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    r354 r368  
    9191 
    9292<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Update <code>ep</code> so that it represents this <a class="el" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> conditioned on <code>rvc</code> = cond. <br></td></tr> 
     93<tr><td class="memItemLeft" nowrap align="right" valign="top">void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1migamma__ref.html#6ab1cf56dd7b718c285ee65d8953cf3e">from_setting</a> (const Setting &amp;root)</td></tr> 
     94 
    9395<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="8b10ab922e2a7bae2fb6bb3efc7b6151"></a><!-- doxytag: member="bdm::migamma_ref::set_parameters" ref="8b10ab922e2a7bae2fb6bb3efc7b6151" args="(int len, double k0)" --> 
    9496void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1migamma.html#8b10ab922e2a7bae2fb6bb3efc7b6151">set_parameters</a> (int len, double k0)</td></tr> 
    9597 
    9698<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Set value of <code>k</code>. <br></td></tr> 
    97 <tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="3d95e9de79ca1d52b06f1b8f80660f09"></a><!-- doxytag: member="bdm::migamma_ref::ToString" ref="3d95e9de79ca1d52b06f1b8f80660f09" args="()" --> 
    98 virtual string&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1bdmroot.html#3d95e9de79ca1d52b06f1b8f80660f09">ToString</a> ()</td></tr> 
     99<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="e47a8bd9337478fa4e46d5a2a4336f9a"></a><!-- doxytag: member="bdm::migamma_ref::to_string" ref="e47a8bd9337478fa4e46d5a2a4336f9a" args="()" --> 
     100virtual string&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1bdmroot.html#e47a8bd9337478fa4e46d5a2a4336f9a">to_string</a> ()</td></tr> 
    99101 
    100102<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">This method returns a basic info about the current instance. <br></td></tr> 
    101 <tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="d4602efd3ad9fb9e4532426e4f488df8"></a><!-- doxytag: member="bdm::migamma_ref::from_setting" ref="d4602efd3ad9fb9e4532426e4f488df8" args="(const Setting &amp;root)" --> 
    102 virtual void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1bdmroot.html#d4602efd3ad9fb9e4532426e4f488df8">from_setting</a> (const Setting &amp;root)</td></tr> 
    103  
    104 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">This method arrange instance properties according the data stored in the Setting structure. <br></td></tr> 
    105103<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="dd74cb898b22b95b7ee528e040a07618"></a><!-- doxytag: member="bdm::migamma_ref::to_setting" ref="dd74cb898b22b95b7ee528e040a07618" args="(Setting &amp;root) const " --> 
    106104virtual void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1bdmroot.html#dd74cb898b22b95b7ee528e040a07618">to_setting</a> (Setting &amp;root) const </td></tr> 
    107105 
    108106<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">This method save all the instance properties into the Setting structure. <br></td></tr> 
     107<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="d8cc21ea15fc723065eed5f3100757a5"></a><!-- doxytag: member="bdm::migamma_ref::validate" ref="d8cc21ea15fc723065eed5f3100757a5" args="()" --> 
     108virtual void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1bdmroot.html#d8cc21ea15fc723065eed5f3100757a5">validate</a> ()</td></tr> 
     109 
     110<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">This method TODO. <br></td></tr> 
    109111<tr><td colspan="2"><div class="groupHeader">Matematical operations</div></td></tr> 
    110112<tr><td class="memItemLeft" nowrap align="right" valign="top">virtual vec&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mpdf.html#f0c1db6fcbb3aae2dd6123884457a367">samplecond</a> (const vec &amp;cond)</td></tr> 
     
    198200==== Check == vv = Standard deviation of the random walk is proportional to one <img class="formulaInl" alt="$k$" src="form_68.png">-th the mean. This is achieved by setting <img class="formulaInl" alt="$\alpha=k$" src="form_69.png"> and <img class="formulaInl" alt="$\beta=k/\mu$" src="form_70.png">.<p> 
    199201The standard deviation of the walk is then: <img class="formulaInl" alt="$\mu/\sqrt(k)$" src="form_71.png">. <hr><h2>Member Function Documentation</h2> 
     202<a class="anchor" name="6ab1cf56dd7b718c285ee65d8953cf3e"></a><!-- doxytag: member="bdm::migamma_ref::from_setting" ref="6ab1cf56dd7b718c285ee65d8953cf3e" args="(const Setting &amp;root)" --> 
     203<div class="memitem"> 
     204<div class="memproto"> 
     205      <table class="memname"> 
     206        <tr> 
     207          <td class="memname">void bdm::migamma_ref::from_setting           </td> 
     208          <td>(</td> 
     209          <td class="paramtype">const Setting &amp;&nbsp;</td> 
     210          <td class="paramname"> <em>root</em>          </td> 
     211          <td>&nbsp;)&nbsp;</td> 
     212          <td><code> [virtual]</code></td> 
     213        </tr> 
     214      </table> 
     215</div> 
     216<div class="memdoc"> 
     217 
     218<p> 
     219<a class="el" href="classbdm_1_1UI.html" title="This class serves to load and/or save DOMElements into/from files stored on a hard-disk...">UI</a> for <a class="el" href="classbdm_1_1migamma__ref.html" title="Inverse-Gamma random walk around a fixed point.">migamma_ref</a><p> 
     220The <a class="el" href="classbdm_1_1migamma__ref.html" title="Inverse-Gamma random walk around a fixed point.">migamma_ref</a> is constructed from a structure with fields: <div class="fragment"><pre class="fragment">                        system = { 
     221                                type = <span class="stringliteral">"migamma_ref"</span>; 
     222                                ref = [1e-5; 1e-5; 1e-2 1e-3];            <span class="comment">// reference vector</span> 
     223                                <a class="code" href="classbdm_1_1migamma__ref.html#cdc1345ba8375fbdb18a69322d2f841d" title="parameter l">l</a> = 0.999;                                <span class="comment">// constant l</span> 
     224                                <a class="code" href="classbdm_1_1migamma.html#dc56bc9da542e0103ec16b9be8e5e38c" title="Constant .">k</a> = 0.1;                                  <span class="comment">// constant k</span> 
     225                                 
     226                                <span class="comment">// == OPTIONAL ==</span> 
     227                                <span class="comment">// description of y variables</span> 
     228                                y = {type=<span class="stringliteral">"rv"</span>; names=[<span class="stringliteral">"y"</span>, <span class="stringliteral">"u"</span>];}; 
     229                                <span class="comment">// description of u variable</span> 
     230                                u = {type=<span class="stringliteral">"rv"</span>; names=[];} 
     231                        }; 
     232</pre></div><p> 
     233Result if  
     234<p>Reimplemented from <a class="el" href="classbdm_1_1bdmroot.html#d4602efd3ad9fb9e4532426e4f488df8">bdm::bdmroot</a>.</p> 
     235 
     236<p>References <a class="el" href="user__info_8h-source.html#l00249">bdm::UI::get()</a>, and <a class="el" href="libEF_8h-source.html#l00748">set_parameters()</a>.</p> 
     237 
     238</div> 
     239</div><p> 
    200240<a class="anchor" name="f0c1db6fcbb3aae2dd6123884457a367"></a><!-- doxytag: member="bdm::migamma_ref::samplecond" ref="f0c1db6fcbb3aae2dd6123884457a367" args="(const vec &amp;cond)" --> 
    201241<div class="memitem"> 
     
    225265<p>Reimplemented in <a class="el" href="classbdm_1_1mprod.html#ee715a8013acf9892f6cb489db595555">bdm::mprod</a>.</p> 
    226266 
    227 <p>References <a class="el" href="libBM_8h-source.html#l00353">bdm::mpdf::condition()</a>, <a class="el" href="libBM_8h-source.html#l00326">bdm::mpdf::ep</a>, and <a class="el" href="libBM_8h-source.html#l00266">bdm::epdf::sample()</a>.</p> 
    228  
    229 <p>Referenced by <a class="el" href="libPF_8h-source.html#l00207">bdm::MPF&lt; BM_T &gt;::bayes()</a>, <a class="el" href="libPF_8cpp-source.html#l00007">bdm::PF::bayes()</a>, and <a class="el" href="libDS_8cpp-source.html#l00042">bdm::ArxDS::step()</a>.</p> 
     267<p>References <a class="el" href="libBM_8h-source.html#l00345">bdm::mpdf::condition()</a>, <a class="el" href="libBM_8h-source.html#l00318">bdm::mpdf::ep</a>, and <a class="el" href="libBM_8h-source.html#l00258">bdm::epdf::sample()</a>.</p> 
     268 
     269<p>Referenced by <a class="el" href="libPF_8h-source.html#l00207">bdm::MPF&lt; BM_T &gt;::bayes()</a>, <a class="el" href="libPF_8cpp-source.html#l00007">bdm::PF::bayes()</a>, and <a class="el" href="libDS_8cpp-source.html#l00044">bdm::ArxDS::step()</a>.</p> 
    230270 
    231271</div> 
     
    266306</dl> 
    267307 
    268 <p>References <a class="el" href="libBM_8h-source.html#l00353">bdm::mpdf::condition()</a>, <a class="el" href="libBM_8h-source.html#l00310">bdm::epdf::dimension()</a>, <a class="el" href="libBM_8h-source.html#l00326">bdm::mpdf::ep</a>, and <a class="el" href="libBM_8h-source.html#l00266">bdm::epdf::sample()</a>.</p> 
     308<p>References <a class="el" href="libBM_8h-source.html#l00345">bdm::mpdf::condition()</a>, <a class="el" href="libBM_8h-source.html#l00302">bdm::epdf::dimension()</a>, <a class="el" href="libBM_8h-source.html#l00318">bdm::mpdf::ep</a>, and <a class="el" href="libBM_8h-source.html#l00258">bdm::epdf::sample()</a>.</p> 
    269309 
    270310</div> 
    271311</div><p> 
    272 <hr>The documentation for this class was generated from the following file:<ul> 
    273 <li><a class="el" href="libEF_8h-source.html">libEF.h</a></ul> 
    274 </div> 
    275 <hr size="1"><address style="text-align: right;"><small>Generated on Tue Jun 2 10:11:01 2009 for mixpp by&nbsp; 
     312<hr>The documentation for this class was generated from the following files:<ul> 
     313<li><a class="el" href="libEF_8h-source.html">libEF.h</a><li>libEF.cpp</ul> 
     314</div> 
     315<hr size="1"><address style="text-align: right;"><small>Generated on Mon Jun 8 18:02:35 2009 for mixpp by&nbsp; 
    276316<a href="http://www.doxygen.org/index.html"> 
    277317<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.5.8 </small></address>