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  • library/doc/html/bdmbase_8h-source.html

    r401 r538  
    5252      <li><a href="main.html"><span>Main&nbsp;Page</span></a></li> 
    5353      <li><a href="pages.html"><span>Related&nbsp;Pages</span></a></li> 
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    5554      <li><a href="annotated.html"><span>Classes</span></a></li> 
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    … …  
    7170<a name="l00018"></a>00018 <span class="preprocessor">#include "../itpp_ext.h"</span> 
    7271<a name="l00019"></a>00019 <span class="preprocessor">#include "../bdmroot.h"</span> 
    73 <a name="l00020"></a>00020 <span class="preprocessor">#include "<a class="code" href="user__info_8h.html" title="UI (user info) class for loading/saving objects from/to configuration files. It is...">user_info.h</a>"</span> 
    74 <a name="l00021"></a>00021  
     72<a name="l00020"></a>00020 <span class="preprocessor">#include "../shared_ptr.h"</span> 
     73<a name="l00021"></a>00021 <span class="preprocessor">#include "<a class="code" href="user__info_8h.html" title="UI (user info) class for loading/saving objects from/to configuration files. It is...">user_info.h</a>"</span> 
    7574<a name="l00022"></a>00022  
    7675<a name="l00023"></a>00023 <span class="keyword">using namespace </span>libconfig; 
    … …  
    8281<a name="l00029"></a>00029  
    8382<a name="l00030"></a>00030 <span class="keyword">typedef</span> std::map&lt;string, int&gt; RVmap; 
    84 <a name="l00031"></a>00031 <span class="keyword">extern</span> ivec RV_SIZES; 
    85 <a name="l00032"></a>00032 <span class="keyword">extern</span> Array&lt;string&gt; RV_NAMES; 
    86 <a name="l00033"></a>00033  
    87 <a name="l00035"></a><a class="code" href="classbdm_1_1str.html">00035</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1str.html" title="Structure of RV (used internally), i.e. expanded RVs - TODO tak proc je ve verejnem...">str</a> 
    88 <a name="l00036"></a>00036 { 
    89 <a name="l00037"></a>00037 <span class="keyword">public</span>: 
    90 <a name="l00039"></a><a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0">00039</a>   ivec <a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a>; 
    91 <a name="l00041"></a><a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a">00041</a>   ivec <a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a>; 
    92 <a name="l00043"></a><a class="code" href="classbdm_1_1str.html#7c6b9dccc6814d7bd1e8e2208a0d3f3f">00043</a>   <a class="code" href="classbdm_1_1str.html#7c6b9dccc6814d7bd1e8e2208a0d3f3f" title="Default constructor.">str</a>(ivec ids0, ivec times0) : <a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a>(ids0), <a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a>(times0) { 
    93 <a name="l00044"></a>00044     it_assert_debug(times0.length() == ids0.length(), <span class="stringliteral">"Incompatible input"</span>); 
    94 <a name="l00045"></a>00045   }; 
    95 <a name="l00046"></a>00046 }; 
    96 <a name="l00047"></a>00047  
    97 <a name="l00086"></a><a class="code" href="classbdm_1_1RV.html">00086</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> 
    98 <a name="l00087"></a>00087 { 
    99 <a name="l00088"></a>00088 <span class="keyword">protected</span>: 
    100 <a name="l00090"></a><a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb">00090</a>   <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>; 
    101 <a name="l00092"></a><a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385">00092</a>   <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>; 
    102 <a name="l00094"></a><a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b">00094</a>   ivec <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>; 
    103 <a name="l00096"></a><a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896">00096</a>   ivec <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>; 
    104 <a name="l00097"></a>00097  
    105 <a name="l00098"></a>00098 <span class="keyword">private</span>: 
    106 <a name="l00100"></a>00100   <span class="keywordtype">void</span> init(Array&lt;std::string&gt; in_names, ivec in_sizes, ivec in_times); 
    107 <a name="l00101"></a>00101   <span class="keywordtype">int</span> init(<span class="keyword">const</span>  <span class="keywordtype">string</span> &amp;name, <span class="keywordtype">int</span> size); 
    108 <a name="l00102"></a>00102 <span class="keyword">public</span>: 
    109 <a name="l00105"></a>00105  
    110 <a name="l00107"></a><a class="code" href="classbdm_1_1RV.html#3d93da01a64dab31074b25b7d93e5eae">00107</a>   <a class="code" href="classbdm_1_1RV.html#3d93da01a64dab31074b25b7d93e5eae" title="Full constructor.">RV</a>(Array&lt;std::string&gt; in_names, ivec in_sizes, ivec in_times) {init(in_names, in_sizes, in_times);}; 
    111 <a name="l00109"></a><a class="code" href="classbdm_1_1RV.html#5bd1bd9ec51b91578ecc83a6b2398a20">00109</a>   <a class="code" href="classbdm_1_1RV.html#5bd1bd9ec51b91578ecc83a6b2398a20" title="Constructor with times=0.">RV</a>(Array&lt;std::string&gt; in_names, ivec in_sizes) {init(in_names, in_sizes, zeros_i(in_names.length()));}; 
    112 <a name="l00111"></a><a class="code" href="classbdm_1_1RV.html#a222dfef569e8f123180d40fde97c1cd">00111</a>   <a class="code" href="classbdm_1_1RV.html#a222dfef569e8f123180d40fde97c1cd" title="Constructor with sizes=1, times=0.">RV</a>(Array&lt;std::string&gt; in_names) {init(in_names, ones_i(in_names.length()), zeros_i(in_names.length()));} 
    113 <a name="l00113"></a><a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412">00113</a>   <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a>() : <a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>(0), <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>(0), <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(0), <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>(0) {}; 
    114 <a name="l00115"></a>00115   <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a>(<span class="keywordtype">string</span> name, <span class="keywordtype">int</span> sz, <span class="keywordtype">int</span> tm = 0); 
     83<a name="l00032"></a>00032 <span class="keyword">extern</span> ivec RV_SIZES; 
     84<a name="l00034"></a>00034 <span class="keyword">extern</span> Array&lt;string&gt; RV_NAMES; 
     85<a name="l00035"></a>00035  
     86<a name="l00037"></a><a class="code" href="classbdm_1_1str.html">00037</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> 
     87<a name="l00038"></a>00038 { 
     88<a name="l00039"></a>00039         <span class="keyword">public</span>: 
     89<a name="l00041"></a><a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0">00041</a>                 ivec <a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a>; 
     90<a name="l00043"></a><a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a">00043</a>                 ivec <a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a>; 
     91<a name="l00045"></a><a class="code" href="classbdm_1_1str.html#7c6b9dccc6814d7bd1e8e2208a0d3f3f">00045</a>                 <a class="code" href="classbdm_1_1str.html#7c6b9dccc6814d7bd1e8e2208a0d3f3f" title="Default constructor.">str</a> (ivec ids0, ivec times0) : <a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a> (ids0), <a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a> (times0) { 
     92<a name="l00046"></a>00046                         it_assert_debug (times0.length() == ids0.length(), <span class="stringliteral">"Incompatible input"</span>); 
     93<a name="l00047"></a>00047                 }; 
     94<a name="l00048"></a>00048 }; 
     95<a name="l00049"></a>00049  
     96<a name="l00088"></a><a class="code" href="classbdm_1_1RV.html">00088</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> 
     97<a name="l00089"></a>00089 { 
     98<a name="l00090"></a>00090         <span class="keyword">protected</span>: 
     99<a name="l00092"></a><a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb">00092</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>; 
     100<a name="l00094"></a><a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385">00094</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>; 
     101<a name="l00096"></a><a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b">00096</a>                 ivec <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>; 
     102<a name="l00098"></a><a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896">00098</a>                 ivec <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>; 
     103<a name="l00099"></a>00099  
     104<a name="l00100"></a>00100         <span class="keyword">private</span>: 
     105<a name="l00102"></a>00102                 <span class="keywordtype">void</span> init (<span class="keyword">const</span> Array&lt;std::string&gt; &amp;in_names, <span class="keyword">const</span> ivec &amp;in_sizes, <span class="keyword">const</span> ivec &amp;in_times); 
     106<a name="l00103"></a>00103                 <span class="keywordtype">int</span> init (<span class="keyword">const</span> <span class="keywordtype">string</span> &amp;name, <span class="keywordtype">int</span> size); 
     107<a name="l00104"></a>00104         <span class="keyword">public</span>: 
     108<a name="l00107"></a>00107  
     109<a name="l00109"></a><a class="code" href="classbdm_1_1RV.html#3fa35c2744e687c74f7742990e6aa264">00109</a>                 <a class="code" href="classbdm_1_1RV.html#3fa35c2744e687c74f7742990e6aa264" title="Full constructor.">RV</a> (<span class="keyword">const</span> Array&lt;std::string&gt; &amp;in_names, <span class="keyword">const</span> ivec &amp;in_sizes, <span class="keyword">const</span> ivec &amp;in_times) { 
     110<a name="l00110"></a>00110                         init (in_names, in_sizes, in_times); 
     111<a name="l00111"></a>00111                 } 
     112<a name="l00112"></a>00112  
     113<a name="l00114"></a><a class="code" href="classbdm_1_1RV.html#381f5d963bb54efd4e76815dc93d50ce">00114</a>                 <a class="code" href="classbdm_1_1RV.html#381f5d963bb54efd4e76815dc93d50ce" title="Constructor with times=0.">RV</a> (<span class="keyword">const</span> Array&lt;std::string&gt; &amp;in_names, <span class="keyword">const</span> ivec &amp;in_sizes) { 
     114<a name="l00115"></a>00115                         init (in_names, in_sizes, zeros_i (in_names.length())); 
     115<a name="l00116"></a>00116                 } 
    115116<a name="l00117"></a>00117  
    116 <a name="l00120"></a>00120  
    117 <a name="l00122"></a>00122   <span class="keyword">friend</span> std::ostream &amp;<a class="code" href="classbdm_1_1RV.html#cad6f15535d10437f6690cb4492176a8" title="Printing output e.g. for debugging.">operator&lt;&lt; </a>(std::ostream &amp;os, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv); 
    118 <a name="l00123"></a>00123   <span class="keywordtype">int</span> _dsize()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>;} ; 
    119 <a name="l00125"></a>00125   <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#39f9b44752376f07e346579b5ff8cbbd" title="Recount size of the corresponding data vector.">countsize</a>() <span class="keyword">const</span>; 
    120 <a name="l00126"></a>00126   ivec cumsizes() <span class="keyword">const</span>; 
    121 <a name="l00127"></a>00127   <span class="keywordtype">int</span> length()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>;} ; 
    122 <a name="l00128"></a>00128   <span class="keywordtype">int</span> id(<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(at);}; 
    123 <a name="l00129"></a>00129   <span class="keywordtype">int</span> size(<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{<span class="keywordflow">return</span> RV_SIZES(<a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(at));}; 
    124 <a name="l00130"></a>00130   <span class="keywordtype">int</span> time(<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>(at);}; 
    125 <a name="l00131"></a>00131   std::string name(<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{<span class="keywordflow">return</span> RV_NAMES(<a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(at));}; 
    126 <a name="l00132"></a>00132   <span class="keywordtype">void</span> set_time(<span class="keywordtype">int</span> at, <span class="keywordtype">int</span> time0) {<a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>(at) = time0;}; 
     117<a name="l00119"></a><a class="code" href="classbdm_1_1RV.html#cb47d71d82639ec7ddf2635b21aafd00">00119</a>                 <a class="code" href="classbdm_1_1RV.html#cb47d71d82639ec7ddf2635b21aafd00" title="Constructor with sizes=1, times=0.">RV</a> (<span class="keyword">const</span> Array&lt;std::string&gt; &amp;in_names) { 
     118<a name="l00120"></a>00120                         init (in_names, ones_i (in_names.length()), zeros_i (in_names.length())); 
     119<a name="l00121"></a>00121                 } 
     120<a name="l00122"></a>00122  
     121<a name="l00124"></a><a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412">00124</a>                 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a>() : <a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a> (0), <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a> (0), <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (0), <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> (0) {} 
     122<a name="l00125"></a>00125  
     123<a name="l00127"></a>00127                 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> (<span class="keywordtype">string</span> name, <span class="keywordtype">int</span> sz, <span class="keywordtype">int</span> tm = 0); 
     124<a name="l00128"></a>00128  
     125<a name="l00129"></a>00129                 <span class="comment">// compiler-generated copy constructor is used</span> 
     126<a name="l00131"></a>00131 <span class="comment"></span> 
    127127<a name="l00134"></a>00134  
    128 <a name="l00135"></a>00135   <span class="comment">//TODO why not inline and later??</span> 
    129 <a name="l00136"></a>00136  
    130 <a name="l00139"></a>00139  
    131 <a name="l00141"></a>00141   ivec <a class="code" href="classbdm_1_1RV.html#1367055b2608ad9d50d01a2da6cec869" title="Find indices of self in another rv,.">findself</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2) <span class="keyword">const</span>; 
    132 <a name="l00143"></a>00143   <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2) <span class="keyword">const</span>; 
    133 <a name="l00145"></a>00145   <span class="keywordtype">bool</span> <span class="keyword">add</span>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2); 
    134 <a name="l00147"></a>00147   <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#aec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2) <span class="keyword">const</span>; 
    135 <a name="l00149"></a>00149   <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indeces ind.">subselect</a>(<span class="keyword">const</span> ivec &amp;ind) <span class="keyword">const</span>; 
    136 <a name="l00151"></a><a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966">00151</a>   <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indeces ind.">operator()</a>(<span class="keyword">const</span> ivec &amp;ind)<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indeces ind.">subselect</a>(ind);}; 
    137 <a name="l00153"></a><a class="code" href="classbdm_1_1RV.html#452fb5f7ab1eafe17932bf9f458d0415">00153</a>   <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#452fb5f7ab1eafe17932bf9f458d0415" title="Select from data vector starting at di1 to di2.">operator()</a>(<span class="keywordtype">int</span> di1, <span class="keywordtype">int</span> di2)<span class="keyword"> const </span>{ 
    138 <a name="l00154"></a>00154     ivec sz = cumsizes(); 
    139 <a name="l00155"></a>00155     <span class="keywordtype">int</span> i1 = 0; 
    140 <a name="l00156"></a>00156     <span class="keywordflow">while</span> (sz(i1) &lt; di1) i1++; 
    141 <a name="l00157"></a>00157     <span class="keywordtype">int</span> i2 = i1; 
    142 <a name="l00158"></a>00158     <span class="keywordflow">while</span> (sz(i2) &lt; di2) i2++; 
    143 <a name="l00159"></a>00159     <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indeces ind.">subselect</a>(linspace(i1, i2)); 
    144 <a name="l00160"></a>00160   }; 
    145 <a name="l00162"></a>00162   <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#bd77cb0899f7fba1d0e34396137b7f1f" title="Shift time shifted by delta.">t</a>(<span class="keywordtype">int</span> delta); 
     128<a name="l00136"></a>00136                 <span class="keyword">friend</span> std::ostream &amp;<a class="code" href="classbdm_1_1RV.html#cad6f15535d10437f6690cb4492176a8" title="State output, e.g. for debugging.">operator&lt;&lt; </a>(std::ostream &amp;os, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv); 
     129<a name="l00137"></a>00137  
     130<a name="l00138"></a>00138                 <span class="keywordtype">int</span> _dsize()<span class="keyword"> const </span>{ 
     131<a name="l00139"></a>00139                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>; 
     132<a name="l00140"></a>00140                 } 
     133<a name="l00141"></a>00141  
     134<a name="l00143"></a>00143                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#39f9b44752376f07e346579b5ff8cbbd" title="Recount size of the corresponding data vector.">countsize</a>() <span class="keyword">const</span>; 
     135<a name="l00144"></a>00144                 ivec cumsizes() <span class="keyword">const</span>; 
     136<a name="l00145"></a>00145                 <span class="keywordtype">int</span> length()<span class="keyword"> const </span>{ 
     137<a name="l00146"></a>00146                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>; 
     138<a name="l00147"></a>00147                 } 
     139<a name="l00148"></a>00148                 <span class="keywordtype">int</span> id (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{ 
     140<a name="l00149"></a>00149                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (at); 
     141<a name="l00150"></a>00150                 } 
     142<a name="l00151"></a>00151                 <span class="keywordtype">int</span> size (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{ 
     143<a name="l00152"></a>00152                         <span class="keywordflow">return</span> RV_SIZES (<a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (at)); 
     144<a name="l00153"></a>00153                 } 
     145<a name="l00154"></a>00154                 <span class="keywordtype">int</span> time (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{ 
     146<a name="l00155"></a>00155                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> (at); 
     147<a name="l00156"></a>00156                 } 
     148<a name="l00157"></a>00157                 std::string name (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{ 
     149<a name="l00158"></a>00158                         <span class="keywordflow">return</span> RV_NAMES (<a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (at)); 
     150<a name="l00159"></a>00159                 } 
     151<a name="l00160"></a>00160                 <span class="keywordtype">void</span> set_time (<span class="keywordtype">int</span> at, <span class="keywordtype">int</span> time0) { 
     152<a name="l00161"></a>00161                         <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> (at) = time0; 
     153<a name="l00162"></a>00162                 } 
    146154<a name="l00164"></a>00164  
    147155<a name="l00167"></a>00167  
    148 <a name="l00169"></a>00169   <a class="code" href="classbdm_1_1str.html" title="Structure of RV (used internally), i.e. expanded RVs - TODO tak proc je ve verejnem...">str</a> <a class="code" href="classbdm_1_1RV.html#8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes TODO to_string..">tostr</a>() <span class="keyword">const</span>; 
    149 <a name="l00172"></a>00172   ivec <a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;crv) <span class="keyword">const</span>; 
    150 <a name="l00175"></a>00175   <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2, ivec &amp;selfi, ivec &amp;rv2i) <span class="keyword">const</span>; 
    151 <a name="l00177"></a><a class="code" href="classbdm_1_1RV.html#9a5c5aeeaf39299d07763377b05a8241">00177</a>   <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> min(<a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>);}; 
    152 <a name="l00179"></a>00179  
    153 <a name="l00180"></a>00180   <span class="comment">// TODO aktualizovat dle soucasneho UI</span> 
    154 <a name="l00195"></a>00195 <span class="comment"></span>  <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#6564bdd36b6845a51446a192d33e1194" title="UI for class RV (description of data vectors).">from_setting</a>(<span class="keyword">const</span> Setting &amp;<span class="keyword">set</span>); 
    155 <a name="l00196"></a>00196  
    156 <a name="l00197"></a>00197   <span class="comment">// TODO dodelat void to_setting( Setting &amp;set ) const;</span> 
    157 <a name="l00198"></a>00198 }; 
    158 <a name="l00199"></a>00199 <a class="code" href="user__info_8h.html#4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a>(RV); 
    159 <a name="l00200"></a>00200  
    160 <a name="l00202"></a>00202 RV concat(<span class="keyword">const</span> RV &amp;rv1, <span class="keyword">const</span> RV &amp;rv2); 
    161 <a name="l00203"></a>00203  
    162 <a name="l00205"></a>00205 <span class="keyword">extern</span> RV RV0; 
    163 <a name="l00206"></a>00206  
    164 <a name="l00208"></a>00208  
    165 <a name="l00209"></a><a class="code" href="classbdm_1_1fnc.html">00209</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1fnc.html" title="Class representing function  of variable  represented by rv.">fnc</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> 
    166 <a name="l00210"></a>00210 { 
    167 <a name="l00211"></a>00211 <span class="keyword">protected</span>: 
    168 <a name="l00213"></a><a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62">00213</a>   <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>; 
    169 <a name="l00214"></a>00214 <span class="keyword">public</span>: 
    170 <a name="l00216"></a><a class="code" href="classbdm_1_1fnc.html#65e9fb11f6cc7884018d8f229bcabbb7">00216</a>   <a class="code" href="classbdm_1_1fnc.html#65e9fb11f6cc7884018d8f229bcabbb7" title="default constructor">fnc</a>() {}; 
    171 <a name="l00218"></a><a class="code" href="classbdm_1_1fnc.html#6277b11d7fffc7ef8a2fa3e84ae5bad4">00218</a>   <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1fnc.html#6277b11d7fffc7ef8a2fa3e84ae5bad4" title="function evaluates numerical value of  at  cond ">eval</a>(<span class="keyword">const</span> vec &amp;cond) { 
    172 <a name="l00219"></a>00219     <span class="keywordflow">return</span> vec(0); 
    173 <a name="l00220"></a>00220   }; 
    174 <a name="l00221"></a>00221  
    175 <a name="l00223"></a><a class="code" href="classbdm_1_1fnc.html#0786e40fade2663a70d654c1dda5d73e">00223</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1fnc.html#0786e40fade2663a70d654c1dda5d73e" title="function substitutes given value into an appropriate position">condition</a>(<span class="keyword">const</span> vec &amp;val) {}; 
    176 <a name="l00224"></a>00224  
    177 <a name="l00226"></a><a class="code" href="classbdm_1_1fnc.html#083832294da9d1e40804158b979c4341">00226</a>   <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#083832294da9d1e40804158b979c4341" title="access function">dimension</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;} 
     156<a name="l00169"></a>00169                 ivec <a class="code" href="classbdm_1_1RV.html#1367055b2608ad9d50d01a2da6cec869" title="Find indices of self in another rv,.">findself</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2) <span class="keyword">const</span>; 
     157<a name="l00171"></a>00171                 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2) <span class="keyword">const</span>; 
     158<a name="l00173"></a>00173                 <span class="keywordtype">bool</span> <span class="keyword">add</span> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2); 
     159<a name="l00175"></a>00175                 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#aec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2) <span class="keyword">const</span>; 
     160<a name="l00177"></a>00177                 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> (<span class="keyword">const</span> ivec &amp;ind) <span class="keyword">const</span>; 
     161<a name="l00178"></a>00178  
     162<a name="l00180"></a><a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966">00180</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>(<span class="keyword">const</span> ivec &amp;ind)<span class="keyword"> const </span>{ 
     163<a name="l00181"></a>00181                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> (ind); 
     164<a name="l00182"></a>00182                 } 
     165<a name="l00183"></a>00183  
     166<a name="l00185"></a>00185                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>(<span class="keywordtype">int</span> di1, <span class="keywordtype">int</span> di2) <span class="keyword">const</span>; 
     167<a name="l00186"></a>00186  
     168<a name="l00188"></a>00188                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#bd77cb0899f7fba1d0e34396137b7f1f" title="Shift time by delta.">t</a> (<span class="keywordtype">int</span> delta); 
     169<a name="l00190"></a>00190  
     170<a name="l00193"></a>00193  
     171<a name="l00195"></a>00195                 <a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> <a class="code" href="classbdm_1_1RV.html#8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes">tostr</a>() <span class="keyword">const</span>; 
     172<a name="l00198"></a>00198                 ivec <a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;crv) <span class="keyword">const</span>; 
     173<a name="l00201"></a>00201                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2, ivec &amp;selfi, ivec &amp;rv2i) <span class="keyword">const</span>; 
     174<a name="l00203"></a><a class="code" href="classbdm_1_1RV.html#9a5c5aeeaf39299d07763377b05a8241">00203</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>()<span class="keyword"> const </span>{ 
     175<a name="l00204"></a>00204                         <span class="keywordflow">return</span> min (<a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>); 
     176<a name="l00205"></a>00205                 } 
     177<a name="l00207"></a>00207  
     178<a name="l00222"></a>00222                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#6564bdd36b6845a51446a192d33e1194" title="UI for class RV (description of data vectors).">from_setting</a> (<span class="keyword">const</span> Setting &amp;<span class="keyword">set</span>); 
     179<a name="l00223"></a>00223  
     180<a name="l00224"></a>00224                 <span class="comment">// TODO dodelat void to_setting( Setting &amp;set ) const;</span> 
     181<a name="l00226"></a>00226 <span class="comment"></span>                <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#ab92b361335a644df654cf7cf7e5ffc0" title="Invalidate all named RVs. Use before initializing any RV instances, with care...">clear_all</a>(); 
    178182<a name="l00227"></a>00227 }; 
    179 <a name="l00228"></a>00228  
    180 <a name="l00229"></a>00229 <span class="keyword">class </span>mpdf; 
     183<a name="l00228"></a>00228 <a class="code" href="user__info_8h.html#4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> (RV); 
     184<a name="l00229"></a>00229 SHAREDPTR (RV); 
    181185<a name="l00230"></a>00230  
    182 <a name="l00232"></a>00232  
    183 <a name="l00233"></a><a class="code" href="classbdm_1_1epdf.html">00233</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> 
    184 <a name="l00234"></a>00234 { 
    185 <a name="l00235"></a>00235 <span class="keyword">protected</span>: 
    186 <a name="l00237"></a><a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce">00237</a>   <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>; 
    187 <a name="l00239"></a><a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8">00239</a>   <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>; 
    188 <a name="l00240"></a>00240  
    189 <a name="l00241"></a>00241 <span class="keyword">public</span>: 
    190 <a name="l00253"></a>00253   <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>() : <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>(0), <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>() {}; 
    191 <a name="l00254"></a>00254   <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &amp;e) : <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>(e.<a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>), <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>(e.<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>) {}; 
    192 <a name="l00255"></a>00255   epdf(<span class="keyword">const</span> RV &amp;rv0) {<a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a>(rv0);}; 
    193 <a name="l00256"></a>00256   <span class="keywordtype">void</span> set_parameters(<span class="keywordtype">int</span> dim0) {<a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> = dim0;} 
    194 <a name="l00258"></a>00258  
    195 <a name="l00261"></a>00261  
    196 <a name="l00263"></a><a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b">00263</a>   <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample,  from density .">sample</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"not implemneted"</span>); <span class="keywordflow">return</span> vec(0);}; 
    197 <a name="l00265"></a>00265   <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#b4cf45fd83cc7573ede9fe1215256058" title="Returns N samples,  from density .">sample_m</a>(<span class="keywordtype">int</span> N) <span class="keyword">const</span>; 
    198 <a name="l00267"></a><a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249">00267</a>   <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val.">evallog</a>(<span class="keyword">const</span> vec &amp;val)<span class="keyword"> const </span>{it_error(<span class="stringliteral">"not implemneted"</span>); <span class="keywordflow">return</span> 0.0;}; 
    199 <a name="l00269"></a><a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62">00269</a>   <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62" title="Compute log-probability of multiple values argument val.">evallog_m</a>(<span class="keyword">const</span> mat &amp;Val)<span class="keyword"> const </span>{ 
    200 <a name="l00270"></a>00270           vec x(Val.cols()); 
    201 <a name="l00271"></a>00271           <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; Val.cols(); i++) {x(i) = <a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val.">evallog</a>(Val.get_col(i)) ;} 
    202 <a name="l00272"></a>00272           <span class="keywordflow">return</span> x; 
    203 <a name="l00273"></a>00273   } 
    204 <a name="l00275"></a><a class="code" href="classbdm_1_1epdf.html#512dbf057299e871fbc61ed55acb5888">00275</a>   <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#512dbf057299e871fbc61ed55acb5888" title="Compute log-probability of multiple values argument val.">evallog_m</a>(<span class="keyword">const</span> Array&lt;vec&gt; &amp;Avec)<span class="keyword"> const </span>{ 
    205 <a name="l00276"></a>00276           vec x(Avec.size()); 
    206 <a name="l00277"></a>00277           <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; Avec.size(); i++) {x(i) = <a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val.">evallog</a>(Avec(i)) ;} 
    207 <a name="l00278"></a>00278           <span class="keywordflow">return</span> x; 
    208 <a name="l00279"></a>00279   } 
    209 <a name="l00281"></a><a class="code" href="classbdm_1_1epdf.html#e584eac5579c1b6384947ecf66166c77">00281</a>   <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>* <a class="code" href="classbdm_1_1epdf.html#e584eac5579c1b6384947ecf66166c77" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>)<span class="keyword"> const  </span>{it_warning(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> NULL;} 
    210 <a name="l00282"></a>00282  
    211 <a name="l00284"></a><a class="code" href="classbdm_1_1epdf.html#3fb2ece54f720b62ad325e61214fa0a1">00284</a>   <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1epdf.html#3fb2ece54f720b62ad325e61214fa0a1" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>)<span class="keyword"> const </span>{it_warning(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> NULL;} 
    212 <a name="l00285"></a>00285  
    213 <a name="l00287"></a><a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75">00287</a>   <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"not implemneted"</span>); <span class="keywordflow">return</span> vec(0);}; 
    214 <a name="l00288"></a>00288  
    215 <a name="l00290"></a><a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c">00290</a>   <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"not implemneted"</span>); <span class="keywordflow">return</span> vec(0);}; 
    216 <a name="l00292"></a><a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539">00292</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a>(vec &amp;lb, vec &amp;ub, <span class="keywordtype">double</span> percentage = 0.95)<span class="keyword"> const </span>{ 
    217 <a name="l00293"></a>00293     vec mea = <a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>(); 
    218 <a name="l00294"></a>00294     vec std = sqrt(<a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()); 
    219 <a name="l00295"></a>00295     lb = mea - 2 * std; 
    220 <a name="l00296"></a>00296     ub = mea + 2 * std; 
    221 <a name="l00297"></a>00297   }; 
    222 <a name="l00299"></a>00299  
    223 <a name="l00305"></a>00305  
    224 <a name="l00307"></a><a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff">00307</a>   <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv0) {<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> = rv0; }   <span class="comment">//it_assert_debug(isnamed(),""); };</span> 
    225 <a name="l00309"></a><a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9">00309</a> <span class="comment"></span>  <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>()<span class="keyword"> const </span>{<span class="keywordtype">bool</span> b = (<a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> == <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>()); <span class="keywordflow">return</span> b;} 
    226 <a name="l00311"></a><a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21">00311</a>   <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>()<span class="keyword"> const </span>{it_assert_debug(<a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>(), <span class="stringliteral">""</span>); <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;} 
     186<a name="l00232"></a>00232 RV concat (<span class="keyword">const</span> RV &amp;rv1, <span class="keyword">const</span> RV &amp;rv2); 
     187<a name="l00233"></a>00233  
     188<a name="l00235"></a>00235 <span class="keyword">extern</span> RV RV0; 
     189<a name="l00236"></a>00236  
     190<a name="l00238"></a>00238  
     191<a name="l00239"></a><a class="code" href="classbdm_1_1fnc.html">00239</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1fnc.html" title="Class representing function  of variable  represented by rv.">fnc</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> 
     192<a name="l00240"></a>00240 { 
     193<a name="l00241"></a>00241         <span class="keyword">protected</span>: 
     194<a name="l00243"></a><a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62">00243</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>; 
     195<a name="l00244"></a>00244         <span class="keyword">public</span>: 
     196<a name="l00246"></a><a class="code" href="classbdm_1_1fnc.html#65e9fb11f6cc7884018d8f229bcabbb7">00246</a>                 <a class="code" href="classbdm_1_1fnc.html#65e9fb11f6cc7884018d8f229bcabbb7" title="default constructor">fnc</a>() {}; 
     197<a name="l00248"></a><a class="code" href="classbdm_1_1fnc.html#6277b11d7fffc7ef8a2fa3e84ae5bad4">00248</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1fnc.html#6277b11d7fffc7ef8a2fa3e84ae5bad4" title="function evaluates numerical value of  at  cond ">eval</a> (<span class="keyword">const</span> vec &amp;cond) { 
     198<a name="l00249"></a>00249                         <span class="keywordflow">return</span> vec (0); 
     199<a name="l00250"></a>00250                 }; 
     200<a name="l00251"></a>00251  
     201<a name="l00253"></a><a class="code" href="classbdm_1_1fnc.html#0786e40fade2663a70d654c1dda5d73e">00253</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1fnc.html#0786e40fade2663a70d654c1dda5d73e" title="function substitutes given value into an appropriate position">condition</a> (<span class="keyword">const</span> vec &amp;val) {}; 
     202<a name="l00254"></a>00254  
     203<a name="l00256"></a><a class="code" href="classbdm_1_1fnc.html#083832294da9d1e40804158b979c4341">00256</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#083832294da9d1e40804158b979c4341" title="access function">dimension</a>()<span class="keyword"> const </span>{ 
     204<a name="l00257"></a>00257                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1fnc.html#52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>; 
     205<a name="l00258"></a>00258                 } 
     206<a name="l00259"></a>00259 }; 
     207<a name="l00260"></a>00260  
     208<a name="l00261"></a>00261 <span class="keyword">class </span>mpdf; 
     209<a name="l00262"></a>00262  
     210<a name="l00264"></a>00264  
     211<a name="l00265"></a><a class="code" href="classbdm_1_1epdf.html">00265</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> 
     212<a name="l00266"></a>00266 { 
     213<a name="l00267"></a>00267         <span class="keyword">protected</span>: 
     214<a name="l00269"></a><a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce">00269</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>; 
     215<a name="l00271"></a><a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8">00271</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>; 
     216<a name="l00272"></a>00272  
     217<a name="l00273"></a>00273         <span class="keyword">public</span>: 
     218<a name="l00285"></a>00285                 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>() : <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> (0), <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>() {}; 
     219<a name="l00286"></a>00286                 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &amp;e) : <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> (e.<a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>), <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> (e.<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>) {}; 
     220<a name="l00287"></a>00287                 epdf (<span class="keyword">const</span> RV &amp;rv0) : <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> (rv0._dsize()) { 
     221<a name="l00288"></a>00288                         <a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> (rv0); 
     222<a name="l00289"></a>00289                 }; 
     223<a name="l00290"></a>00290                 <span class="keywordtype">void</span> set_parameters (<span class="keywordtype">int</span> dim0) { 
     224<a name="l00291"></a>00291                         <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> = dim0; 
     225<a name="l00292"></a>00292                 } 
     226<a name="l00294"></a>00294  
     227<a name="l00297"></a>00297  
     228<a name="l00299"></a><a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b">00299</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample,  from density .">sample</a>()<span class="keyword"> const </span>{ 
     229<a name="l00300"></a>00300                         it_error (<span class="stringliteral">"not implemented"</span>); 
     230<a name="l00301"></a>00301                         <span class="keywordflow">return</span> vec (0); 
     231<a name="l00302"></a>00302                 } 
     232<a name="l00303"></a>00303  
     233<a name="l00305"></a>00305                 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#b4cf45fd83cc7573ede9fe1215256058" title="Returns N samples,  from density .">sample_m</a> (<span class="keywordtype">int</span> N) <span class="keyword">const</span>; 
     234<a name="l00306"></a>00306  
     235<a name="l00309"></a><a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249">00309</a>                 <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249">evallog</a> (<span class="keyword">const</span> vec &amp;val)<span class="keyword"> const </span>{ 
     236<a name="l00310"></a>00310                         it_error (<span class="stringliteral">"not implemented"</span>); 
     237<a name="l00311"></a>00311                         <span class="keywordflow">return</span> 0.0; 
     238<a name="l00312"></a>00312                 } 
    227239<a name="l00313"></a>00313  
     240<a name="l00315"></a>00315                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#d08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> (<span class="keyword">const</span> mat &amp;Val) <span class="keyword">const</span>; 
    228241<a name="l00316"></a>00316  
    229 <a name="l00318"></a><a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c">00318</a>   <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;} 
    230 <a name="l00326"></a><a class="code" href="classbdm_1_1epdf.html#fa9efc98a065b31c630fe18cc418f725">00326</a>   <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#fa9efc98a065b31c630fe18cc418f725">from_setting</a>(<span class="keyword">const</span> Setting &amp;<span class="keyword">set</span>){ 
    231 <a name="l00327"></a>00327           <span class="keywordflow">if</span> (<span class="keyword">set</span>.exists(<span class="stringliteral">"rv"</span>)){ 
    232 <a name="l00328"></a>00328                   <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>* r = UI::build&lt;RV&gt;(<span class="keyword">set</span>,<span class="stringliteral">"rv"</span>); 
    233 <a name="l00329"></a>00329                   <a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a>(*r);  
    234 <a name="l00330"></a>00330                   <span class="keyword">delete</span> r; 
    235 <a name="l00331"></a>00331           } 
    236 <a name="l00332"></a>00332   } 
    237 <a name="l00333"></a>00333  
    238 <a name="l00334"></a>00334 }; 
    239 <a name="l00335"></a>00335  
    240 <a name="l00336"></a>00336  
    241 <a name="l00338"></a>00338 <span class="comment">//TODO Samplecond can be generalized</span> 
    242 <a name="l00339"></a>00339  
    243 <a name="l00340"></a><a class="code" href="classbdm_1_1mpdf.html">00340</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> 
    244 <a name="l00341"></a>00341 { 
    245 <a name="l00342"></a>00342 <span class="keyword">protected</span>: 
    246 <a name="l00344"></a><a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6">00344</a>   <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>; 
    247 <a name="l00346"></a><a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288">00346</a>   <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>; 
    248 <a name="l00348"></a><a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0">00348</a>   <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>; 
    249 <a name="l00349"></a>00349 <span class="keyword">public</span>: 
    250 <a name="l00352"></a>00352  
    251 <a name="l00353"></a>00353   <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>() : <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>(0), <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>() {}; 
    252 <a name="l00355"></a><a class="code" href="classbdm_1_1mpdf.html#7089fcbd918f201fdf4256119e31f173">00355</a>   <a class="code" href="classbdm_1_1mpdf.html#7089fcbd918f201fdf4256119e31f173" title="copy constructor does not set pointer ep - has to be done in offsprings!">mpdf</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> &amp;m) : <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>(m.<a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>), <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>(m.<a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>) {}; 
    253 <a name="l00357"></a>00357  
    254 <a name="l00360"></a>00360  
    255 <a name="l00362"></a><a class="code" href="classbdm_1_1mpdf.html#f0c1db6fcbb3aae2dd6123884457a367">00362</a>   <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#f0c1db6fcbb3aae2dd6123884457a367" title="Returns a sample from the density conditioned on cond, .">samplecond</a>(<span class="keyword">const</span> vec &amp;cond) { 
    256 <a name="l00363"></a>00363     this-&gt;<a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a>(cond); 
    257 <a name="l00364"></a>00364     vec temp = <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample,  from density .">sample</a>(); 
    258 <a name="l00365"></a>00365     <span class="keywordflow">return</span> temp; 
    259 <a name="l00366"></a>00366   }; 
    260 <a name="l00368"></a><a class="code" href="classbdm_1_1mpdf.html#afe4185b26baeb03688202e254d3b005">00368</a>   <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf.html#afe4185b26baeb03688202e254d3b005" title="Returns.">samplecond_m</a>(<span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N) { 
    261 <a name="l00369"></a>00369     this-&gt;<a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a>(cond); 
    262 <a name="l00370"></a>00370     mat temp(<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>(), N); 
    263 <a name="l00371"></a>00371     vec smp(<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>()); 
    264 <a name="l00372"></a>00372     <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; N; i++) {smp = <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample,  from density .">sample</a>() ; temp.set_col(i, smp);} 
    265 <a name="l00373"></a>00373     <span class="keywordflow">return</span> temp; 
    266 <a name="l00374"></a>00374   }; 
    267 <a name="l00376"></a><a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530">00376</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a>(<span class="keyword">const</span> vec &amp;cond) {it_error(<span class="stringliteral">"Not implemented"</span>);}; 
    268 <a name="l00377"></a>00377  
    269 <a name="l00379"></a><a class="code" href="classbdm_1_1mpdf.html#6336a8a72462e2a56a3989a220f18b1b">00379</a>   <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf.html#6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a>(<span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;cond) { 
    270 <a name="l00380"></a>00380     <span class="keywordtype">double</span> tmp; 
    271 <a name="l00381"></a>00381     this-&gt;<a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a>(cond); 
    272 <a name="l00382"></a>00382     tmp = <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val.">evallog</a>(dt); 
    273 <a name="l00383"></a>00383     it_assert_debug(std::isfinite(tmp), <span class="stringliteral">"Infinite value"</span>); 
    274 <a name="l00384"></a>00384     <span class="keywordflow">return</span> tmp; 
    275 <a name="l00385"></a>00385   }; 
    276 <a name="l00386"></a>00386  
    277 <a name="l00388"></a><a class="code" href="classbdm_1_1mpdf.html#0b0ed1ed663071bb7cf4a1349eb94fcb">00388</a>   <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#0b0ed1ed663071bb7cf4a1349eb94fcb" title="Matrix version of evallogcond.">evallogcond_m</a>(<span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond) {this-&gt;<a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a>(cond); <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62" title="Compute log-probability of multiple values argument val.">evallog_m</a>(Dt);}; 
    278 <a name="l00390"></a><a class="code" href="classbdm_1_1mpdf.html#2a0d03756f59924fd038980ee60bd904">00390</a>   <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#2a0d03756f59924fd038980ee60bd904" title="Array&amp;lt;vec&amp;gt; version of evallogcond.">evallogcond_m</a>(<span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond) {this-&gt;<a class="code" href="classbdm_1_1mpdf.html#db94784a9aacf74c65c5a014f6743530" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a>(cond); <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62" title="Compute log-probability of multiple values argument val.">evallog_m</a>(Dt);}; 
     242<a name="l00318"></a>00318                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#d08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> (<span class="keyword">const</span> Array&lt;vec&gt; &amp;Avec) <span class="keyword">const</span>; 
     243<a name="l00319"></a>00319  
     244<a name="l00321"></a>00321                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;mpdf&gt;</a> <a class="code" href="classbdm_1_1epdf.html#1499d35b79bce0cfa64fc5cafb9c03b2" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>) <span class="keyword">const</span>; 
     245<a name="l00322"></a>00322  
     246<a name="l00324"></a>00324                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> <a class="code" href="classbdm_1_1epdf.html#a84b05f5293cab2aeb4e07faffa60906" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>) <span class="keyword">const</span>; 
     247<a name="l00325"></a>00325  
     248<a name="l00327"></a><a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75">00327</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>()<span class="keyword"> const </span>{ 
     249<a name="l00328"></a>00328                         it_error (<span class="stringliteral">"not implemneted"</span>); 
     250<a name="l00329"></a>00329                         <span class="keywordflow">return</span> vec (0); 
     251<a name="l00330"></a>00330                 }; 
     252<a name="l00331"></a>00331  
     253<a name="l00333"></a><a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c">00333</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()<span class="keyword"> const </span>{ 
     254<a name="l00334"></a>00334                         it_error (<span class="stringliteral">"not implemneted"</span>); 
     255<a name="l00335"></a>00335                         <span class="keywordflow">return</span> vec (0); 
     256<a name="l00336"></a>00336                 }; 
     257<a name="l00338"></a><a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539">00338</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> (vec &amp;lb, vec &amp;ub, <span class="keywordtype">double</span> percentage = 0.95)<span class="keyword"> const </span>{ 
     258<a name="l00339"></a>00339                         vec mea = <a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>(); 
     259<a name="l00340"></a>00340                         vec std = sqrt (<a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()); 
     260<a name="l00341"></a>00341                         lb = mea - 2 * std; 
     261<a name="l00342"></a>00342                         ub = mea + 2 * std; 
     262<a name="l00343"></a>00343                 }; 
     263<a name="l00345"></a>00345  
     264<a name="l00351"></a>00351  
     265<a name="l00353"></a><a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff">00353</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv0) { 
     266<a name="l00354"></a>00354                         <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> = rv0; 
     267<a name="l00355"></a>00355                 }   <span class="comment">//it_assert_debug(isnamed(),""); };</span> 
     268<a name="l00357"></a><a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9">00357</a> <span class="comment"></span>                <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>()<span class="keyword"> const </span>{ 
     269<a name="l00358"></a>00358                         <span class="keywordtype">bool</span> b = (<a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> == <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>()); 
     270<a name="l00359"></a>00359                         <span class="keywordflow">return</span> b; 
     271<a name="l00360"></a>00360                 } 
     272<a name="l00362"></a><a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21">00362</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>()<span class="keyword"> const </span>{ 
     273<a name="l00363"></a>00363                         it_assert_debug (<a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>(), <span class="stringliteral">""</span>); 
     274<a name="l00364"></a>00364                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>; 
     275<a name="l00365"></a>00365                 } 
     276<a name="l00367"></a>00367  
     277<a name="l00370"></a>00370  
     278<a name="l00372"></a><a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c">00372</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>()<span class="keyword"> const </span>{ 
     279<a name="l00373"></a>00373                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>; 
     280<a name="l00374"></a>00374                 } 
     281<a name="l00382"></a><a class="code" href="classbdm_1_1epdf.html#fa9efc98a065b31c630fe18cc418f725">00382</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#fa9efc98a065b31c630fe18cc418f725">from_setting</a> (<span class="keyword">const</span> Setting &amp;<span class="keyword">set</span>) { 
     282<a name="l00383"></a>00383                         <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1:shared_ptr spec.">shared_ptr&lt;RV&gt;</a> r = UI::build&lt;RV&gt; ( <span class="keyword">set</span>, <span class="stringliteral">"rv"</span>, UI::optional ); 
     283<a name="l00384"></a>00384                         <span class="keywordflow">if</span> (r) { 
     284<a name="l00385"></a>00385                                 <a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> (*r); 
     285<a name="l00386"></a>00386                         } 
     286<a name="l00387"></a>00387                 } 
     287<a name="l00388"></a>00388  
     288<a name="l00389"></a>00389 }; 
     289<a name="l00390"></a>00390 SHAREDPTR(epdf); 
    279290<a name="l00391"></a>00391  
    280 <a name="l00394"></a>00394  
    281 <a name="l00395"></a>00395   <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> _rv() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;<a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();} 
    282 <a name="l00396"></a>00396   RV _rvc() {it_assert_debug(isnamed(), <span class="stringliteral">""</span>); <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;} 
    283 <a name="l00397"></a>00397   <span class="keywordtype">int</span> dimension() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;dimension();} 
    284 <a name="l00398"></a>00398   <span class="keywordtype">int</span> dimensionc() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;} 
    285 <a name="l00399"></a>00399   epdf&amp; _epdf() {<span class="keywordflow">return</span> *<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>;} 
    286 <a name="l00400"></a>00400   epdf* _e() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>;} 
    287 <a name="l00409"></a><a class="code" href="classbdm_1_1mpdf.html#30a0bceb948e287d497c578e371b1667">00409</a>   <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#30a0bceb948e287d497c578e371b1667">from_setting</a>(<span class="keyword">const</span> Setting &amp;<span class="keyword">set</span>){ 
    288 <a name="l00410"></a>00410           <span class="keywordflow">if</span> (<span class="keyword">set</span>.exists(<span class="stringliteral">"rv"</span>)){ 
    289 <a name="l00411"></a>00411                   <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>* r = UI::build&lt;RV&gt;(<span class="keyword">set</span>,<span class="stringliteral">"rv"</span>); 
    290 <a name="l00412"></a>00412                   set_rv(*r);  
    291 <a name="l00413"></a>00413                   <span class="keyword">delete</span> r; 
    292 <a name="l00414"></a>00414           } 
    293 <a name="l00415"></a>00415           <span class="keywordflow">if</span> (<span class="keyword">set</span>.exists(<span class="stringliteral">"rvc"</span>)){ 
    294 <a name="l00416"></a>00416                   <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>* r = UI::build&lt;RV&gt;(<span class="keyword">set</span>,<span class="stringliteral">"rvc"</span>); 
    295 <a name="l00417"></a>00417                   set_rvc(*r);  
    296 <a name="l00418"></a>00418                   <span class="keyword">delete</span> r; 
    297 <a name="l00419"></a>00419           } 
    298 <a name="l00420"></a>00420   } 
     291<a name="l00393"></a><a class="code" href="classbdm_1_1mpdf.html">00393</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> 
     292<a name="l00394"></a>00394 { 
     293<a name="l00395"></a>00395         <span class="keyword">protected</span>: 
     294<a name="l00397"></a><a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6">00397</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>; 
     295<a name="l00399"></a><a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288">00399</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>; 
     296<a name="l00400"></a>00400         <span class="keyword">private</span>: 
     297<a name="l00402"></a>00402                 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* ep; 
     298<a name="l00403"></a>00403  
     299<a name="l00404"></a>00404         <span class="keyword">protected</span>: 
     300<a name="l00406"></a><a class="code" href="classbdm_1_1mpdf.html#147afacb393324bb3f9a7a89e33f835e">00406</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> (<a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &amp;iepdf) { 
     301<a name="l00407"></a>00407                         ep = &amp;iepdf; 
     302<a name="l00408"></a>00408                 } 
     303<a name="l00410"></a><a class="code" href="classbdm_1_1mpdf.html#7555b377f8b5895c9b759c9628ee3e20">00410</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#7555b377f8b5895c9b759c9628ee3e20" title="set internal pointer ep to point to given iepdf ">set_ep</a> (<a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> *iepdfp) { 
     304<a name="l00411"></a>00411                         ep = iepdfp; 
     305<a name="l00412"></a>00412                 } 
     306<a name="l00413"></a>00413  
     307<a name="l00414"></a>00414         <span class="keyword">public</span>: 
     308<a name="l00417"></a>00417  
     309<a name="l00418"></a>00418                 <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>() : <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> (0), <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>(), ep (NULL) { } 
     310<a name="l00419"></a>00419  
     311<a name="l00420"></a>00420                 mpdf (<span class="keyword">const</span> mpdf &amp;m) : <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> (m.<a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>), <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> (m.<a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>), ep (m.ep) { } 
    299312<a name="l00422"></a>00422  
    300 <a name="l00425"></a>00425   <span class="keywordtype">void</span> set_rvc(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc0) {<a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> = rvc0;} 
    301 <a name="l00426"></a>00426   <span class="keywordtype">void</span> set_rv(<span class="keyword">const</span> RV &amp;rv0) {<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;set_rv(rv0);} 
    302 <a name="l00427"></a>00427   <span class="keywordtype">bool</span> isnamed() {<span class="keywordflow">return</span> (<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>-&gt;isnamed()) &amp;&amp; (<a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> == <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>._dsize());} 
    303 <a name="l00429"></a>00429 }; 
    304 <a name="l00430"></a>00430  
    305 <a name="l00456"></a><a class="code" href="classbdm_1_1datalink.html">00456</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> 
    306 <a name="l00457"></a>00457 { 
    307 <a name="l00458"></a>00458 <span class="keyword">protected</span>: 
    308 <a name="l00460"></a><a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c">00460</a>   <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>; 
    309 <a name="l00462"></a><a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045">00462</a>   <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a>; 
    310 <a name="l00464"></a><a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb">00464</a>   ivec <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>; 
    311 <a name="l00465"></a>00465 <span class="keyword">public</span>: 
    312 <a name="l00467"></a><a class="code" href="classbdm_1_1datalink.html#b8b5d5074fc1310a37c3713d58b900e2">00467</a>   <a class="code" href="classbdm_1_1datalink.html#b8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a>() {}; 
    313 <a name="l00468"></a>00468   <a class="code" href="classbdm_1_1datalink.html#b8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up) {<a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a>(rv, rv_up);}; 
    314 <a name="l00470"></a><a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67">00470</a>   <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up) { 
    315 <a name="l00471"></a>00471     <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = rv.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(); 
    316 <a name="l00472"></a>00472     <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> = rv_up.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(); 
    317 <a name="l00473"></a>00473     <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a> = (rv.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(rv_up)); 
    318 <a name="l00474"></a>00474  
    319 <a name="l00475"></a>00475     it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>.length() == <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>, <span class="stringliteral">"rv is not fully in rv_up"</span>); 
    320 <a name="l00476"></a>00476   } 
    321 <a name="l00478"></a><a class="code" href="classbdm_1_1datalink.html#724486a37002e7a3a73366c3af9b82ad">00478</a>   <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#724486a37002e7a3a73366c3af9b82ad" title="set connection using indeces">set_connection</a>(<span class="keywordtype">int</span> ds, <span class="keywordtype">int</span> us, <span class="keyword">const</span> ivec &amp;upind) { 
    322 <a name="l00479"></a>00479     <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = ds; 
    323 <a name="l00480"></a>00480     <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> = us; 
    324 <a name="l00481"></a>00481     <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a> = upind; 
    325 <a name="l00482"></a>00482  
    326 <a name="l00483"></a>00483     it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>.length() == <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>, <span class="stringliteral">"rv is not fully in rv_up"</span>); 
    327 <a name="l00484"></a>00484   } 
    328 <a name="l00486"></a><a class="code" href="classbdm_1_1datalink.html#5b5368c3899eed2f670d09142c2548e5">00486</a>   vec <a class="code" href="classbdm_1_1datalink.html#5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &amp;quot;Up&amp;quot;.">pushdown</a>(<span class="keyword">const</span> vec &amp;val_up) { 
    329 <a name="l00487"></a>00487     it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>); 
    330 <a name="l00488"></a>00488     <span class="keywordflow">return</span> get_vec(val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>); 
    331 <a name="l00489"></a>00489   } 
    332 <a name="l00491"></a><a class="code" href="classbdm_1_1datalink.html#610e966f2edb1fcd6a5b28267c571793">00491</a>   <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#610e966f2edb1fcd6a5b28267c571793" title="Fill val of &amp;quot;Up&amp;quot; by my pieces.">pushup</a>(vec &amp;val_up, <span class="keyword">const</span> vec &amp;val) { 
    333 <a name="l00492"></a>00492     it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">"Wrong val"</span>); 
    334 <a name="l00493"></a>00493     it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>); 
    335 <a name="l00494"></a>00494     set_subvector(val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>, val); 
    336 <a name="l00495"></a>00495   } 
    337 <a name="l00496"></a>00496 }; 
    338 <a name="l00497"></a>00497  
    339 <a name="l00499"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00499</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> 
    340 <a name="l00500"></a>00500 { 
    341 <a name="l00501"></a>00501 <span class="keyword">protected</span>: 
    342 <a name="l00503"></a><a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9">00503</a>   <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>; 
    343 <a name="l00505"></a><a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783">00505</a>   ivec <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>; 
    344 <a name="l00507"></a><a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc">00507</a>   ivec <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>; 
    345 <a name="l00508"></a>00508  
    346 <a name="l00509"></a>00509 <span class="keyword">public</span>: 
    347 <a name="l00510"></a>00510   <a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a>() {}; 
    348 <a name="l00512"></a><a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0">00512</a>   <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0" title="Constructor.">set_connection</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv,  <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up) { 
    349 <a name="l00513"></a>00513     <a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0" title="Constructor.">datalink::set_connection</a>(rv, rv_up); 
    350 <a name="l00514"></a>00514     <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> =  rvc.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(); 
    351 <a name="l00515"></a>00515     <span class="comment">//establish v2c connection</span> 
    352 <a name="l00516"></a>00516     rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(rv_up, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>); 
    353 <a name="l00517"></a>00517   } 
    354 <a name="l00519"></a><a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703">00519</a>   vec <a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a>(<span class="keyword">const</span> vec &amp;val_up) { 
    355 <a name="l00520"></a>00520     vec tmp(<a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>); 
    356 <a name="l00521"></a>00521     set_subvector(tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>, val_up(<a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>)); 
    357 <a name="l00522"></a>00522     <span class="keywordflow">return</span> tmp; 
    358 <a name="l00523"></a>00523   } 
    359 <a name="l00524"></a>00524   <span class="keywordtype">void</span> pushup_cond(vec &amp;val_up, <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond) { 
    360 <a name="l00525"></a>00525     it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">"Wrong val"</span>); 
    361 <a name="l00526"></a>00526     it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>); 
    362 <a name="l00527"></a>00527     set_subvector(val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indeces of the upper val">v2v_up</a>, val); 
    363 <a name="l00528"></a>00528     set_subvector(val_up, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>, cond); 
    364 <a name="l00529"></a>00529   } 
    365 <a name="l00530"></a>00530 }; 
    366 <a name="l00533"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00533</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="data link between">datalink_m2e</a> 
    367 <a name="l00534"></a>00534 { 
    368 <a name="l00535"></a>00535 <span class="keyword">protected</span>: 
    369 <a name="l00537"></a><a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d">00537</a>   ivec <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a>; 
    370 <a name="l00539"></a><a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5">00539</a>   ivec <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>; 
    371 <a name="l00540"></a>00540 <span class="keyword">public</span>: 
    372 <a name="l00542"></a><a class="code" href="classbdm_1_1datalink__m2m.html#3baed32cb66f0e2f731032cec0a4d287">00542</a>   <a class="code" href="classbdm_1_1datalink__m2m.html#3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {}; 
    373 <a name="l00543"></a>00543   <span class="keywordtype">void</span> set_connection(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc_up) { 
    374 <a name="l00544"></a>00544     <a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0" title="Constructor.">datalink_m2e::set_connection</a>(rv, rvc, rv_up); 
    375 <a name="l00545"></a>00545     <span class="comment">//establish c2c connection</span> 
    376 <a name="l00546"></a>00546     rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a>); 
    377 <a name="l00547"></a>00547     it_assert_debug(<a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>.length() + <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>.length() == <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">"cond is not fully given"</span>); 
    378 <a name="l00548"></a>00548   } 
    379 <a name="l00550"></a><a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90">00550</a>   vec <a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &amp;quot;Up&amp;quot;.">get_cond</a>(<span class="keyword">const</span> vec &amp;val_up, <span class="keyword">const</span> vec &amp;cond_up) { 
    380 <a name="l00551"></a>00551     vec tmp(<a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>); 
    381 <a name="l00552"></a>00552     set_subvector(tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, ideces of the local cond">v2c_lo</a>, val_up(<a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indeces of the upper val">v2c_up</a>)); 
    382 <a name="l00553"></a>00553     set_subvector(tmp, <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indeces of the local cond">c2c_lo</a>, cond_up(<a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indeces of the upper cond">c2c_up</a>)); 
    383 <a name="l00554"></a>00554     <span class="keywordflow">return</span> tmp; 
    384 <a name="l00555"></a>00555   } 
    385 <a name="l00557"></a>00557  
    386 <a name="l00558"></a>00558 }; 
    387 <a name="l00559"></a>00559  
    388 <a name="l00565"></a><a class="code" href="classbdm_1_1logger.html">00565</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> 
    389 <a name="l00566"></a>00566 { 
    390 <a name="l00567"></a>00567 <span class="keyword">protected</span>: 
    391 <a name="l00569"></a><a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f">00569</a>   Array&lt;RV&gt; <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>; 
    392 <a name="l00571"></a><a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02">00571</a>   Array&lt;string&gt; <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>; 
    393 <a name="l00572"></a>00572 <span class="keyword">public</span>: 
    394 <a name="l00574"></a><a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf">00574</a>   <a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a>() : <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>(0), <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>(0) {} 
    395 <a name="l00575"></a>00575  
    396 <a name="l00578"></a><a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">00578</a>   <span class="keyword">virtual</span> <span class="keywordtype">int</span> <span class="keyword">add</span>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keywordtype">string</span> prefix = <span class="stringliteral">""</span>) { 
    397 <a name="l00579"></a>00579     <span class="keywordtype">int</span> id; 
    398 <a name="l00580"></a>00580     <span class="keywordflow">if</span> (rv.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() &gt; 0) { 
    399 <a name="l00581"></a>00581       <span class="keywordtype">id</span> = <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length(); 
    400 <a name="l00582"></a>00582       <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> = concat(<a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix); <span class="comment">// diff</span> 
    401 <a name="l00583"></a>00583       <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length(<span class="keywordtype">id</span> + 1, <span class="keyword">true</span>); 
    402 <a name="l00584"></a>00584       <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>(<span class="keywordtype">id</span>) = rv; 
    403 <a name="l00585"></a>00585     } 
    404 <a name="l00586"></a>00586     <span class="keywordflow">else</span> { <span class="keywordtype">id</span> = -1;} 
    405 <a name="l00587"></a>00587     <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span> 
    406 <a name="l00588"></a>00588   } 
    407 <a name="l00589"></a>00589  
    408 <a name="l00591"></a>00591   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &amp;v) = 0; 
    409 <a name="l00593"></a>00593   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &amp;d) = 0; 
    410 <a name="l00594"></a>00594  
    411 <a name="l00596"></a>00596   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#4f31c03578a7b9b30d8b1f8c338a37e8" title="Shifts storage position for another time step.">step</a>() = 0; 
    412 <a name="l00597"></a>00597  
    413 <a name="l00599"></a><a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d">00599</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {}; 
    414 <a name="l00600"></a>00600  
    415 <a name="l00602"></a><a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc">00602</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {}; 
    416 <a name="l00603"></a>00603  
    417 <a name="l00604"></a>00604 }; 
     313<a name="l00425"></a>00425  
     314<a name="l00427"></a><a class="code" href="classbdm_1_1mpdf.html#f0c1db6fcbb3aae2dd6123884457a367">00427</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#f0c1db6fcbb3aae2dd6123884457a367" title="Returns a sample from the density conditioned on cond, .">samplecond</a> (<span class="keyword">const</span> vec &amp;cond) {it_error (<span class="stringliteral">"Not implemented"</span>);<span class="keywordflow">return</span> vec (0);}; 
     315<a name="l00428"></a>00428  
     316<a name="l00430"></a>00430                 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf.html#6e497d501331057309d2fddf63259d1a" title="Returns.">samplecond_m</a> (<span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N); 
     317<a name="l00431"></a>00431  
     318<a name="l00433"></a><a class="code" href="classbdm_1_1mpdf.html#6336a8a72462e2a56a3989a220f18b1b">00433</a>                 <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf.html#6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> (<span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;cond) {it_error (<span class="stringliteral">"Not implemented"</span>);<span class="keywordflow">return</span> 0.0;} 
     319<a name="l00434"></a>00434  
     320<a name="l00436"></a><a class="code" href="classbdm_1_1mpdf.html#0b0ed1ed663071bb7cf4a1349eb94fcb">00436</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#0b0ed1ed663071bb7cf4a1349eb94fcb" title="Matrix version of evallogcond.">evallogcond_m</a> (<span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond) { 
     321<a name="l00437"></a>00437                         vec v(Dt.cols()); 
     322<a name="l00438"></a>00438                         <span class="keywordflow">for</span>(<span class="keywordtype">int</span> i=0;i&lt;Dt.cols();i++){v(i)= <a class="code" href="classbdm_1_1mpdf.html#6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a>(Dt.get_col(i),cond);} 
     323<a name="l00439"></a>00439                         <span class="keywordflow">return</span> v; 
     324<a name="l00440"></a>00440                 } 
     325<a name="l00441"></a>00441  
     326<a name="l00443"></a><a class="code" href="classbdm_1_1mpdf.html#2a0d03756f59924fd038980ee60bd904">00443</a>                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#2a0d03756f59924fd038980ee60bd904" title="Array&amp;lt;vec&amp;gt; version of evallogcond.">evallogcond_m</a> (<span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond) {it_error (<span class="stringliteral">"Not implemented"</span>);<span class="keywordflow">return</span> vec (0);} 
     327<a name="l00444"></a>00444  
     328<a name="l00447"></a>00447  
     329<a name="l00448"></a>00448                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> _rv()<span class="keyword"> const </span>{ 
     330<a name="l00449"></a>00449                         <span class="keywordflow">return</span> ep-&gt;<a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>(); 
     331<a name="l00450"></a>00450                 } 
     332<a name="l00451"></a>00451                 RV _rvc() { 
     333<a name="l00452"></a>00452                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>; 
     334<a name="l00453"></a>00453                 } 
     335<a name="l00454"></a>00454  
     336<a name="l00455"></a>00455                 <span class="keywordtype">int</span> dimension()<span class="keyword"> const </span>{ 
     337<a name="l00456"></a>00456                         <span class="keywordflow">return</span> ep-&gt;dimension(); 
     338<a name="l00457"></a>00457                 } 
     339<a name="l00458"></a>00458                 <span class="keywordtype">int</span> dimensionc() { 
     340<a name="l00459"></a>00459                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>; 
     341<a name="l00460"></a>00460                 } 
     342<a name="l00461"></a>00461  
     343<a name="l00471"></a>00471                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#30a0bceb948e287d497c578e371b1667">from_setting</a> (<span class="keyword">const</span> Setting &amp;<span class="keyword">set</span>); 
     344<a name="l00473"></a>00473  
     345<a name="l00476"></a>00476                 <span class="keywordtype">void</span> set_rvc (<span class="keyword">const</span> RV &amp;rvc0) { 
     346<a name="l00477"></a>00477                         <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> = rvc0; 
     347<a name="l00478"></a>00478                 } 
     348<a name="l00479"></a>00479                 <span class="keywordtype">void</span> set_rv (<span class="keyword">const</span> RV &amp;rv0) { 
     349<a name="l00480"></a>00480                         ep-&gt;set_rv (rv0); 
     350<a name="l00481"></a>00481                 } 
     351<a name="l00482"></a>00482                 <span class="keywordtype">bool</span> isnamed() { 
     352<a name="l00483"></a>00483                         <span class="keywordflow">return</span> (ep-&gt;isnamed()) &amp;&amp; (<a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> == <a class="code" href="classbdm_1_1mpdf.html#5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>._dsize()); 
     353<a name="l00484"></a>00484                 } 
     354<a name="l00486"></a>00486 }; 
     355<a name="l00487"></a>00487 SHAREDPTR(mpdf); 
     356<a name="l00488"></a>00488  
     357<a name="l00490"></a>00490 <span class="keyword">template</span> &lt;<span class="keyword">class</span> EPDF&gt; 
     358<a name="l00491"></a><a class="code" href="classbdm_1_1mpdf__internal.html">00491</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf__internal.html" title="Mpdf with internal epdf that is modified by function condition.">mpdf_internal</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> 
     359<a name="l00492"></a>00492 { 
     360<a name="l00493"></a>00493         <span class="keyword">protected</span> : 
     361<a name="l00495"></a><a class="code" href="classbdm_1_1mpdf__internal.html#47bab632af15120c88aad647ae129468">00495</a>                 EPDF <a class="code" href="classbdm_1_1mpdf__internal.html#47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>; 
     362<a name="l00496"></a>00496         <span class="keyword">public</span>: 
     363<a name="l00498"></a><a class="code" href="classbdm_1_1mpdf__internal.html#e054b86262261abe0724f5890218689f">00498</a>                 <a class="code" href="classbdm_1_1mpdf__internal.html#e054b86262261abe0724f5890218689f" title="constructor">mpdf_internal</a>() : <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>(), <a class="code" href="classbdm_1_1mpdf__internal.html#47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>() {<a class="code" href="classbdm_1_1mpdf.html#147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> (<a class="code" href="classbdm_1_1mpdf__internal.html#47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>);} 
     364<a name="l00501"></a><a class="code" href="classbdm_1_1mpdf__internal.html#1ac61da081667fc54bcd050cc4f6a93e">00501</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf__internal.html#1ac61da081667fc54bcd050cc4f6a93e">condition</a> (<span class="keyword">const</span> vec &amp;cond) { 
     365<a name="l00502"></a>00502                         it_error (<span class="stringliteral">"Not implemented"</span>); 
     366<a name="l00503"></a>00503                 }; 
     367<a name="l00505"></a><a class="code" href="classbdm_1_1mpdf__internal.html#6b4d1cb8d7e230e313b4f0c905874d5a">00505</a>                 EPDF&amp; <a class="code" href="classbdm_1_1mpdf__internal.html#6b4d1cb8d7e230e313b4f0c905874d5a" title="access function to iepdf">e</a>() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>;} 
     368<a name="l00506"></a>00506  
     369<a name="l00508"></a>00508                 vec <a class="code" href="classbdm_1_1mpdf__internal.html#d8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">samplecond</a> (<span class="keyword">const</span> vec &amp;cond); 
     370<a name="l00510"></a>00510                 <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">evallogcond</a> (<span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond); 
     371<a name="l00512"></a>00512                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#e28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> (<span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond); 
     372<a name="l00514"></a>00514                 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#e28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> (<span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond); 
     373<a name="l00516"></a>00516                 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf__internal.html#9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">samplecond_m</a> (<span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N); 
     374<a name="l00517"></a>00517 }; 
     375<a name="l00518"></a>00518  
     376<a name="l00544"></a><a class="code" href="classbdm_1_1datalink.html">00544</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> 
     377<a name="l00545"></a>00545 { 
     378<a name="l00546"></a>00546         <span class="keyword">protected</span>: 
     379<a name="l00548"></a><a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c">00548</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>; 
     380<a name="l00549"></a>00549  
     381<a name="l00551"></a><a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045">00551</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a>; 
     382<a name="l00552"></a>00552  
     383<a name="l00554"></a><a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb">00554</a>                 ivec <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>; 
     384<a name="l00555"></a>00555  
     385<a name="l00556"></a>00556         <span class="keyword">public</span>: 
     386<a name="l00558"></a><a class="code" href="classbdm_1_1datalink.html#b8b5d5074fc1310a37c3713d58b900e2">00558</a>                 <a class="code" href="classbdm_1_1datalink.html#b8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a>() : <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> (0), <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> (0) { } 
     387<a name="l00560"></a><a class="code" href="classbdm_1_1datalink.html#4016403730eb742462614d60393565cd">00560</a>                 <a class="code" href="classbdm_1_1datalink.html#4016403730eb742462614d60393565cd" title="Conevnience constructor.">datalink</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up) { 
     388<a name="l00561"></a>00561                         <a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> (rv, rv_up); 
     389<a name="l00562"></a>00562                 } 
     390<a name="l00563"></a>00563  
     391<a name="l00565"></a><a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67">00565</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up) { 
     392<a name="l00566"></a>00566                         <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = rv.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(); 
     393<a name="l00567"></a>00567                         <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> = rv_up.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(); 
     394<a name="l00568"></a>00568                         <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> = rv.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> (rv_up); 
     395<a name="l00569"></a>00569  
     396<a name="l00570"></a>00570                         it_assert_debug (<a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>.length() == <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>, <span class="stringliteral">"rv is not fully in rv_up"</span>); 
     397<a name="l00571"></a>00571                 } 
     398<a name="l00572"></a>00572  
     399<a name="l00574"></a><a class="code" href="classbdm_1_1datalink.html#724486a37002e7a3a73366c3af9b82ad">00574</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#724486a37002e7a3a73366c3af9b82ad" title="set connection using indices">set_connection</a> (<span class="keywordtype">int</span> ds, <span class="keywordtype">int</span> us, <span class="keyword">const</span> ivec &amp;upind) { 
     400<a name="l00575"></a>00575                         <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = ds; 
     401<a name="l00576"></a>00576                         <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> = us; 
     402<a name="l00577"></a>00577                         <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> = upind; 
     403<a name="l00578"></a>00578  
     404<a name="l00579"></a>00579                         it_assert_debug (<a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>.length() == <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>, <span class="stringliteral">"rv is not fully in rv_up"</span>); 
     405<a name="l00580"></a>00580                 } 
     406<a name="l00581"></a>00581  
     407<a name="l00583"></a><a class="code" href="classbdm_1_1datalink.html#5b5368c3899eed2f670d09142c2548e5">00583</a>                 vec <a class="code" href="classbdm_1_1datalink.html#5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &amp;quot;Up&amp;quot;.">pushdown</a> (<span class="keyword">const</span> vec &amp;val_up) { 
     408<a name="l00584"></a>00584                         it_assert_debug (<a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>); 
     409<a name="l00585"></a>00585                         <span class="keywordflow">return</span> get_vec (val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>); 
     410<a name="l00586"></a>00586                 } 
     411<a name="l00587"></a>00587  
     412<a name="l00589"></a><a class="code" href="classbdm_1_1datalink.html#610e966f2edb1fcd6a5b28267c571793">00589</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#610e966f2edb1fcd6a5b28267c571793" title="Fill val of &amp;quot;Up&amp;quot; by my pieces.">pushup</a> (vec &amp;val_up, <span class="keyword">const</span> vec &amp;val) { 
     413<a name="l00590"></a>00590                         it_assert_debug (<a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">"Wrong val"</span>); 
     414<a name="l00591"></a>00591                         it_assert_debug (<a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>); 
     415<a name="l00592"></a>00592                         set_subvector (val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>, val); 
     416<a name="l00593"></a>00593                 } 
     417<a name="l00594"></a>00594 }; 
     418<a name="l00595"></a>00595  
     419<a name="l00597"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00597</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> 
     420<a name="l00598"></a>00598 { 
     421<a name="l00599"></a>00599         <span class="keyword">protected</span>: 
     422<a name="l00601"></a><a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9">00601</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>; 
     423<a name="l00602"></a>00602  
     424<a name="l00604"></a><a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783">00604</a>                 ivec <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>; 
    418425<a name="l00605"></a>00605  
    419 <a name="l00609"></a><a class="code" href="classbdm_1_1mepdf.html">00609</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> { 
    420 <a name="l00610"></a>00610         <span class="keywordtype">bool</span> owning_ep; <span class="comment">// flag trigers deleting ep by destructor</span> 
    421 <a name="l00611"></a>00611 <span class="keyword">public</span>: 
    422 <a name="l00613"></a><a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155">00613</a>         <a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>(){}; 
    423 <a name="l00614"></a>00614         <a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a> ( <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* em, <span class="keywordtype">bool</span> owning_ep0=<span class="keyword">false</span> ) :<a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> ( ) {<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>= em ;owning_ep=owning_ep0;<a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>=0;}; 
    424 <a name="l00615"></a>00615         <a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a> (<span class="keyword">const</span> epdf* em ) :mpdf ( ) {<a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>=<span class="keyword">const_cast&lt;</span>epdf*<span class="keyword">&gt;</span>( em );}; 
    425 <a name="l00616"></a><a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c">00616</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c" title="Update ep so that it represents this mpdf conditioned on rvc = cond.">condition</a> ( <span class="keyword">const</span> vec &amp;cond ) {} 
    426 <a name="l00617"></a>00617         ~<a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a>(){<span class="keywordflow">if</span> (owning_ep) <span class="keyword">delete</span> <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>;} 
    427 <a name="l00625"></a><a class="code" href="classbdm_1_1mepdf.html#27ef18a3e3b1b5de02739d1324bf25fb">00625</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#27ef18a3e3b1b5de02739d1324bf25fb">from_setting</a>(<span class="keyword">const</span> Setting &amp;<span class="keyword">set</span>){ 
    428 <a name="l00626"></a>00626                 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* e = UI::build&lt;epdf&gt;(<span class="keyword">set</span>,<span class="stringliteral">"epdf"</span>); 
    429 <a name="l00627"></a>00627                 <a class="code" href="classbdm_1_1mpdf.html#5eea43c56d38e4441bfb30270db949c0" title="pointer to internal epdf">ep</a>=     e;  
    430 <a name="l00628"></a>00628                 owning_ep=<span class="keyword">true</span>; 
    431 <a name="l00629"></a>00629         } 
    432 <a name="l00630"></a>00630 }; 
    433 <a name="l00631"></a>00631 <a class="code" href="user__info_8h.html#4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a>(mepdf); 
    434 <a name="l00632"></a>00632  
    435 <a name="l00636"></a><a class="code" href="classbdm_1_1compositepdf.html">00636</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1compositepdf.html" title="Chain rule of pdfs - abstract part common for mprod and merger. this abstract class...">compositepdf</a> { 
    436 <a name="l00637"></a>00637 <span class="keyword">protected</span>: 
    437 <a name="l00639"></a><a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a">00639</a>   Array&lt;mpdf*&gt; <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>; 
    438 <a name="l00640"></a>00640   <span class="keywordtype">bool</span> owning_mpdfs; 
    439 <a name="l00641"></a>00641 <span class="keyword">public</span>: 
    440 <a name="l00642"></a>00642         <a class="code" href="classbdm_1_1compositepdf.html" title="Chain rule of pdfs - abstract part common for mprod and merger. this abstract class...">compositepdf</a>():<a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>(0){}; 
    441 <a name="l00643"></a>00643         <a class="code" href="classbdm_1_1compositepdf.html" title="Chain rule of pdfs - abstract part common for mprod and merger. this abstract class...">compositepdf</a>(Array&lt;mpdf*&gt; A0, <span class="keywordtype">bool</span> own=<span class="keyword">false</span>){set_elements(A0,own);}; 
    442 <a name="l00644"></a>00644         <span class="keywordtype">void</span> set_elements(Array&lt;mpdf*&gt; A0, <span class="keywordtype">bool</span> own=<span class="keyword">false</span>) {<a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>=A0;owning_mpdfs=own;}; 
    443 <a name="l00646"></a>00646   RV <a class="code" href="classbdm_1_1compositepdf.html#c73d39acc4378eee6a63155c3517d3c9" title="find common rv, flag">getrv</a>(<span class="keywordtype">bool</span> checkoverlap = <span class="keyword">false</span>); 
    444 <a name="l00648"></a>00648   <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1compositepdf.html#c71fc2c51f49d797e61f479f543c75ce" title="common rvc of all mpdfs is written to rvc">setrvc</a>(<span class="keyword">const</span> RV &amp;rv, RV &amp;rvc); 
    445 <a name="l00649"></a>00649   ~compositepdf(){<span class="keywordflow">if</span> (owning_mpdfs) <span class="keywordflow">for</span>(<span class="keywordtype">int</span> i=0;i&lt;<a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>.length();i++){<span class="keyword">delete</span> <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>(i);}}; 
    446 <a name="l00650"></a>00650 }; 
    447 <a name="l00651"></a>00651  
    448 <a name="l00659"></a><a class="code" href="classbdm_1_1DS.html">00659</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> 
    449 <a name="l00660"></a>00660 { 
    450 <a name="l00661"></a>00661 <span class="keyword">protected</span>: 
    451 <a name="l00662"></a>00662   <span class="keywordtype">int</span> dtsize; 
    452 <a name="l00663"></a>00663   <span class="keywordtype">int</span> utsize; 
    453 <a name="l00665"></a><a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec">00665</a>   <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>; 
    454 <a name="l00667"></a><a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702">00667</a>   <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span> 
    455 <a name="l00669"></a><a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867">00669</a> <span class="comment"></span>  <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut; 
    456 <a name="l00670"></a>00670 <span class="keyword">public</span>: 
    457 <a name="l00672"></a><a class="code" href="classbdm_1_1DS.html#bedd82e08ae6686b4b1732a122c2201a">00672</a>   <a class="code" href="classbdm_1_1DS.html#bedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() : <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>(), <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>() {}; 
    458 <a name="l00674"></a><a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba">00674</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a>(vec &amp;dt) {it_error(<span class="stringliteral">"abstract class"</span>);}; 
    459 <a name="l00676"></a><a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832">00676</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a>(vec &amp;dt, <span class="keyword">const</span> ivec &amp;indeces) {it_error(<span class="stringliteral">"abstract class"</span>);}; 
    460 <a name="l00678"></a><a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a">00678</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a>(vec &amp;ut) {it_error(<span class="stringliteral">"abstract class"</span>);}; 
    461 <a name="l00680"></a><a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d">00680</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d" title="Accepts action variables at specific indeces.">write</a>(vec &amp;ut, <span class="keyword">const</span> ivec &amp;indeces) {it_error(<span class="stringliteral">"abstract class"</span>);}; 
    462 <a name="l00681"></a>00681  
    463 <a name="l00683"></a>00683   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#9a14c64d881e838ddc3a5617ee8a973b" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>() = 0; 
    464 <a name="l00684"></a>00684  
    465 <a name="l00686"></a><a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e">00686</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a>(<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L) { 
    466 <a name="l00687"></a>00687     it_assert_debug(dtsize == <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(), <span class="stringliteral">""</span>); 
    467 <a name="l00688"></a>00688     it_assert_debug(utsize == <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(), <span class="stringliteral">""</span>); 
    468 <a name="l00689"></a>00689  
    469 <a name="l00690"></a>00690     <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a> = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <span class="stringliteral">""</span>); 
    470 <a name="l00691"></a>00691     L_ut = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">""</span>); 
    471 <a name="l00692"></a>00692   } 
    472 <a name="l00694"></a><a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf">00694</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a>(<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L) { 
    473 <a name="l00695"></a>00695     vec tmp(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() + <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>()); 
    474 <a name="l00696"></a>00696     <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a>(tmp); 
    475 <a name="l00697"></a>00697     <span class="comment">// d is first in getdata</span> 
    476 <a name="l00698"></a>00698     L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, tmp.left(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>())); 
    477 <a name="l00699"></a>00699     <span class="comment">// u follows after d in getdata</span> 
    478 <a name="l00700"></a>00700     L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(L_ut, tmp.mid(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(), <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>())); 
    479 <a name="l00701"></a>00701   } 
    480 <a name="l00703"></a><a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660">00703</a>   <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660" title="access function">_drv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> concat(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>);} 
    481 <a name="l00705"></a><a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33">00705</a>   <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>;} 
    482 <a name="l00707"></a><a class="code" href="classbdm_1_1DS.html#821297dfd839d68691324f024e57252f">00707</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#821297dfd839d68691324f024e57252f" title="set random rvariables">set_drv</a>(<span class="keyword">const</span>  <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;drv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;urv) { <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = drv; <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv;} 
    483 <a name="l00708"></a>00708 }; 
    484 <a name="l00709"></a>00709  
    485 <a name="l00731"></a><a class="code" href="classbdm_1_1BM.html">00731</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> 
    486 <a name="l00732"></a>00732 { 
    487 <a name="l00733"></a>00733 <span class="keyword">protected</span>: 
    488 <a name="l00735"></a><a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed">00735</a>   <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; 
    489 <a name="l00737"></a><a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a">00737</a>   <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; 
    490 <a name="l00739"></a><a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee">00739</a>   <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>; 
    491 <a name="l00740"></a>00740 <span class="keyword">public</span>: 
    492 <a name="l00743"></a>00743  
    493 <a name="l00744"></a>00744   <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>() : <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>(0), <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>(true), <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(4), <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(4) { 
    494 <a name="l00745"></a>00745     <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> = -1;<span class="comment">/*empty IDs*/</span> 
    495 <a name="l00746"></a>00746     <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> = 0; 
    496 <a name="l00747"></a>00747     <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(0) = 1;<span class="comment">/*log only mean*/</span> 
    497 <a name="l00748"></a>00748   }; 
    498 <a name="l00749"></a>00749   <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &amp;B) :  <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>(B.<a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>(B.<a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>), <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>(B.<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>) {} 
    499 <a name="l00752"></a><a class="code" href="classbdm_1_1BM.html#40f01563651c1e4fe926189e41a6b8ab">00752</a>   <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#40f01563651c1e4fe926189e41a6b8ab">_copy_</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> NULL;}; 
    500 <a name="l00754"></a>00754  
    501 <a name="l00757"></a>00757  
    502 <a name="l00761"></a>00761   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a>(<span class="keyword">const</span> vec &amp;dt) = 0; 
    503 <a name="l00763"></a>00763   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a>(<span class="keyword">const</span> mat &amp;Dt); 
    504 <a name="l00766"></a><a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">00766</a>   <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a>(<span class="keyword">const</span> vec &amp;dt)<span class="keyword"> const </span>{it_error(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> 0.0;} 
    505 <a name="l00768"></a><a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae">00768</a>   vec <a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a>(<span class="keyword">const</span> mat &amp;dt)<span class="keyword"> const </span>{vec tmp(dt.cols()); <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; dt.cols(); i++) {tmp(i) = <a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a>(dt.get_col(i));} <span class="keywordflow">return</span> tmp;} 
    506 <a name="l00769"></a>00769  
    507 <a name="l00771"></a><a class="code" href="classbdm_1_1BM.html#688d7a2aced1e06aa1c468d73a9e5eba">00771</a>   <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> NULL;}; 
    508 <a name="l00773"></a><a class="code" href="classbdm_1_1BM.html#598b25e3f3d96a5bc00a5faeb5b3c912">00773</a>   <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs a conditional density 1-step ahead predictor.">predictor</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> NULL;}; 
    509 <a name="l00775"></a>00775  
    510 <a name="l00780"></a>00780  
    511 <a name="l00782"></a><a class="code" href="classbdm_1_1BM.html#de95c590d650b2db423d53992f0906cb">00782</a>   <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rvc; 
    512 <a name="l00784"></a><a class="code" href="classbdm_1_1BM.html#b5e8e016be16e4029c789063cb3f3b33">00784</a>   <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1BM.html#b5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> rvc;} 
    513 <a name="l00785"></a>00785  
    514 <a name="l00787"></a><a class="code" href="classbdm_1_1BM.html#6799f4b16a6a59ed58b1d0d6e17116f4">00787</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a>(<span class="keyword">const</span> vec &amp;val) {it_error(<span class="stringliteral">"Not implemented!"</span>);}; 
    515 <a name="l00788"></a>00788  
     426<a name="l00607"></a><a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc">00607</a>                 ivec <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>; 
     427<a name="l00608"></a>00608  
     428<a name="l00609"></a>00609         <span class="keyword">public</span>: 
     429<a name="l00611"></a><a class="code" href="classbdm_1_1datalink__m2e.html#5ad951e9cf850c9bfe4e492e91a50af6">00611</a>                 <a class="code" href="classbdm_1_1datalink__m2e.html#5ad951e9cf850c9bfe4e492e91a50af6" title="Constructor.">datalink_m2e</a>() : <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> (0) { } 
     430<a name="l00613"></a><a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0">00613</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0" title="Set connection between vectors.">set_connection</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up) { 
     431<a name="l00614"></a>00614                         <a class="code" href="classbdm_1_1datalink__m2e.html#add918bf877c48714cff51ee4ad989b0" title="Set connection between vectors.">datalink::set_connection</a> (rv, rv_up); 
     432<a name="l00615"></a>00615                         <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> = rvc.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(); 
     433<a name="l00616"></a>00616                         <span class="comment">//establish v2c connection</span> 
     434<a name="l00617"></a>00617                         rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> (rv_up, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>); 
     435<a name="l00618"></a>00618                 } 
     436<a name="l00619"></a>00619  
     437<a name="l00621"></a><a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703">00621</a>                 vec <a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> (<span class="keyword">const</span> vec &amp;val_up) { 
     438<a name="l00622"></a>00622                         vec tmp (<a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>); 
     439<a name="l00623"></a>00623                         set_subvector (tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, val_up (<a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>)); 
     440<a name="l00624"></a>00624                         <span class="keywordflow">return</span> tmp; 
     441<a name="l00625"></a>00625                 } 
     442<a name="l00627"></a><a class="code" href="classbdm_1_1datalink__m2e.html#b29bc3c7bf2a1d87e77ccaa793d097d5">00627</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#b29bc3c7bf2a1d87e77ccaa793d097d5" title="Copy corresponding values to Up.condition.">pushup_cond</a> (vec &amp;val_up, <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond) { 
     443<a name="l00628"></a>00628                         it_assert_debug (<a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">"Wrong val"</span>); 
     444<a name="l00629"></a>00629                         it_assert_debug (<a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>); 
     445<a name="l00630"></a>00630                         set_subvector (val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>, val); 
     446<a name="l00631"></a>00631                         set_subvector (val_up, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>, cond); 
     447<a name="l00632"></a>00632                 } 
     448<a name="l00633"></a>00633 }; 
     449<a name="l00634"></a>00634  
     450<a name="l00637"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00637</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a> 
     451<a name="l00638"></a>00638 { 
     452<a name="l00639"></a>00639         <span class="keyword">protected</span>: 
     453<a name="l00641"></a><a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d">00641</a>                 ivec <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>; 
     454<a name="l00643"></a><a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5">00643</a>                 ivec <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>; 
     455<a name="l00644"></a>00644  
     456<a name="l00645"></a>00645         <span class="keyword">public</span>: 
     457<a name="l00647"></a><a class="code" href="classbdm_1_1datalink__m2m.html#3baed32cb66f0e2f731032cec0a4d287">00647</a>                 <a class="code" href="classbdm_1_1datalink__m2m.html#3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {}; 
     458<a name="l00649"></a><a class="code" href="classbdm_1_1datalink__m2m.html#0ed49a99e8a3be264b952558b6f515d4">00649</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2m.html#0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">set_connection</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc_up) { 
     459<a name="l00650"></a>00650                         <a class="code" href="classbdm_1_1datalink__m2m.html#0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">datalink_m2e::set_connection</a> (rv, rvc, rv_up); 
     460<a name="l00651"></a>00651                         <span class="comment">//establish c2c connection</span> 
     461<a name="l00652"></a>00652                         rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a> (rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>); 
     462<a name="l00653"></a>00653                         it_assert_debug (<a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>.length() + <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>.length() == <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">"cond is not fully given"</span>); 
     463<a name="l00654"></a>00654                 } 
     464<a name="l00655"></a>00655  
     465<a name="l00657"></a><a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90">00657</a>                 vec <a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &amp;quot;Up&amp;quot;.">get_cond</a> (<span class="keyword">const</span> vec &amp;val_up, <span class="keyword">const</span> vec &amp;cond_up) { 
     466<a name="l00658"></a>00658                         vec tmp (<a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>); 
     467<a name="l00659"></a>00659                         set_subvector (tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, val_up (<a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>)); 
     468<a name="l00660"></a>00660                         set_subvector (tmp, <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, cond_up (<a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>)); 
     469<a name="l00661"></a>00661                         <span class="keywordflow">return</span> tmp; 
     470<a name="l00662"></a>00662                 } 
     471<a name="l00664"></a>00664  
     472<a name="l00665"></a>00665 }; 
     473<a name="l00666"></a>00666  
     474<a name="l00672"></a><a class="code" href="classbdm_1_1logger.html">00672</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> 
     475<a name="l00673"></a>00673 { 
     476<a name="l00674"></a>00674         <span class="keyword">protected</span>: 
     477<a name="l00676"></a><a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f">00676</a>                 Array&lt;RV&gt; <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>; 
     478<a name="l00678"></a><a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02">00678</a>                 Array&lt;string&gt; <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>; 
     479<a name="l00679"></a>00679         <span class="keyword">public</span>: 
     480<a name="l00681"></a><a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf">00681</a>                 <a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a>() : <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> (0), <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> (0) {} 
     481<a name="l00682"></a>00682  
     482<a name="l00685"></a><a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">00685</a>                 <span class="keyword">virtual</span> <span class="keywordtype">int</span> <span class="keyword">add</span> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keywordtype">string</span> prefix = <span class="stringliteral">""</span>) { 
     483<a name="l00686"></a>00686                         <span class="keywordtype">int</span> id; 
     484<a name="l00687"></a>00687                         <span class="keywordflow">if</span> (rv._dsize() &gt; 0) { 
     485<a name="l00688"></a>00688                                 <span class="keywordtype">id</span> = <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length(); 
     486<a name="l00689"></a>00689                                 <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> = concat (<a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix);   <span class="comment">// diff</span> 
     487<a name="l00690"></a>00690                                 <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length (<span class="keywordtype">id</span> + 1, <span class="keyword">true</span>); 
     488<a name="l00691"></a>00691                                 <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> (<span class="keywordtype">id</span>) = rv; 
     489<a name="l00692"></a>00692                         } <span class="keywordflow">else</span> { 
     490<a name="l00693"></a>00693                                 <span class="keywordtype">id</span> = -1; 
     491<a name="l00694"></a>00694                         } 
     492<a name="l00695"></a>00695                         <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span> 
     493<a name="l00696"></a>00696                 } 
     494<a name="l00697"></a>00697  
     495<a name="l00699"></a>00699                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> (<span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &amp;v) = 0; 
     496<a name="l00701"></a>00701                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> (<span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &amp;d) = 0; 
     497<a name="l00702"></a>00702  
     498<a name="l00704"></a>00704                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#4f31c03578a7b9b30d8b1f8c338a37e8" title="Shifts storage position for another time step.">step</a>() = 0; 
     499<a name="l00705"></a>00705  
     500<a name="l00707"></a><a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d">00707</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {}; 
     501<a name="l00708"></a>00708  
     502<a name="l00710"></a><a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc">00710</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {}; 
     503<a name="l00711"></a>00711  
     504<a name="l00712"></a>00712 }; 
     505<a name="l00713"></a>00713  
     506<a name="l00717"></a><a class="code" href="classbdm_1_1mepdf.html">00717</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> 
     507<a name="l00718"></a>00718 { 
     508<a name="l00720"></a>00720                 <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> iepdf; 
     509<a name="l00721"></a>00721         <span class="keyword">public</span>: 
     510<a name="l00723"></a><a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155">00723</a>                 <a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>() { } 
     511<a name="l00725"></a><a class="code" href="classbdm_1_1mepdf.html#1f94e70702ff676f53d95ca7ec38e25c">00725</a>                 <a class="code" href="classbdm_1_1mepdf.html#1f94e70702ff676f53d95ca7ec38e25c" title="Set internal shared pointer.">mepdf</a> (<a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> em) { 
     512<a name="l00726"></a>00726                         iepdf = em; 
     513<a name="l00727"></a>00727                         <a class="code" href="classbdm_1_1mpdf.html#147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> (*iepdf.<a class="code" href="classbdm_1_1shared__ptr.html#37ebcfb6750dd7b5630f1d2354c07a96">get</a>()); 
     514<a name="l00728"></a>00728                         <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> = 0; 
     515<a name="l00729"></a>00729                 } 
     516<a name="l00730"></a>00730  
     517<a name="l00732"></a><a class="code" href="classbdm_1_1mepdf.html#b904a90ef78294040b498717cc13015e">00732</a>                 vec <a class="code" href="classbdm_1_1mepdf.html#b904a90ef78294040b498717cc13015e" title="empty">samplecond</a>(<span class="keyword">const</span> vec &amp;cond){<span class="keywordflow">return</span> iepdf-&gt;sample();} 
     518<a name="l00733"></a><a class="code" href="classbdm_1_1mepdf.html#57decd7718f3789e9d1f10f19def935b">00733</a>                 <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mepdf.html#57decd7718f3789e9d1f10f19def935b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a>(<span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond){<span class="keywordflow">return</span> iepdf-&gt;evallog(val);} 
     519<a name="l00734"></a>00734  
     520<a name="l00742"></a>00742                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#27ef18a3e3b1b5de02739d1324bf25fb">from_setting</a> (<span class="keyword">const</span> Setting &amp;<span class="keyword">set</span>); 
     521<a name="l00743"></a>00743 }; 
     522<a name="l00744"></a>00744 <a class="code" href="user__info_8h.html#4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> (mepdf); 
     523<a name="l00745"></a>00745 SHAREDPTR (mepdf); 
     524<a name="l00746"></a>00746  
     525<a name="l00748"></a>00748 RV get_composite_rv ( <span class="keyword">const</span> Array&lt;shared_ptr&lt;mpdf&gt; &gt; &amp;mpdfs, <span class="keywordtype">bool</span> checkoverlap = <span class="keyword">false</span> ); 
     526<a name="l00749"></a>00749  
     527<a name="l00757"></a><a class="code" href="classbdm_1_1DS.html">00757</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> 
     528<a name="l00758"></a>00758 { 
     529<a name="l00759"></a>00759         <span class="keyword">protected</span>: 
     530<a name="l00760"></a>00760                 <span class="keywordtype">int</span> dtsize; 
     531<a name="l00761"></a>00761                 <span class="keywordtype">int</span> utsize; 
     532<a name="l00763"></a><a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec">00763</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>; 
     533<a name="l00765"></a><a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702">00765</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span> 
     534<a name="l00767"></a><a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867">00767</a> <span class="comment"></span>                <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut; 
     535<a name="l00768"></a>00768         <span class="keyword">public</span>: 
     536<a name="l00770"></a><a class="code" href="classbdm_1_1DS.html#bedd82e08ae6686b4b1732a122c2201a">00770</a>                 <a class="code" href="classbdm_1_1DS.html#bedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() : <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>(), <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>() {}; 
     537<a name="l00772"></a><a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba">00772</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> (vec &amp;dt) { 
     538<a name="l00773"></a>00773                         it_error (<span class="stringliteral">"abstract class"</span>); 
     539<a name="l00774"></a>00774                 }; 
     540<a name="l00776"></a><a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832">00776</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a> (vec &amp;dt, <span class="keyword">const</span> ivec &amp;indeces) { 
     541<a name="l00777"></a>00777                         it_error (<span class="stringliteral">"abstract class"</span>); 
     542<a name="l00778"></a>00778                 }; 
     543<a name="l00780"></a><a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a">00780</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> (vec &amp;ut) { 
     544<a name="l00781"></a>00781                         it_error (<span class="stringliteral">"abstract class"</span>); 
     545<a name="l00782"></a>00782                 }; 
     546<a name="l00784"></a><a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d">00784</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d" title="Accepts action variables at specific indeces.">write</a> (vec &amp;ut, <span class="keyword">const</span> ivec &amp;indeces) { 
     547<a name="l00785"></a>00785                         it_error (<span class="stringliteral">"abstract class"</span>); 
     548<a name="l00786"></a>00786                 }; 
     549<a name="l00787"></a>00787  
     550<a name="l00789"></a>00789                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#9a14c64d881e838ddc3a5617ee8a973b" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>() = 0; 
    516551<a name="l00790"></a>00790  
    517 <a name="l00791"></a>00791  
    518 <a name="l00794"></a>00794  
    519 <a name="l00795"></a>00795   <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; _drv()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;} 
    520 <a name="l00796"></a>00796   <span class="keywordtype">void</span> set_drv(<span class="keyword">const</span> RV &amp;rv) {<a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> = rv;} 
    521 <a name="l00797"></a>00797   <span class="keywordtype">void</span> set_rv(<span class="keyword">const</span> RV &amp;rv) {<span class="keyword">const_cast&lt;</span>epdf&amp;<span class="keyword">&gt;</span>(posterior()).set_rv(rv);} 
    522 <a name="l00798"></a>00798   <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;} 
    523 <a name="l00799"></a>00799   <span class="keywordtype">void</span> set_evalll(<span class="keywordtype">bool</span> evl0) {<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> = evl0;} 
    524 <a name="l00800"></a>00800   <span class="keyword">virtual</span> <span class="keyword">const</span> epdf&amp; posterior() <span class="keyword">const</span> = 0; 
    525 <a name="l00801"></a>00801   <span class="keyword">virtual</span> <span class="keyword">const</span> epdf* _e() <span class="keyword">const</span> = 0; 
    526 <a name="l00803"></a>00803  
    527 <a name="l00806"></a>00806  
    528 <a name="l00808"></a><a class="code" href="classbdm_1_1BM.html#adb539fa2585c8a2a91c54e5aebf330e">00808</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#adb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string recognized are: &amp;quot;logbounds,logll&amp;quot;.">set_options</a>(<span class="keyword">const</span> <span class="keywordtype">string</span> &amp;opt) { 
    529 <a name="l00809"></a>00809     <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(0) = 1; 
    530 <a name="l00810"></a>00810     <span class="keywordflow">if</span> (opt.find(<span class="stringliteral">"logbounds"</span>) != string::npos) {<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(1) = 1; <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(2) = 1;} 
    531 <a name="l00811"></a>00811     <span class="keywordflow">if</span> (opt.find(<span class="stringliteral">"logll"</span>) != string::npos) {<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(3) = 1;} 
    532 <a name="l00812"></a>00812   } 
    533 <a name="l00814"></a><a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca">00814</a>   ivec <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>; 
    534 <a name="l00815"></a>00815  
    535 <a name="l00817"></a><a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207">00817</a>   ivec <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>; 
    536 <a name="l00819"></a><a class="code" href="classbdm_1_1BM.html#2298ca6af9b13a78a4c9e18ab43f1827">00819</a>   <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a>(<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L, <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;name = <span class="stringliteral">""</span>) { 
    537 <a name="l00820"></a>00820     <span class="comment">// internal</span> 
    538 <a name="l00821"></a>00821     <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r; 
    539 <a name="l00822"></a>00822     <span class="keywordflow">if</span> (posterior().isnamed()) {r = posterior().<a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();} 
    540 <a name="l00823"></a>00823     <span class="keywordflow">else</span> {r = <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>(<span class="stringliteral">"est"</span>, posterior().dimension());}; 
    541 <a name="l00824"></a>00824  
    542 <a name="l00825"></a>00825     <span class="comment">// Add mean value</span> 
    543 <a name="l00826"></a>00826     <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(0)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(0) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(r, name + <span class="stringliteral">"mean_"</span>); 
    544 <a name="l00827"></a>00827     <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(1)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(1) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(r, name + <span class="stringliteral">"lb_"</span>); 
    545 <a name="l00828"></a>00828     <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(2)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(2) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(r, name + <span class="stringliteral">"ub_"</span>); 
    546 <a name="l00829"></a>00829     <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(3)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(3) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>(<span class="stringliteral">"ll"</span>, 1), name);    <span class="comment">//TODO: "local" RV</span> 
    547 <a name="l00830"></a>00830   } 
    548 <a name="l00831"></a>00831   <span class="keyword">virtual</span> <span class="keywordtype">void</span> logit(<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L) { 
    549 <a name="l00832"></a>00832     L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(0), posterior().mean()); 
    550 <a name="l00833"></a>00833     <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(1) || <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(2)) {  <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span> 
    551 <a name="l00834"></a>00834       vec ub, lb; 
    552 <a name="l00835"></a>00835       posterior().<a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a>(lb, ub); 
    553 <a name="l00836"></a>00836       L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(1), lb); 
    554 <a name="l00837"></a>00837       L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(2), ub); 
    555 <a name="l00838"></a>00838     } 
    556 <a name="l00839"></a>00839     <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(3)) L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(3), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>); 
    557 <a name="l00840"></a>00840   } 
    558 <a name="l00842"></a>00842 }; 
    559 <a name="l00843"></a>00843  
    560 <a name="l00844"></a>00844  
    561 <a name="l00845"></a>00845 }; <span class="comment">//namespace</span> 
    562 <a name="l00846"></a>00846 <span class="preprocessor">#endif // BDMBASE_H</span> 
     552<a name="l00792"></a><a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e">00792</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L) { 
     553<a name="l00793"></a>00793                         it_assert_debug (dtsize == <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(), <span class="stringliteral">""</span>); 
     554<a name="l00794"></a>00794                         it_assert_debug (utsize == <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(), <span class="stringliteral">""</span>); 
     555<a name="l00795"></a>00795  
     556<a name="l00796"></a>00796                         <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a> = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <span class="stringliteral">""</span>); 
     557<a name="l00797"></a>00797                         L_ut = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">""</span>); 
     558<a name="l00798"></a>00798                 } 
     559<a name="l00800"></a><a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf">00800</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L) { 
     560<a name="l00801"></a>00801                         vec tmp (<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>() + <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>()); 
     561<a name="l00802"></a>00802                         <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> (tmp); 
     562<a name="l00803"></a>00803                         <span class="comment">// d is first in getdata</span> 
     563<a name="l00804"></a>00804                         L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, tmp.left (<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>())); 
     564<a name="l00805"></a>00805                         <span class="comment">// u follows after d in getdata</span> 
     565<a name="l00806"></a>00806                         L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> (L_ut, tmp.mid (<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>(), <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#de30156104f61d86c94f758861418089">_dsize</a>())); 
     566<a name="l00807"></a>00807                 } 
     567<a name="l00809"></a><a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660">00809</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660" title="access function">_drv</a>()<span class="keyword"> const </span>{ 
     568<a name="l00810"></a>00810                         <span class="keywordflow">return</span> concat (<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>); 
     569<a name="l00811"></a>00811                 } 
     570<a name="l00813"></a><a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33">00813</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{ 
     571<a name="l00814"></a>00814                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; 
     572<a name="l00815"></a>00815                 } 
     573<a name="l00817"></a><a class="code" href="classbdm_1_1DS.html#821297dfd839d68691324f024e57252f">00817</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#821297dfd839d68691324f024e57252f" title="set random rvariables">set_drv</a> (<span class="keyword">const</span>  <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;drv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;urv) { 
     574<a name="l00818"></a>00818                         <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = drv; 
     575<a name="l00819"></a>00819                         <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv; 
     576<a name="l00820"></a>00820                 } 
     577<a name="l00821"></a>00821 }; 
     578<a name="l00822"></a>00822  
     579<a name="l00844"></a><a class="code" href="classbdm_1_1BM.html">00844</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> 
     580<a name="l00845"></a>00845 { 
     581<a name="l00846"></a>00846         <span class="keyword">protected</span>: 
     582<a name="l00848"></a><a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed">00848</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; 
     583<a name="l00850"></a><a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a">00850</a>                 <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; 
     584<a name="l00852"></a><a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee">00852</a>                 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>; 
     585<a name="l00853"></a>00853         <span class="keyword">public</span>: 
     586<a name="l00856"></a>00856  
     587<a name="l00857"></a>00857                 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>() : <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> (0), <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> (true), <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (4), <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (4) { 
     588<a name="l00858"></a>00858                         <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> = -1;<span class="comment">/*empty IDs*/</span> 
     589<a name="l00859"></a>00859                         <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> = 0; 
     590<a name="l00860"></a>00860                         <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (0) = 1;  <span class="comment">/*log only mean*/</span> 
     591<a name="l00861"></a>00861                 }; 
     592<a name="l00862"></a>00862                 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &amp;B) :  <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> (B.<a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> (B.<a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>), <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> (B.<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>) {} 
     593<a name="l00865"></a><a class="code" href="classbdm_1_1BM.html#40f01563651c1e4fe926189e41a6b8ab">00865</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#40f01563651c1e4fe926189e41a6b8ab">_copy_</a>()<span class="keyword"> const </span>{ 
     594<a name="l00866"></a>00866                         <span class="keywordflow">return</span> NULL; 
     595<a name="l00867"></a>00867                 }; 
     596<a name="l00869"></a>00869  
     597<a name="l00872"></a>00872  
     598<a name="l00876"></a>00876                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> (<span class="keyword">const</span> vec &amp;dt) = 0; 
     599<a name="l00878"></a>00878                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> (<span class="keyword">const</span> mat &amp;Dt); 
     600<a name="l00881"></a><a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">00881</a>                 <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> (<span class="keyword">const</span> vec &amp;dt)<span class="keyword"> const </span>{ 
     601<a name="l00882"></a>00882                         it_error (<span class="stringliteral">"Not implemented"</span>); 
     602<a name="l00883"></a>00883                         <span class="keywordflow">return</span> 0.0; 
     603<a name="l00884"></a>00884                 } 
     604<a name="l00886"></a><a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae">00886</a>                 vec <a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> (<span class="keyword">const</span> mat &amp;dt)<span class="keyword"> const </span>{ 
     605<a name="l00887"></a>00887                         vec tmp (dt.cols()); 
     606<a name="l00888"></a>00888                         <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; dt.cols(); i++) { 
     607<a name="l00889"></a>00889                                 tmp (i) = <a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> (dt.get_col (i)); 
     608<a name="l00890"></a>00890                         } 
     609<a name="l00891"></a>00891                         <span class="keywordflow">return</span> tmp; 
     610<a name="l00892"></a>00892                 } 
     611<a name="l00893"></a>00893  
     612<a name="l00895"></a><a class="code" href="classbdm_1_1BM.html#688d7a2aced1e06aa1c468d73a9e5eba">00895</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a>()<span class="keyword"> const </span>{ 
     613<a name="l00896"></a>00896                         it_error (<span class="stringliteral">"Not implemented"</span>); 
     614<a name="l00897"></a>00897                         <span class="keywordflow">return</span> NULL; 
     615<a name="l00898"></a>00898                 }; 
     616<a name="l00900"></a><a class="code" href="classbdm_1_1BM.html#598b25e3f3d96a5bc00a5faeb5b3c912">00900</a>                 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs conditional density of 1-step ahead predictor .">predictor</a>()<span class="keyword"> const </span>{ 
     617<a name="l00901"></a>00901                         it_error (<span class="stringliteral">"Not implemented"</span>); 
     618<a name="l00902"></a>00902                         <span class="keywordflow">return</span> NULL; 
     619<a name="l00903"></a>00903                 }; 
     620<a name="l00905"></a>00905  
     621<a name="l00910"></a>00910  
     622<a name="l00912"></a><a class="code" href="classbdm_1_1BM.html#de95c590d650b2db423d53992f0906cb">00912</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#de95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>; 
     623<a name="l00914"></a><a class="code" href="classbdm_1_1BM.html#b5e8e016be16e4029c789063cb3f3b33">00914</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1BM.html#b5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{ 
     624<a name="l00915"></a>00915                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#de95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>; 
     625<a name="l00916"></a>00916                 } 
     626<a name="l00917"></a>00917  
     627<a name="l00919"></a><a class="code" href="classbdm_1_1BM.html#6799f4b16a6a59ed58b1d0d6e17116f4">00919</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a> (<span class="keyword">const</span> vec &amp;val) { 
     628<a name="l00920"></a>00920                         it_error (<span class="stringliteral">"Not implemented!"</span>); 
     629<a name="l00921"></a>00921                 }; 
     630<a name="l00922"></a>00922  
     631<a name="l00924"></a>00924  
     632<a name="l00925"></a>00925  
     633<a name="l00928"></a>00928  
     634<a name="l00929"></a>00929                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; _drv()<span class="keyword"> const </span>{ 
     635<a name="l00930"></a>00930                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; 
     636<a name="l00931"></a>00931                 } 
     637<a name="l00932"></a>00932                 <span class="keywordtype">void</span> set_drv (<span class="keyword">const</span> RV &amp;rv) { 
     638<a name="l00933"></a>00933                         <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> = rv; 
     639<a name="l00934"></a>00934                 } 
     640<a name="l00935"></a>00935                 <span class="keywordtype">void</span> set_rv (<span class="keyword">const</span> RV &amp;rv) { 
     641<a name="l00936"></a>00936                         <span class="keyword">const_cast&lt;</span>epdf&amp;<span class="keyword">&gt;</span> (posterior()).set_rv (rv); 
     642<a name="l00937"></a>00937                 } 
     643<a name="l00938"></a>00938                 <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{ 
     644<a name="l00939"></a>00939                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; 
     645<a name="l00940"></a>00940                 } 
     646<a name="l00941"></a>00941                 <span class="keywordtype">void</span> set_evalll (<span class="keywordtype">bool</span> evl0) { 
     647<a name="l00942"></a>00942                         <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> = evl0; 
     648<a name="l00943"></a>00943                 } 
     649<a name="l00944"></a>00944                 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf&amp; posterior() <span class="keyword">const</span> = 0; 
     650<a name="l00946"></a>00946  
     651<a name="l00949"></a>00949  
     652<a name="l00951"></a><a class="code" href="classbdm_1_1BM.html#adb539fa2585c8a2a91c54e5aebf330e">00951</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#adb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &amp;quot;logbounds,logll&amp;quot;.">set_options</a> (<span class="keyword">const</span> <span class="keywordtype">string</span> &amp;opt) { 
     653<a name="l00952"></a>00952                         <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (0) = 1; 
     654<a name="l00953"></a>00953                         <span class="keywordflow">if</span> (opt.find (<span class="stringliteral">"logbounds"</span>) != string::npos) { 
     655<a name="l00954"></a>00954                                 <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (1) = 1; 
     656<a name="l00955"></a>00955                                 <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (2) = 1; 
     657<a name="l00956"></a>00956                         } 
     658<a name="l00957"></a>00957                         <span class="keywordflow">if</span> (opt.find (<span class="stringliteral">"logll"</span>) != string::npos) { 
     659<a name="l00958"></a>00958                                 <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (3) = 1; 
     660<a name="l00959"></a>00959                         } 
     661<a name="l00960"></a>00960                 } 
     662<a name="l00962"></a><a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca">00962</a>                 ivec <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>; 
     663<a name="l00963"></a>00963  
     664<a name="l00965"></a><a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207">00965</a>                 ivec <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>; 
     665<a name="l00967"></a><a class="code" href="classbdm_1_1BM.html#2298ca6af9b13a78a4c9e18ab43f1827">00967</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a> (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L, <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;name = <span class="stringliteral">""</span>) { 
     666<a name="l00968"></a>00968                         <span class="comment">// internal</span> 
     667<a name="l00969"></a>00969                         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r; 
     668<a name="l00970"></a>00970                         <span class="keywordflow">if</span> (posterior().isnamed()) { 
     669<a name="l00971"></a>00971                                 r = posterior().<a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>(); 
     670<a name="l00972"></a>00972                         } <span class="keywordflow">else</span> { 
     671<a name="l00973"></a>00973                                 r = <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> (<span class="stringliteral">"est"</span>, posterior().dimension()); 
     672<a name="l00974"></a>00974                         }; 
     673<a name="l00975"></a>00975  
     674<a name="l00976"></a>00976                         <span class="comment">// Add mean value</span> 
     675<a name="l00977"></a>00977                         <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (0)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (0) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (r, name + <span class="stringliteral">"mean_"</span>); 
     676<a name="l00978"></a>00978                         <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (1)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (1) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (r, name + <span class="stringliteral">"lb_"</span>); 
     677<a name="l00979"></a>00979                         <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (2)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (2) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (r, name + <span class="stringliteral">"ub_"</span>); 
     678<a name="l00980"></a>00980                         <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (3)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (3) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> (<span class="stringliteral">"ll"</span>, 1), name);              <span class="comment">//TODO: "local" RV</span> 
     679<a name="l00981"></a>00981                 } 
     680<a name="l00982"></a>00982                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> logit (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L) { 
     681<a name="l00983"></a>00983                         L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (0), posterior().mean()); 
     682<a name="l00984"></a>00984                         <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (1) || <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (2)) {        <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span> 
     683<a name="l00985"></a>00985                                 vec ub, lb; 
     684<a name="l00986"></a>00986                                 posterior().<a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> (lb, ub); 
     685<a name="l00987"></a>00987                                 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (1), lb); 
     686<a name="l00988"></a>00988                                 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (2), ub); 
     687<a name="l00989"></a>00989                         } 
     688<a name="l00990"></a>00990                         <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (3)) L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (3), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>); 
     689<a name="l00991"></a>00991                 } 
     690<a name="l00993"></a>00993 }; 
     691<a name="l00994"></a>00994  
     692<a name="l00995"></a>00995 <span class="keyword">typedef</span> Array&lt;shared_ptr&lt;epdf&gt; &gt; epdf_array; 
     693<a name="l00996"></a>00996  
     694<a name="l00997"></a>00997 <span class="keyword">typedef</span> Array&lt;shared_ptr&lt;mpdf&gt; &gt; mpdf_array; 
     695<a name="l00998"></a>00998  
     696<a name="l00999"></a>00999 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
     697<a name="l01000"></a><a class="code" href="classbdm_1_1mpdf__internal.html#d8e547695d1cc19219b91164d825c930">01000</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#d8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">mpdf_internal&lt;EPDF&gt;::samplecond</a> (<span class="keyword">const</span> vec &amp;cond) 
     698<a name="l01001"></a>01001 { 
     699<a name="l01002"></a>01002         <a class="code" href="classbdm_1_1mpdf__internal.html#1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond); 
     700<a name="l01003"></a>01003         vec temp = <a class="code" href="classbdm_1_1mpdf__internal.html#47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample(); 
     701<a name="l01004"></a>01004         <span class="keywordflow">return</span> temp; 
     702<a name="l01005"></a>01005 } 
     703<a name="l01006"></a>01006  
     704<a name="l01007"></a>01007 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
     705<a name="l01008"></a><a class="code" href="classbdm_1_1mpdf__internal.html#9554c554054da2d22cb8e908ae9c8823">01008</a> mat <a class="code" href="classbdm_1_1mpdf__internal.html#9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">mpdf_internal&lt;EPDF&gt;::samplecond_m</a> (<span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N) 
     706<a name="l01009"></a>01009 { 
     707<a name="l01010"></a>01010         <a class="code" href="classbdm_1_1mpdf__internal.html#1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond); 
     708<a name="l01011"></a>01011         mat temp (dimension(), N); 
     709<a name="l01012"></a>01012         vec smp (dimension()); 
     710<a name="l01013"></a>01013         <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; N; i++) { 
     711<a name="l01014"></a>01014                 smp = <a class="code" href="classbdm_1_1mpdf__internal.html#47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample(); 
     712<a name="l01015"></a>01015                 temp.set_col (i, smp); 
     713<a name="l01016"></a>01016         } 
     714<a name="l01017"></a>01017  
     715<a name="l01018"></a>01018         <span class="keywordflow">return</span> temp; 
     716<a name="l01019"></a>01019 } 
     717<a name="l01020"></a>01020  
     718<a name="l01021"></a>01021 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
     719<a name="l01022"></a><a class="code" href="classbdm_1_1mpdf__internal.html#89076e62b8d7df7616bad68c94591948">01022</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">mpdf_internal&lt;EPDF&gt;::evallogcond</a> (<span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;cond) 
     720<a name="l01023"></a>01023 { 
     721<a name="l01024"></a>01024         <span class="keywordtype">double</span> tmp; 
     722<a name="l01025"></a>01025         <a class="code" href="classbdm_1_1mpdf__internal.html#1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond); 
     723<a name="l01026"></a>01026         tmp = <a class="code" href="classbdm_1_1mpdf__internal.html#47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog (dt); 
     724<a name="l01027"></a>01027         <span class="comment">// it_assert_debug(std::isfinite(tmp), "Infinite value");</span> 
     725<a name="l01028"></a>01028         <span class="keywordflow">return</span> tmp; 
     726<a name="l01029"></a>01029 } 
     727<a name="l01030"></a>01030  
     728<a name="l01031"></a>01031 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
     729<a name="l01032"></a><a class="code" href="classbdm_1_1mpdf__internal.html#e28c214e3063733a6e4d17738941c61c">01032</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#e28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal&lt;EPDF&gt;::evallogcond_m</a> (<span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond) 
     730<a name="l01033"></a>01033 { 
     731<a name="l01034"></a>01034         <a class="code" href="classbdm_1_1mpdf__internal.html#1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond); 
     732<a name="l01035"></a>01035         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m (Dt); 
     733<a name="l01036"></a>01036 } 
     734<a name="l01037"></a>01037  
     735<a name="l01038"></a>01038 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
     736<a name="l01039"></a><a class="code" href="classbdm_1_1mpdf__internal.html#e82db07ce8af02f29cfd81e014edb3db">01039</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#e28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal&lt;EPDF&gt;::evallogcond_m</a> (<span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond) 
     737<a name="l01040"></a>01040 { 
     738<a name="l01041"></a>01041         <a class="code" href="classbdm_1_1mpdf__internal.html#1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond); 
     739<a name="l01042"></a>01042         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m (Dt); 
     740<a name="l01043"></a>01043 } 
     741<a name="l01044"></a>01044  
     742<a name="l01045"></a>01045 }; <span class="comment">//namespace</span> 
     743<a name="l01046"></a>01046 <span class="preprocessor">#endif // BDMBASE_H</span> 
    563744</pre></div></div> 
    564 <hr size="1"><address style="text-align: right;"><small>Generated on Wed Jul 1 13:05:55 2009 for mixpp by&nbsp; 
     745<hr size="1"><address style="text-align: right;"><small>Generated on Sun Aug 16 17:58:18 2009 for mixpp by&nbsp; 
    565746<a href="http://www.doxygen.org/index.html"> 
    566747<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.5.8 </small></address>