); |
| 317 | <a name="l00454"></a>00454 } |
| 318 | <a name="l00455"></a>00455 }; |
| 319 | <a name="l00458"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00458</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a> { |
| 320 | <a name="l00459"></a>00459 <span class="keyword">protected</span>: |
| 321 | <a name="l00461"></a><a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d">00461</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a>; |
| 322 | <a name="l00463"></a><a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5">00463</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>; |
| 323 | <a name="l00464"></a>00464 <span class="keyword">public</span>: |
| 324 | <a name="l00466"></a><a class="code" href="classbdm_1_1datalink__m2m.html#3baed32cb66f0e2f731032cec0a4d287">00466</a> <a class="code" href="classbdm_1_1datalink__m2m.html#3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {}; |
| 325 | <a name="l00467"></a>00467 <span class="keywordtype">void</span> set_connection ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc_up ) { |
| 326 | <a name="l00468"></a>00468 <a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0" title="Constructor.">datalink_m2e::set_connection</a> ( rv, rvc, rv_up ); |
| 327 | <a name="l00469"></a>00469 <span class="comment">//establish c2c connection</span> |
| 328 | <a name="l00470"></a>00470 rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a> ); |
| 329 | <a name="l00471"></a>00471 it_assert_debug ( <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>.length() +<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>.length() ==<a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">"cond is not fully given"</span> ); |
| 330 | <a name="l00472"></a>00472 } |
| 331 | <a name="l00474"></a><a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90">00474</a> vec <a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &quot;Up&quot;.">get_cond</a> ( <span class="keyword">const</span> vec &val_up, <span class="keyword">const</span> vec &cond_up ) { |
| 332 | <a name="l00475"></a>00475 vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ); |
| 333 | <a name="l00476"></a>00476 set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>,val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a> ) ); |
| 334 | <a name="l00477"></a>00477 set_subvector ( tmp,<a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>,cond_up ( <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a> ) ); |
| 335 | <a name="l00478"></a>00478 <span class="keywordflow">return</span> tmp; |
| 336 | <a name="l00479"></a>00479 } |
| 337 | <a name="l00481"></a>00481 |
| 338 | <a name="l00482"></a>00482 }; |
| 339 | <a name="l00483"></a>00483 |
| 340 | <a name="l00489"></a><a class="code" href="classbdm_1_1logger.html">00489</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { |
| 341 | <a name="l00490"></a>00490 <span class="keyword">protected</span>: |
| 342 | <a name="l00492"></a><a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f">00492</a> Array<RV> <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>; |
| 343 | <a name="l00494"></a><a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02">00494</a> Array<string> <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>; |
| 344 | <a name="l00495"></a>00495 <span class="keyword">public</span>: |
| 345 | <a name="l00497"></a><a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf">00497</a> <a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a> ( ) : <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( 0 ),<a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> ( 0 ) {} |
| 346 | <a name="l00498"></a>00498 |
| 347 | <a name="l00501"></a><a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1">00501</a> <span class="keyword">virtual</span> <span class="keywordtype">int</span> <span class="keyword">add</span> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keywordtype">string</span> name=<span class="stringliteral">""</span> ) { |
| 348 | <a name="l00502"></a>00502 <span class="keywordtype">int</span> id; |
| 349 | <a name="l00503"></a>00503 <span class="keywordflow">if</span> ( rv.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() >0 ) { |
| 350 | <a name="l00504"></a>00504 <span class="keywordtype">id</span>=<a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length(); |
| 351 | <a name="l00505"></a>00505 <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>=concat ( <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, name ); <span class="comment">// diff</span> |
| 352 | <a name="l00506"></a>00506 <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length ( <span class="keywordtype">id</span>+1,<span class="keyword">true</span> ); |
| 353 | <a name="l00507"></a>00507 <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( <span class="keywordtype">id</span> ) = rv; |
| 354 | <a name="l00508"></a>00508 } |
| 355 | <a name="l00509"></a>00509 <span class="keywordflow">else</span> { <span class="keywordtype">id</span> =-1;} |
| 356 | <a name="l00510"></a>00510 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span> |
| 357 | <a name="l00511"></a>00511 } |
| 358 | <a name="l00512"></a>00512 |
| 359 | <a name="l00514"></a>00514 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &v ) =0; |
353 | | <a name="l00519"></a><a class="code" href="classbdm_1_1mepdf.html">00519</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> { |
354 | | <a name="l00520"></a>00520 <span class="keyword">public</span>: |
355 | | <a name="l00522"></a><a class="code" href="classbdm_1_1mepdf.html#27cc32d1a810516c25bda51ddf886376">00522</a> <a class="code" href="classbdm_1_1mepdf.html#27cc32d1a810516c25bda51ddf886376" title="Default constructor.">mepdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* em ) :<a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> ( ) {<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>=<span class="keyword">const_cast<</span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>*<span class="keyword">></span> ( em );}; |
356 | | <a name="l00523"></a><a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c">00523</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( <span class="keyword">const</span> vec &cond ) {} |
357 | | <a name="l00524"></a>00524 }; |
358 | | <a name="l00525"></a>00525 |
359 | | <a name="l00528"></a><a class="code" href="classbdm_1_1compositepdf.html">00528</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1compositepdf.html" title="Abstract composition of pdfs, will be used for specific classes this abstract class...">compositepdf</a> { |
360 | | <a name="l00529"></a>00529 <span class="keyword">protected</span>: |
361 | | <a name="l00531"></a><a class="code" href="classbdm_1_1compositepdf.html#7ca3cd8ed92a7154f5b9ff13b1e9d52a">00531</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1compositepdf.html#7ca3cd8ed92a7154f5b9ff13b1e9d52a" title="Number of mpdfs in the composite.">n</a>; |
362 | | <a name="l00533"></a><a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a">00533</a> Array<mpdf*> <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>; |
363 | | <a name="l00534"></a>00534 <span class="keyword">public</span>: |
364 | | <a name="l00535"></a>00535 <a class="code" href="classbdm_1_1compositepdf.html" title="Abstract composition of pdfs, will be used for specific classes this abstract class...">compositepdf</a> ( Array<mpdf*> A0 ) : <a class="code" href="classbdm_1_1compositepdf.html#7ca3cd8ed92a7154f5b9ff13b1e9d52a" title="Number of mpdfs in the composite.">n</a> ( A0.length() ), <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a> ( A0 ) {}; |
365 | | <a name="l00537"></a>00537 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1compositepdf.html#c73d39acc4378eee6a63155c3517d3c9" title="find common rv, flag">getrv</a> ( <span class="keywordtype">bool</span> checkoverlap=<span class="keyword">false</span> ); |
366 | | <a name="l00539"></a>00539 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1compositepdf.html#c71fc2c51f49d797e61f479f543c75ce" title="common rvc of all mpdfs is written to rvc">setrvc</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc ); |
367 | | <a name="l00540"></a>00540 }; |
368 | | <a name="l00541"></a>00541 |
369 | | <a name="l00549"></a><a class="code" href="classbdm_1_1DS.html">00549</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { |
370 | | <a name="l00550"></a>00550 <span class="keyword">protected</span>: |
371 | | <a name="l00551"></a>00551 <span class="keywordtype">int</span> dtsize; |
372 | | <a name="l00552"></a>00552 <span class="keywordtype">int</span> utsize; |
373 | | <a name="l00554"></a><a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec">00554</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>; |
374 | | <a name="l00556"></a><a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702">00556</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span> |
375 | | <a name="l00558"></a><a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867">00558</a> <span class="comment"></span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut; |
376 | | <a name="l00559"></a>00559 <span class="keyword">public</span>: |
377 | | <a name="l00561"></a><a class="code" href="classbdm_1_1DS.html#bedd82e08ae6686b4b1732a122c2201a">00561</a> <a class="code" href="classbdm_1_1DS.html#bedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() :<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> ( ),<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> ( ) {}; |
378 | | <a name="l00563"></a><a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba">00563</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &dt ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; |
379 | | <a name="l00565"></a><a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832">00565</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &dt, <span class="keyword">const</span> ivec &indeces ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; |
380 | | <a name="l00567"></a><a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a">00567</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> ( vec &ut ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; |
381 | | <a name="l00569"></a><a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d">00569</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> ( vec &ut, <span class="keyword">const</span> ivec &indeces ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; |
382 | | <a name="l00570"></a>00570 |
383 | | <a name="l00572"></a>00572 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#9a14c64d881e838ddc3a5617ee8a973b" title="Moves from to , i.e. perfroms the actions and reads response of the system.">step</a>() =0; |
384 | | <a name="l00573"></a>00573 |
385 | | <a name="l00575"></a><a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e">00575</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L ) { |
386 | | <a name="l00576"></a>00576 it_assert_debug ( dtsize==<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(),<span class="stringliteral">""</span> ); |
387 | | <a name="l00577"></a>00577 it_assert_debug ( utsize==<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(),<span class="stringliteral">""</span> ); |
388 | | <a name="l00578"></a>00578 |
389 | | <a name="l00579"></a>00579 <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>=L.<a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1">add</a> ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>,<span class="stringliteral">""</span> ); |
390 | | <a name="l00580"></a>00580 L_ut=L.<a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1">add</a> ( <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>,<span class="stringliteral">""</span> ); |
391 | | <a name="l00581"></a>00581 } |
392 | | <a name="l00583"></a><a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf">00583</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L ) { |
393 | | <a name="l00584"></a>00584 vec tmp ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() +<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() ); |
394 | | <a name="l00585"></a>00585 <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( tmp ); |
395 | | <a name="l00586"></a>00586 <span class="comment">// d is first in getdata</span> |
396 | | <a name="l00587"></a>00587 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>,tmp.left ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() ) ); |
397 | | <a name="l00588"></a>00588 <span class="comment">// u follows after d in getdata</span> |
398 | | <a name="l00589"></a>00589 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( L_ut,tmp.mid ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(), <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() ) ); |
399 | | <a name="l00590"></a>00590 } |
400 | | <a name="l00592"></a><a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660">00592</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660" title="access function">_drv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> concat ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>,<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> );} |
401 | | <a name="l00594"></a><a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33">00594</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>;} |
402 | | <a name="l00595"></a>00595 }; |
403 | | <a name="l00596"></a>00596 |
404 | | <a name="l00618"></a><a class="code" href="classbdm_1_1BM.html">00618</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { |
405 | | <a name="l00619"></a>00619 <span class="keyword">protected</span>: |
406 | | <a name="l00621"></a><a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed">00621</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; |
407 | | <a name="l00623"></a><a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a">00623</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; |
408 | | <a name="l00625"></a><a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee">00625</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>; |
409 | | <a name="l00626"></a>00626 <span class="keyword">public</span>: |
410 | | <a name="l00629"></a>00629 |
411 | | <a name="l00630"></a>00630 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> () :<a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( 0 ),<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( true ), <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a> ( 3 ), <a class="code" href="classbdm_1_1BM.html#a5e0000d2c9df99b029eceff222f7d77" title="Option for logging bounds.">opt_L_bounds</a> ( false ) {}; |
412 | | <a name="l00631"></a>00631 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &B ) : <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ( B.<a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( B.<a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ), <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( B.<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ) {} |
413 | | <a name="l00634"></a><a class="code" href="classbdm_1_1BM.html#40f01563651c1e4fe926189e41a6b8ab">00634</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#40f01563651c1e4fe926189e41a6b8ab">_copy_</a> ()<span class="keyword"> const </span>{<span class="keywordflow">return</span> NULL;}; |
414 | | <a name="l00636"></a>00636 |
415 | | <a name="l00639"></a>00639 |
416 | | <a name="l00643"></a>00643 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> ( <span class="keyword">const</span> vec &dt ) = 0; |
417 | | <a name="l00645"></a>00645 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> ( <span class="keyword">const</span> mat &Dt ); |
418 | | <a name="l00648"></a><a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">00648</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( <span class="keyword">const</span> vec &dt )<span class="keyword"> const</span>{it_error ( <span class="stringliteral">"Not implemented"</span> );<span class="keywordflow">return</span> 0.0;} |
419 | | <a name="l00650"></a><a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae">00650</a> vec <a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> ( <span class="keyword">const</span> mat &dt )<span class="keyword"> const</span>{vec tmp ( dt.cols() );<span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i=0;i<dt.cols();i++ ) {tmp ( i ) =<a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( dt.get_col ( i ) );}<span class="keywordflow">return</span> tmp;} |
420 | | <a name="l00651"></a>00651 |
421 | | <a name="l00653"></a><a class="code" href="classbdm_1_1BM.html#688d7a2aced1e06aa1c468d73a9e5eba">00653</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a> ( )<span class="keyword"> const </span>{it_error ( <span class="stringliteral">"Not implemented"</span> );<span class="keywordflow">return</span> NULL;}; |
422 | | <a name="l00655"></a><a class="code" href="classbdm_1_1BM.html#598b25e3f3d96a5bc00a5faeb5b3c912">00655</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs a conditional density 1-step ahead predictor.">predictor</a> ( )<span class="keyword"> const </span>{it_error ( <span class="stringliteral">"Not implemented"</span> );<span class="keywordflow">return</span> NULL;}; |
423 | | <a name="l00657"></a>00657 |
| 361 | <a name="l00517"></a>00517 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#4f31c03578a7b9b30d8b1f8c338a37e8" title="Shifts storage position for another time step.">step</a>() =0; |
| 362 | <a name="l00518"></a>00518 |
| 363 | <a name="l00520"></a><a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d">00520</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {}; |
| 364 | <a name="l00521"></a>00521 |
| 365 | <a name="l00523"></a><a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc">00523</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {}; |
| 366 | <a name="l00524"></a>00524 |
| 367 | <a name="l00525"></a>00525 }; |
| 368 | <a name="l00526"></a>00526 |
| 369 | <a name="l00530"></a><a class="code" href="classbdm_1_1mepdf.html">00530</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> { |
| 370 | <a name="l00531"></a>00531 <span class="keyword">public</span>: |
| 371 | <a name="l00533"></a><a class="code" href="classbdm_1_1mepdf.html#27cc32d1a810516c25bda51ddf886376">00533</a> <a class="code" href="classbdm_1_1mepdf.html#27cc32d1a810516c25bda51ddf886376" title="Default constructor.">mepdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* em ) :<a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> ( ) {<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>=<span class="keyword">const_cast<</span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>*<span class="keyword">></span> ( em );}; |
| 372 | <a name="l00534"></a><a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c">00534</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( <span class="keyword">const</span> vec &cond ) {} |
| 373 | <a name="l00535"></a>00535 }; |
| 374 | <a name="l00536"></a>00536 |
| 375 | <a name="l00539"></a><a class="code" href="classbdm_1_1compositepdf.html">00539</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1compositepdf.html" title="Abstract composition of pdfs, will be used for specific classes this abstract class...">compositepdf</a> { |
| 376 | <a name="l00540"></a>00540 <span class="keyword">protected</span>: |
| 377 | <a name="l00542"></a><a class="code" href="classbdm_1_1compositepdf.html#7ca3cd8ed92a7154f5b9ff13b1e9d52a">00542</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1compositepdf.html#7ca3cd8ed92a7154f5b9ff13b1e9d52a" title="Number of mpdfs in the composite.">n</a>; |
| 378 | <a name="l00544"></a><a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a">00544</a> Array<mpdf*> <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>; |
| 379 | <a name="l00545"></a>00545 <span class="keyword">public</span>: |
| 380 | <a name="l00546"></a>00546 <a class="code" href="classbdm_1_1compositepdf.html" title="Abstract composition of pdfs, will be used for specific classes this abstract class...">compositepdf</a> ( Array<mpdf*> A0 ) : <a class="code" href="classbdm_1_1compositepdf.html#7ca3cd8ed92a7154f5b9ff13b1e9d52a" title="Number of mpdfs in the composite.">n</a> ( A0.length() ), <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a> ( A0 ) {}; |
| 381 | <a name="l00548"></a>00548 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1compositepdf.html#c73d39acc4378eee6a63155c3517d3c9" title="find common rv, flag">getrv</a> ( <span class="keywordtype">bool</span> checkoverlap=<span class="keyword">false</span> ); |
| 382 | <a name="l00550"></a>00550 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1compositepdf.html#c71fc2c51f49d797e61f479f543c75ce" title="common rvc of all mpdfs is written to rvc">setrvc</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc ); |
| 383 | <a name="l00551"></a>00551 }; |
| 384 | <a name="l00552"></a>00552 |
| 385 | <a name="l00560"></a><a class="code" href="classbdm_1_1DS.html">00560</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { |
| 386 | <a name="l00561"></a>00561 <span class="keyword">protected</span>: |
| 387 | <a name="l00562"></a>00562 <span class="keywordtype">int</span> dtsize; |
| 388 | <a name="l00563"></a>00563 <span class="keywordtype">int</span> utsize; |
| 389 | <a name="l00565"></a><a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec">00565</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>; |
| 390 | <a name="l00567"></a><a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702">00567</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span> |
| 391 | <a name="l00569"></a><a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867">00569</a> <span class="comment"></span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut; |
| 392 | <a name="l00570"></a>00570 <span class="keyword">public</span>: |
| 393 | <a name="l00572"></a><a class="code" href="classbdm_1_1DS.html#bedd82e08ae6686b4b1732a122c2201a">00572</a> <a class="code" href="classbdm_1_1DS.html#bedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() :<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> ( ),<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> ( ) {}; |
| 394 | <a name="l00574"></a><a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba">00574</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &dt ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; |
| 395 | <a name="l00576"></a><a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832">00576</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a> ( vec &dt, <span class="keyword">const</span> ivec &indeces ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; |
| 396 | <a name="l00578"></a><a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a">00578</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> ( vec &ut ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; |
| 397 | <a name="l00580"></a><a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d">00580</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d" title="Accepts action variables at specific indeces.">write</a> ( vec &ut, <span class="keyword">const</span> ivec &indeces ) {it_error ( <span class="stringliteral">"abstract class"</span> );}; |
| 398 | <a name="l00581"></a>00581 |
| 399 | <a name="l00583"></a>00583 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#9a14c64d881e838ddc3a5617ee8a973b" title="Moves from to , i.e. perfroms the actions and reads response of the system.">step</a>() =0; |
| 400 | <a name="l00584"></a>00584 |
| 401 | <a name="l00586"></a><a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e">00586</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L ) { |
| 402 | <a name="l00587"></a>00587 it_assert_debug ( dtsize==<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(),<span class="stringliteral">""</span> ); |
| 403 | <a name="l00588"></a>00588 it_assert_debug ( utsize==<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(),<span class="stringliteral">""</span> ); |
| 404 | <a name="l00589"></a>00589 |
| 405 | <a name="l00590"></a>00590 <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>=L.<a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1">add</a> ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>,<span class="stringliteral">""</span> ); |
| 406 | <a name="l00591"></a>00591 L_ut=L.<a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1">add</a> ( <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>,<span class="stringliteral">""</span> ); |
| 407 | <a name="l00592"></a>00592 } |
| 408 | <a name="l00594"></a><a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf">00594</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L ) { |
| 409 | <a name="l00595"></a>00595 vec tmp ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() +<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() ); |
| 410 | <a name="l00596"></a>00596 <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( tmp ); |
| 411 | <a name="l00597"></a>00597 <span class="comment">// d is first in getdata</span> |
| 412 | <a name="l00598"></a>00598 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>,tmp.left ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() ) ); |
| 413 | <a name="l00599"></a>00599 <span class="comment">// u follows after d in getdata</span> |
| 414 | <a name="l00600"></a>00600 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( L_ut,tmp.mid ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(), <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() ) ); |
| 415 | <a name="l00601"></a>00601 } |
| 416 | <a name="l00603"></a><a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660">00603</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660" title="access function">_drv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> concat ( <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>,<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> );} |
| 417 | <a name="l00605"></a><a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33">00605</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>;} |
| 418 | <a name="l00606"></a>00606 }; |
| 419 | <a name="l00607"></a>00607 |
| 420 | <a name="l00629"></a><a class="code" href="classbdm_1_1BM.html">00629</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1bdmroot.html" title="Root class of BDM objects.">bdmroot</a> { |
| 421 | <a name="l00630"></a>00630 <span class="keyword">protected</span>: |
| 422 | <a name="l00632"></a><a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed">00632</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; |
| 423 | <a name="l00634"></a><a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a">00634</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; |
| 424 | <a name="l00636"></a><a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee">00636</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>; |
| 425 | <a name="l00637"></a>00637 <span class="keyword">public</span>: |
| 426 | <a name="l00640"></a>00640 |
| 427 | <a name="l00641"></a>00641 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> () :<a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( 0 ),<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( true ), <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a> ( 3 ), <a class="code" href="classbdm_1_1BM.html#a5e0000d2c9df99b029eceff222f7d77" title="Option for logging bounds.">opt_L_bounds</a> ( false ) {}; |
| 428 | <a name="l00642"></a>00642 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &B ) : <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ( B.<a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( B.<a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ), <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( B.<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ) {} |
| 429 | <a name="l00645"></a><a class="code" href="classbdm_1_1BM.html#40f01563651c1e4fe926189e41a6b8ab">00645</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#40f01563651c1e4fe926189e41a6b8ab">_copy_</a> ()<span class="keyword"> const </span>{<span class="keywordflow">return</span> NULL;}; |
| 430 | <a name="l00647"></a>00647 |
| 431 | <a name="l00650"></a>00650 |
| 432 | <a name="l00654"></a>00654 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> ( <span class="keyword">const</span> vec &dt ) = 0; |
| 433 | <a name="l00656"></a>00656 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> ( <span class="keyword">const</span> mat &Dt ); |
| 434 | <a name="l00659"></a><a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">00659</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( <span class="keyword">const</span> vec &dt )<span class="keyword"> const</span>{it_error ( <span class="stringliteral">"Not implemented"</span> );<span class="keywordflow">return</span> 0.0;} |
| 435 | <a name="l00661"></a><a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae">00661</a> vec <a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> ( <span class="keyword">const</span> mat &dt )<span class="keyword"> const</span>{vec tmp ( dt.cols() );<span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i=0;i<dt.cols();i++ ) {tmp ( i ) =<a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( dt.get_col ( i ) );}<span class="keywordflow">return</span> tmp;} |
432 | | <a name="l00676"></a>00676 |
433 | | <a name="l00677"></a>00677 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& _drv()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;} |
434 | | <a name="l00678"></a>00678 <span class="keywordtype">void</span> set_drv ( <span class="keyword">const</span> RV &rv ) {<a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>=rv;} |
435 | | <a name="l00679"></a>00679 <span class="keywordtype">void</span> set_rv ( <span class="keyword">const</span> RV &rv ) {<span class="keyword">const_cast<</span>epdf&<span class="keyword">></span> ( posterior() ).set_rv ( rv );} |
436 | | <a name="l00680"></a>00680 <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;} |
437 | | <a name="l00681"></a>00681 <span class="keywordtype">void</span> set_evalll ( <span class="keywordtype">bool</span> evl0 ) {<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>=evl0;} |
438 | | <a name="l00682"></a>00682 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf& posterior() <span class="keyword">const</span> =0; |
439 | | <a name="l00683"></a>00683 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf* _e() <span class="keyword">const</span> =0; |
440 | | <a name="l00685"></a>00685 |
441 | | <a name="l00688"></a>00688 |
442 | | <a name="l00690"></a><a class="code" href="classbdm_1_1BM.html#224dd68a83c1472b43163763fa93c477">00690</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#224dd68a83c1472b43163763fa93c477" title="Set boolean options from a string.">set_options</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span> &opt ) { |
443 | | <a name="l00691"></a>00691 <a class="code" href="classbdm_1_1BM.html#a5e0000d2c9df99b029eceff222f7d77" title="Option for logging bounds.">opt_L_bounds</a>= ( opt.find ( <span class="stringliteral">"logbounds"</span> ) !=string::npos ); |
444 | | <a name="l00692"></a>00692 } |
445 | | <a name="l00694"></a><a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca">00694</a> ivec <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a>; |
446 | | <a name="l00695"></a>00695 |
447 | | <a name="l00697"></a><a class="code" href="classbdm_1_1BM.html#a5e0000d2c9df99b029eceff222f7d77">00697</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#a5e0000d2c9df99b029eceff222f7d77" title="Option for logging bounds.">opt_L_bounds</a>; |
448 | | <a name="l00699"></a><a class="code" href="classbdm_1_1BM.html#aa5d1f7e638db229403e3917bf155ee3">00699</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#aa5d1f7e638db229403e3917bf155ee3" title="Add all logged variables to a logger.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> *L, <span class="keyword">const</span> <span class="keywordtype">string</span> &name=<span class="stringliteral">""</span> ) { |
449 | | <a name="l00700"></a>00700 <span class="comment">// internal</span> |
450 | | <a name="l00701"></a>00701 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r; |
451 | | <a name="l00702"></a>00702 <span class="keywordflow">if</span> ( posterior().isnamed() ) {r=posterior().<a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();} |
452 | | <a name="l00703"></a>00703 <span class="keywordflow">else</span>{r=<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">"est"</span>, posterior().dimension() );}; |
453 | | <a name="l00704"></a>00704 |
454 | | <a name="l00705"></a>00705 <span class="comment">// Add mean value</span> |
455 | | <a name="l00706"></a>00706 <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a> ( 0 ) =L-><a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1">add</a> ( r,name ); |
456 | | <a name="l00707"></a>00707 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a5e0000d2c9df99b029eceff222f7d77" title="Option for logging bounds.">opt_L_bounds</a> ) { |
457 | | <a name="l00708"></a>00708 <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a> ( 1 ) =L-><a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1">add</a> ( r,name+<span class="stringliteral">"_lb"</span> ); |
458 | | <a name="l00709"></a>00709 <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a> ( 2 ) =L-><a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1">add</a> ( r,name+<span class="stringliteral">"_ub"</span> ); |
459 | | <a name="l00710"></a>00710 } |
460 | | <a name="l00711"></a>00711 } |
461 | | <a name="l00712"></a>00712 <span class="keywordtype">void</span> logit ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> *L ) { |
462 | | <a name="l00713"></a>00713 L-><a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a> ( 0 ), posterior().mean() ); |
463 | | <a name="l00714"></a>00714 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a5e0000d2c9df99b029eceff222f7d77" title="Option for logging bounds.">opt_L_bounds</a> ) { |
464 | | <a name="l00715"></a>00715 vec ub,lb; |
465 | | <a name="l00716"></a>00716 posterior().<a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a>(lb,ub); |
466 | | <a name="l00717"></a>00717 L-><a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a> ( 1 ), lb ); |
467 | | <a name="l00718"></a>00718 L-><a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a> ( 2 ), ub ); |
468 | | <a name="l00719"></a>00719 } |
469 | | <a name="l00720"></a>00720 } |
470 | | <a name="l00722"></a>00722 }; |
471 | | <a name="l00723"></a>00723 |
472 | | <a name="l00724"></a>00724 }; <span class="comment">//namespace</span> |
473 | | <a name="l00725"></a>00725 <span class="preprocessor">#endif // BM_H</span> |
| 441 | <a name="l00675"></a><a class="code" href="classbdm_1_1BM.html#de95c590d650b2db423d53992f0906cb">00675</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rvc; |
| 442 | <a name="l00677"></a><a class="code" href="classbdm_1_1BM.html#b5e8e016be16e4029c789063cb3f3b33">00677</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1BM.html#b5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> rvc;} |
| 443 | <a name="l00678"></a>00678 |
| 444 | <a name="l00680"></a><a class="code" href="classbdm_1_1BM.html#6799f4b16a6a59ed58b1d0d6e17116f4">00680</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a> ( <span class="keyword">const</span> vec &val ) {it_error ( <span class="stringliteral">"Not implemented!"</span> );}; |
| 445 | <a name="l00681"></a>00681 |
| 446 | <a name="l00683"></a>00683 |
| 447 | <a name="l00684"></a>00684 |
| 448 | <a name="l00687"></a>00687 |
| 449 | <a name="l00688"></a>00688 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& _drv()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;} |
| 450 | <a name="l00689"></a>00689 <span class="keywordtype">void</span> set_drv ( <span class="keyword">const</span> RV &rv ) {<a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>=rv;} |
| 451 | <a name="l00690"></a>00690 <span class="keywordtype">void</span> set_rv ( <span class="keyword">const</span> RV &rv ) {<span class="keyword">const_cast<</span>epdf&<span class="keyword">></span> ( posterior() ).set_rv ( rv );} |
| 452 | <a name="l00691"></a>00691 <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;} |
| 453 | <a name="l00692"></a>00692 <span class="keywordtype">void</span> set_evalll ( <span class="keywordtype">bool</span> evl0 ) {<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>=evl0;} |
| 454 | <a name="l00693"></a>00693 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf& posterior() <span class="keyword">const</span> =0; |
| 455 | <a name="l00694"></a>00694 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf* _e() <span class="keyword">const</span> =0; |
| 456 | <a name="l00696"></a>00696 |
| 457 | <a name="l00699"></a>00699 |
| 458 | <a name="l00701"></a><a class="code" href="classbdm_1_1BM.html#224dd68a83c1472b43163763fa93c477">00701</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#224dd68a83c1472b43163763fa93c477" title="Set boolean options from a string.">set_options</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span> &opt ) { |
| 459 | <a name="l00702"></a>00702 <a class="code" href="classbdm_1_1BM.html#a5e0000d2c9df99b029eceff222f7d77" title="Option for logging bounds.">opt_L_bounds</a>= ( opt.find ( <span class="stringliteral">"logbounds"</span> ) !=string::npos ); |
| 460 | <a name="l00703"></a>00703 } |
| 461 | <a name="l00705"></a><a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca">00705</a> ivec <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a>; |
| 462 | <a name="l00706"></a>00706 |
| 463 | <a name="l00708"></a><a class="code" href="classbdm_1_1BM.html#a5e0000d2c9df99b029eceff222f7d77">00708</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#a5e0000d2c9df99b029eceff222f7d77" title="Option for logging bounds.">opt_L_bounds</a>; |
| 464 | <a name="l00710"></a><a class="code" href="classbdm_1_1BM.html#aa5d1f7e638db229403e3917bf155ee3">00710</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#aa5d1f7e638db229403e3917bf155ee3" title="Add all logged variables to a logger.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> *L, <span class="keyword">const</span> <span class="keywordtype">string</span> &name=<span class="stringliteral">""</span> ) { |
| 465 | <a name="l00711"></a>00711 <span class="comment">// internal</span> |
| 466 | <a name="l00712"></a>00712 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r; |
| 467 | <a name="l00713"></a>00713 <span class="keywordflow">if</span> ( posterior().isnamed() ) {r=posterior().<a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();} |
| 468 | <a name="l00714"></a>00714 <span class="keywordflow">else</span>{r=<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">"est"</span>, posterior().dimension() );}; |
| 469 | <a name="l00715"></a>00715 |
| 470 | <a name="l00716"></a>00716 <span class="comment">// Add mean value</span> |
| 471 | <a name="l00717"></a>00717 <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a> ( 0 ) =L-><a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1">add</a> ( r,name ); |
| 472 | <a name="l00718"></a>00718 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a5e0000d2c9df99b029eceff222f7d77" title="Option for logging bounds.">opt_L_bounds</a> ) { |
| 473 | <a name="l00719"></a>00719 <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a> ( 1 ) =L-><a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1">add</a> ( r,name+<span class="stringliteral">"_lb"</span> ); |
| 474 | <a name="l00720"></a>00720 <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a> ( 2 ) =L-><a class="code" href="classbdm_1_1logger.html#cfb4807e20b3d00f3d33e55ada528dc1">add</a> ( r,name+<span class="stringliteral">"_ub"</span> ); |
| 475 | <a name="l00721"></a>00721 } |
| 476 | <a name="l00722"></a>00722 } |
| 477 | <a name="l00723"></a>00723 <span class="keywordtype">void</span> logit ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> *L ) { |
| 478 | <a name="l00724"></a>00724 L-><a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a> ( 0 ), posterior().mean() ); |
| 479 | <a name="l00725"></a>00725 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a5e0000d2c9df99b029eceff222f7d77" title="Option for logging bounds.">opt_L_bounds</a> ) { |
| 480 | <a name="l00726"></a>00726 vec ub,lb; |
| 481 | <a name="l00727"></a>00727 posterior().<a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( lb,ub ); |
| 482 | <a name="l00728"></a>00728 L-><a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a> ( 1 ), lb ); |
| 483 | <a name="l00729"></a>00729 L-><a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers.">LIDs</a> ( 2 ), ub ); |
| 484 | <a name="l00730"></a>00730 } |
| 485 | <a name="l00731"></a>00731 } |
| 486 | <a name="l00733"></a>00733 }; |
| 487 | <a name="l00734"></a>00734 |
| 488 | <a name="l00735"></a>00735 }; <span class="comment">//namespace</span> |
| 489 | <a name="l00736"></a>00736 <span class="preprocessor">#endif // BM_H</span> |