Index: doc/html/classbdm_1_1PF.html
===================================================================
--- doc/html/classbdm_1_1PF.html (revision 323)
+++ doc/html/classbdm_1_1PF.html (revision 353)
@@ -88,4 +88,16 @@
 
 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">access function <br></td></tr>
+<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="3d95e9de79ca1d52b06f1b8f80660f09"></a><!-- doxytag: member="bdm::PF::ToString" ref="3d95e9de79ca1d52b06f1b8f80660f09" args="()" -->
+virtual string&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1bdmroot.html#3d95e9de79ca1d52b06f1b8f80660f09">ToString</a> ()</td></tr>
+
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">This method returns a basic info about the current instance. <br></td></tr>
+<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="d4602efd3ad9fb9e4532426e4f488df8"></a><!-- doxytag: member="bdm::PF::from_setting" ref="d4602efd3ad9fb9e4532426e4f488df8" args="(const Setting &amp;root)" -->
+virtual void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1bdmroot.html#d4602efd3ad9fb9e4532426e4f488df8">from_setting</a> (const Setting &amp;root)</td></tr>
+
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">This method arrange instance properties according the data stored in the Setting structure. <br></td></tr>
+<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="a80210bbe266bf26f100f342460a313f"></a><!-- doxytag: member="bdm::PF::to_setting" ref="a80210bbe266bf26f100f342460a313f" args="(Setting &amp;root)" -->
+virtual void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1bdmroot.html#a80210bbe266bf26f100f342460a313f">to_setting</a> (Setting &amp;root)</td></tr>
+
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">This method save all the instance properties into the Setting structure. <br></td></tr>
 <tr><td colspan="2"><div class="groupHeader">Constructors</div></td></tr>
 <tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="297339fd48bc1cfd011d16603d54accb"></a><!-- doxytag: member="bdm::PF::PF" ref="297339fd48bc1cfd011d16603d54accb" args="()" -->
@@ -156,5 +168,5 @@
 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">pointer into <code><a class="el" href="classbdm_1_1eEmp.html" title="Weighted empirical density.">eEmp</a></code> <br></td></tr>
 <tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="914bd66025692c4018dbd482cb3c47c1"></a><!-- doxytag: member="bdm::PF::_samples" ref="914bd66025692c4018dbd482cb3c47c1" args="" -->
-Array&lt; vec &gt; &amp;&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1PF.html#914bd66025692c4018dbd482cb3c47c1">_samples</a></td></tr>
+<a class="el" href="classitpp_1_1Array.html">Array</a>&lt; vec &gt; &amp;&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1PF.html#914bd66025692c4018dbd482cb3c47c1">_samples</a></td></tr>
 
 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">pointer into <code><a class="el" href="classbdm_1_1eEmp.html" title="Weighted empirical density.">eEmp</a></code> <br></td></tr>
@@ -217,9 +229,9 @@
 ivec&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca">LIDs</a></td></tr>
 
-<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">IDs of storages in loggers. <br></td></tr>
-<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="a5e0000d2c9df99b029eceff222f7d77"></a><!-- doxytag: member="bdm::PF::opt_L_bounds" ref="a5e0000d2c9df99b029eceff222f7d77" args="" -->
-bool&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1BM.html#a5e0000d2c9df99b029eceff222f7d77">opt_L_bounds</a></td></tr>
-
-<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Option for logging bounds. <br></td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll]. <br></td></tr>
+<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="398b7e7a162cf37d0022d6126495f207"></a><!-- doxytag: member="bdm::PF::LFlags" ref="398b7e7a162cf37d0022d6126495f207" args="" -->
+ivec&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207">LFlags</a></td></tr>
+
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Flags for logging - same size as LIDs, each entry correspond to the same in LIDs. <br></td></tr>
 </table>
 <hr><a name="_details"></a><h2>Detailed Description</h2>
@@ -278,5 +290,5 @@
 <p>Reimplemented in <a class="el" href="classbdm_1_1MPF.html#286d040770d08bd7ff416cea617b1b14">bdm::MPF&lt; BM_T &gt;</a>.</p>
 
-<p>References <a class="el" href="libBM_8h-source.html#l00347">bdm::mpdf::_e()</a>, <a class="el" href="libPF_8h-source.html#l00036">_samples</a>, <a class="el" href="libPF_8h-source.html#l00034">_w</a>, <a class="el" href="libPF_8h-source.html#l00032">est</a>, <a class="el" href="libBM_8h-source.html#l00246">bdm::epdf::evallog()</a>, <a class="el" href="libBM_8h-source.html#l00332">bdm::mpdf::evallogcond()</a>, <a class="el" href="libPF_8h-source.html#l00030">n</a>, <a class="el" href="libPF_8h-source.html#l00040">obs</a>, <a class="el" href="libPF_8h-source.html#l00038">par</a>, <a class="el" href="libEF_8cpp-source.html#l00185">bdm::eEmp::resample()</a>, <a class="el" href="libPF_8h-source.html#l00043">resmethod</a>, and <a class="el" href="libBM_8h-source.html#l00316">bdm::mpdf::samplecond()</a>.</p>
+<p>References <a class="el" href="libBM_8h-source.html#l00370">bdm::mpdf::_e()</a>, <a class="el" href="libPF_8h-source.html#l00036">_samples</a>, <a class="el" href="libPF_8h-source.html#l00034">_w</a>, <a class="el" href="libPF_8h-source.html#l00032">est</a>, <a class="el" href="libBM_8h-source.html#l00269">bdm::epdf::evallog()</a>, <a class="el" href="libBM_8h-source.html#l00355">bdm::mpdf::evallogcond()</a>, <a class="el" href="log__exp_8h-source.html#l00172">itpp::exp()</a>, <a class="el" href="libPF_8h-source.html#l00030">n</a>, <a class="el" href="libPF_8h-source.html#l00040">obs</a>, <a class="el" href="libPF_8h-source.html#l00038">par</a>, <a class="el" href="libEF_8cpp-source.html#l00216">bdm::eEmp::resample()</a>, <a class="el" href="libPF_8h-source.html#l00043">resmethod</a>, <a class="el" href="libBM_8h-source.html#l00339">bdm::mpdf::samplecond()</a>, and <a class="el" href="matfunc_8h-source.html#l00077">itpp::sum()</a>.</p>
 
 </div>
@@ -302,5 +314,7 @@
 <p>Reimplemented in <a class="el" href="classbdm_1_1ARX.html#080a7e531e3aa06694112863b15bc6a4">bdm::ARX</a>, <a class="el" href="classbdm_1_1MixEF.html#da724da464a75e07521941e430929efa">bdm::MixEF</a>, and <a class="el" href="classbdm_1_1multiBM.html#e157b607c1e3fa91d42aeea44458e2bf">bdm::multiBM</a>.</p>
 
-<p>Referenced by <a class="el" href="libBM_8h-source.html#l00662">bdm::BM::logpred_m()</a>.</p>
+<p>References <a class="el" href="itassert_8h-source.html#l00126">it_error</a>.</p>
+
+<p>Referenced by <a class="el" href="libBM_8h-source.html#l00690">bdm::BM::logpred_m()</a>.</p>
 
 </div>
@@ -316,5 +330,5 @@
           <td class="paramname"> <em>opt</em>          </td>
           <td>&nbsp;)&nbsp;</td>
-          <td><code> [inline]</code></td>
+          <td><code> [inline, virtual]</code></td>
         </tr>
       </table>
@@ -324,5 +338,5 @@
 <p>
 Set posterior density by sampling from epdf0 
-<p>Reimplemented from <a class="el" href="classbdm_1_1BM.html#224dd68a83c1472b43163763fa93c477">bdm::BM</a>.</p>
+<p>Reimplemented from <a class="el" href="classbdm_1_1BM.html#adb539fa2585c8a2a91c54e5aebf330e">bdm::BM</a>.</p>
 
 <p>Reimplemented in <a class="el" href="classbdm_1_1MPF.html#2e95498dec734088ab9f4878ff404144">bdm::MPF&lt; BM_T &gt;</a>.</p>
@@ -335,5 +349,5 @@
 <li><a class="el" href="libPF_8h-source.html">libPF.h</a><li>libPF.cpp</ul>
 </div>
-<hr size="1"><address style="text-align: right;"><small>Generated on Thu Apr 23 21:06:45 2009 for mixpp by&nbsp;
+<hr size="1"><address style="text-align: right;"><small>Generated on Tue Jun 2 10:02:18 2009 for mixpp by&nbsp;
 <a href="http://www.doxygen.org/index.html">
 <img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.5.8 </small></address>
