Index: library/doc/html/classbdm_1_1mepdf.html
===================================================================
--- library/doc/html/classbdm_1_1mepdf.html (revision 472)
+++ library/doc/html/classbdm_1_1mepdf.html (revision 538)
@@ -5,5 +5,5 @@
 <link href="doxygen.css" rel="stylesheet" type="text/css">
 </head><body>
-<!-- Generated by Doxygen 1.5.9 -->
+<!-- Generated by Doxygen 1.5.8 -->
 <script type="text/javascript">
 <!--
@@ -68,8 +68,8 @@
 </div>
 <div class="contents">
-<h1>bdm::mepdf Class Reference</h1><!-- doxytag: class="bdm::mepdf" --><!-- doxytag: inherits="bdm::mpdf" -->Unconditional <a class="el" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>, allows using <a class="el" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> in the role of <a class="el" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>.  
+<h1>bdm::mepdf Class Reference</h1><!-- doxytag: class="bdm::mepdf" --><!-- doxytag: inherits="bdm::mpdf" -->Unconditional <a class="el" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>, allows using <a class="el" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> in the role of <a class="el" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>.  
 <a href="#_details">More...</a>
 <p>
-<code>#include &lt;<a class="el" href="bdmbase_8h_source.html">bdmbase.h</a>&gt;</code>
+<code>#include &lt;<a class="el" href="bdmbase_8h-source.html">bdmbase.h</a>&gt;</code>
 <p>
 
@@ -83,10 +83,15 @@
 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Default constructor. <br></td></tr>
 <tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="1f94e70702ff676f53d95ca7ec38e25c"></a><!-- doxytag: member="bdm::mepdf::mepdf" ref="1f94e70702ff676f53d95ca7ec38e25c" args="(shared_ptr&lt; epdf &gt; em)" -->
-&nbsp;</td><td class="memItemRight" valign="bottom"><b>mepdf</b> (<a class="el" href="classbdm_1_1shared__ptr.html">shared_ptr</a>&lt; <a class="el" href="classbdm_1_1epdf.html">epdf</a> &gt; em)</td></tr>
-
-<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="b2b898058169e7ed9a6dc7cd4e1c147c"></a><!-- doxytag: member="bdm::mepdf::condition" ref="b2b898058169e7ed9a6dc7cd4e1c147c" args="(const vec &amp;cond)" -->
-void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c">condition</a> (const vec &amp;cond)</td></tr>
+&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mepdf.html#1f94e70702ff676f53d95ca7ec38e25c">mepdf</a> (<a class="el" href="classbdm_1_1shared__ptr.html">shared_ptr</a>&lt; <a class="el" href="classbdm_1_1epdf.html">epdf</a> &gt; em)</td></tr>
+
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Set internal shared pointer. <br></td></tr>
+<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="b904a90ef78294040b498717cc13015e"></a><!-- doxytag: member="bdm::mepdf::samplecond" ref="b904a90ef78294040b498717cc13015e" args="(const vec &amp;cond)" -->
+vec&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mepdf.html#b904a90ef78294040b498717cc13015e">samplecond</a> (const vec &amp;cond)</td></tr>
 
 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">empty <br></td></tr>
+<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="57decd7718f3789e9d1f10f19def935b"></a><!-- doxytag: member="bdm::mepdf::evallogcond" ref="57decd7718f3789e9d1f10f19def935b" args="(const vec &amp;val, const vec &amp;cond)" -->
+double&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mepdf.html#57decd7718f3789e9d1f10f19def935b">evallogcond</a> (const vec &amp;val, const vec &amp;cond)</td></tr>
+
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Shortcut for conditioning and evaluation of the internal <a class="el" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>. In some cases, this operation can be implemented efficiently. <br></td></tr>
 <tr><td class="memItemLeft" nowrap align="right" valign="top">void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mepdf.html#27ef18a3e3b1b5de02739d1324bf25fb">from_setting</a> (const Setting &amp;set)</td></tr>
 
@@ -104,40 +109,27 @@
 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">This method TODO. <br></td></tr>
 <tr><td colspan="2"><div class="groupHeader">Matematical operations</div></td></tr>
-<tr><td class="memItemLeft" nowrap align="right" valign="top">virtual vec&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mpdf.html#b024f2e636e5507c755de4a6df1f1e99">samplecond</a> (const vec &amp;cond)</td></tr>
-
-<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Returns a sample from the density conditioned on <code>cond</code>, <img class="formulaInl" alt="$x \sim epdf(rv|cond)$" src="form_11.png">.  <a href="#b024f2e636e5507c755de4a6df1f1e99"></a><br></td></tr>
 <tr><td class="memItemLeft" nowrap align="right" valign="top">virtual mat&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mpdf.html#6e497d501331057309d2fddf63259d1a">samplecond_m</a> (const vec &amp;cond, int N)</td></tr>
 
 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Returns.  <a href="#6e497d501331057309d2fddf63259d1a"></a><br></td></tr>
-<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="cfcbb897bf42015a7979b17d891fd9b5"></a><!-- doxytag: member="bdm::mepdf::evallogcond" ref="cfcbb897bf42015a7979b17d891fd9b5" args="(const vec &amp;dt, const vec &amp;cond)" -->
-virtual double&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mpdf.html#cfcbb897bf42015a7979b17d891fd9b5">evallogcond</a> (const vec &amp;dt, const vec &amp;cond)</td></tr>
-
-<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Shortcut for conditioning and evaluation of the internal <a class="el" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>. In some cases, this operation can be implemented efficiently. <br></td></tr>
-<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="f97c61ecfb1f44ef6f08dee7bc15eab3"></a><!-- doxytag: member="bdm::mepdf::evallogcond_m" ref="f97c61ecfb1f44ef6f08dee7bc15eab3" args="(const mat &amp;Dt, const vec &amp;cond)" -->
-virtual vec&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mpdf.html#f97c61ecfb1f44ef6f08dee7bc15eab3">evallogcond_m</a> (const mat &amp;Dt, const vec &amp;cond)</td></tr>
+<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="0b0ed1ed663071bb7cf4a1349eb94fcb"></a><!-- doxytag: member="bdm::mepdf::evallogcond_m" ref="0b0ed1ed663071bb7cf4a1349eb94fcb" args="(const mat &amp;Dt, const vec &amp;cond)" -->
+virtual vec&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mpdf.html#0b0ed1ed663071bb7cf4a1349eb94fcb">evallogcond_m</a> (const mat &amp;Dt, const vec &amp;cond)</td></tr>
 
 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Matrix version of evallogcond. <br></td></tr>
-<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="2d7d3c23e3273e97c12c396dcc06b606"></a><!-- doxytag: member="bdm::mepdf::evallogcond_m" ref="2d7d3c23e3273e97c12c396dcc06b606" args="(const Array&lt; vec &gt; &amp;Dt, const vec &amp;cond)" -->
-virtual vec&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mpdf.html#2d7d3c23e3273e97c12c396dcc06b606">evallogcond_m</a> (const Array&lt; vec &gt; &amp;Dt, const vec &amp;cond)</td></tr>
+<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="2a0d03756f59924fd038980ee60bd904"></a><!-- doxytag: member="bdm::mepdf::evallogcond_m" ref="2a0d03756f59924fd038980ee60bd904" args="(const Array&lt; vec &gt; &amp;Dt, const vec &amp;cond)" -->
+virtual vec&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mpdf.html#2a0d03756f59924fd038980ee60bd904">evallogcond_m</a> (const Array&lt; vec &gt; &amp;Dt, const vec &amp;cond)</td></tr>
 
 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Array&lt;vec&gt; version of evallogcond. <br></td></tr>
 <tr><td colspan="2"><div class="groupHeader">Access to attributes</div></td></tr>
-<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="5571482d150fbcb72cc36f6694ce1a10"></a><!-- doxytag: member="bdm::mepdf::_rv" ref="5571482d150fbcb72cc36f6694ce1a10" args="()" -->
-<a class="el" href="classbdm_1_1RV.html">RV</a>&nbsp;</td><td class="memItemRight" valign="bottom"><b>_rv</b> ()</td></tr>
+<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="222d5280e309c5a053ba73841e98c151"></a><!-- doxytag: member="bdm::mepdf::_rv" ref="222d5280e309c5a053ba73841e98c151" args="() const " -->
+<a class="el" href="classbdm_1_1RV.html">RV</a>&nbsp;</td><td class="memItemRight" valign="bottom"><b>_rv</b> () const </td></tr>
 
 <tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="26001264236846897bd11e4baad47245"></a><!-- doxytag: member="bdm::mepdf::_rvc" ref="26001264236846897bd11e4baad47245" args="()" -->
 <a class="el" href="classbdm_1_1RV.html">RV</a>&nbsp;</td><td class="memItemRight" valign="bottom"><b>_rvc</b> ()</td></tr>
 
-<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="1c2bae3e1e90874e72941863974ec0ed"></a><!-- doxytag: member="bdm::mepdf::dimension" ref="1c2bae3e1e90874e72941863974ec0ed" args="()" -->
-int&nbsp;</td><td class="memItemRight" valign="bottom"><b>dimension</b> ()</td></tr>
+<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="eea4a999ed9679181335927e9cb66d28"></a><!-- doxytag: member="bdm::mepdf::dimension" ref="eea4a999ed9679181335927e9cb66d28" args="() const " -->
+int&nbsp;</td><td class="memItemRight" valign="bottom"><b>dimension</b> () const </td></tr>
 
 <tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="35e135910aed187b7290742f50e61bc8"></a><!-- doxytag: member="bdm::mepdf::dimensionc" ref="35e135910aed187b7290742f50e61bc8" args="()" -->
 int&nbsp;</td><td class="memItemRight" valign="bottom"><b>dimensionc</b> ()</td></tr>
-
-<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="4c2d7d3d1d75cca84993e77867d1ffbe"></a><!-- doxytag: member="bdm::mepdf::e" ref="4c2d7d3d1d75cca84993e77867d1ffbe" args="()" -->
-<a class="el" href="classbdm_1_1epdf.html">epdf</a> *&nbsp;</td><td class="memItemRight" valign="bottom"><b>e</b> ()</td></tr>
-
-<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="a4ba1b384c9c1cb18422a8ba32a5d019"></a><!-- doxytag: member="bdm::mepdf::set_ep" ref="a4ba1b384c9c1cb18422a8ba32a5d019" args="(shared_ptr&lt; epdf &gt; ep)" -->
-void&nbsp;</td><td class="memItemRight" valign="bottom"><b>set_ep</b> (<a class="el" href="classbdm_1_1shared__ptr.html">shared_ptr</a>&lt; <a class="el" href="classbdm_1_1epdf.html">epdf</a> &gt; ep)</td></tr>
 
 <tr><td colspan="2"><div class="groupHeader">Connection to other objects</div></td></tr>
@@ -151,4 +143,13 @@
 bool&nbsp;</td><td class="memItemRight" valign="bottom"><b>isnamed</b> ()</td></tr>
 
+<tr><td colspan="2"><br><h2>Protected Member Functions</h2></td></tr>
+<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="147afacb393324bb3f9a7a89e33f835e"></a><!-- doxytag: member="bdm::mepdf::set_ep" ref="147afacb393324bb3f9a7a89e33f835e" args="(epdf &amp;iepdf)" -->
+void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mpdf.html#147afacb393324bb3f9a7a89e33f835e">set_ep</a> (<a class="el" href="classbdm_1_1epdf.html">epdf</a> &amp;iepdf)</td></tr>
+
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">set internal pointer <code>ep</code> to point to given <code>iepdf</code> <br></td></tr>
+<tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="7555b377f8b5895c9b759c9628ee3e20"></a><!-- doxytag: member="bdm::mepdf::set_ep" ref="7555b377f8b5895c9b759c9628ee3e20" args="(epdf *iepdfp)" -->
+void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1mpdf.html#7555b377f8b5895c9b759c9628ee3e20">set_ep</a> (<a class="el" href="classbdm_1_1epdf.html">epdf</a> *iepdfp)</td></tr>
+
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">set internal pointer <code>ep</code> to point to given <code>iepdf</code> <br></td></tr>
 <tr><td colspan="2"><br><h2>Protected Attributes</h2></td></tr>
 <tr><td class="memItemLeft" nowrap align="right" valign="top"><a class="anchor" name="7c1900976ff13dbc09c9729b3bbff9e6"></a><!-- doxytag: member="bdm::mepdf::dimc" ref="7c1900976ff13dbc09c9729b3bbff9e6" args="" -->
@@ -162,5 +163,5 @@
 </table>
 <hr><a name="_details"></a><h2>Detailed Description</h2>
-Unconditional <a class="el" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>, allows using <a class="el" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> in the role of <a class="el" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>. 
+Unconditional <a class="el" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>, allows using <a class="el" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> in the role of <a class="el" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>. 
 <p>
 <hr><h2>Member Function Documentation</h2>
@@ -182,42 +183,11 @@
 
 <p>
-Load from structure with elements: <div class="fragment"><pre class="fragment"> { <span class="keyword">class </span>= "<a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>",         
-   epdfs = {<span class="keyword">class</span>=<span class="stringliteral">"epdfs"</span>,...}
+Load from structure with elements: <div class="fragment"><pre class="fragment"> { <span class="keyword">class </span>= "<a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>",
+   epdf = {<span class="keyword">class</span>=<span class="stringliteral">"epdf_offspring"</span>,...}
  }
 </pre></div> 
 <p>Reimplemented from <a class="el" href="classbdm_1_1mpdf.html#30a0bceb948e287d497c578e371b1667">bdm::mpdf</a>.</p>
 
-</div>
-</div><p>
-<a class="anchor" name="b024f2e636e5507c755de4a6df1f1e99"></a><!-- doxytag: member="bdm::mepdf::samplecond" ref="b024f2e636e5507c755de4a6df1f1e99" args="(const vec &amp;cond)" -->
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">vec bdm::mpdf::samplecond           </td>
-          <td>(</td>
-          <td class="paramtype">const vec &amp;&nbsp;</td>
-          <td class="paramname"> <em>cond</em>          </td>
-          <td>&nbsp;)&nbsp;</td>
-          <td><code> [virtual, inherited]</code></td>
-        </tr>
-      </table>
-</div>
-<div class="memdoc">
-
-<p>
-Returns a sample from the density conditioned on <code>cond</code>, <img class="formulaInl" alt="$x \sim epdf(rv|cond)$" src="form_11.png">. 
-<p>
-<dl compact><dt><b>Parameters:</b></dt><dd>
-  <table border="0" cellspacing="2" cellpadding="0">
-    <tr><td valign="top"></td><td valign="top"><em>cond</em>&nbsp;</td><td>is numeric value of <code>rv</code> </td></tr>
-  </table>
-</dl>
-
-<p>Reimplemented in <a class="el" href="classbdm_1_1mprod.html#ee715a8013acf9892f6cb489db595555">bdm::mprod</a>.</p>
-
-<p>References <a class="el" href="bdmbase_8h_source.html#l00376">bdm::mpdf::condition()</a>.</p>
-
-<p>Referenced by <a class="el" href="particles_8h_source.html#l00207">bdm::MPF&lt; BM_T &gt;::bayes()</a>, <a class="el" href="particles_8cpp_source.html#l00007">bdm::PF::bayes()</a>, and <a class="el" href="datasources_8cpp_source.html#l00043">bdm::ArxDS::step()</a>.</p>
+<p>References <a class="el" href="shared__ptr_8h-source.html#l00092">bdm::shared_ptr&lt; T &gt;::get()</a>, and <a class="el" href="bdmbase_8h-source.html#l00406">bdm::mpdf::set_ep()</a>.</p>
 
 </div>
@@ -258,14 +228,16 @@
 </dl>
 
-<p>References <a class="el" href="bdmbase_8h_source.html#l00376">bdm::mpdf::condition()</a>.</p>
+<p>Reimplemented in <a class="el" href="classbdm_1_1mpdf__internal.html#9554c554054da2d22cb8e908ae9c8823">bdm::mpdf_internal&lt; EPDF &gt;</a>, <a class="el" href="classbdm_1_1mpdf__internal.html#9554c554054da2d22cb8e908ae9c8823">bdm::mpdf_internal&lt; egamma &gt;</a>, <a class="el" href="classbdm_1_1mpdf__internal.html#9554c554054da2d22cb8e908ae9c8823">bdm::mpdf_internal&lt; enorm&lt; chmat &gt; &gt;</a>, <a class="el" href="classbdm_1_1mpdf__internal.html#9554c554054da2d22cb8e908ae9c8823">bdm::mpdf_internal&lt; enorm&lt; sq_T &gt; &gt;</a>, <a class="el" href="classbdm_1_1mpdf__internal.html#9554c554054da2d22cb8e908ae9c8823">bdm::mpdf_internal&lt; eigamma &gt;</a>, <a class="el" href="classbdm_1_1mpdf__internal.html#9554c554054da2d22cb8e908ae9c8823">bdm::mpdf_internal&lt; elognorm &gt;</a>, <a class="el" href="classbdm_1_1mpdf__internal.html#9554c554054da2d22cb8e908ae9c8823">bdm::mpdf_internal&lt; eiWishartCh &gt;</a>, <a class="el" href="classbdm_1_1mpdf__internal.html#9554c554054da2d22cb8e908ae9c8823">bdm::mpdf_internal&lt; enorm&lt; ldmat &gt; &gt;</a>, and <a class="el" href="classbdm_1_1mpdf__internal.html#9554c554054da2d22cb8e908ae9c8823">bdm::mpdf_internal&lt; TEpdf&lt; sq_T &gt; &gt;</a>.</p>
+
+<p>References <a class="el" href="bdmbase_8h-source.html#l00427">bdm::mpdf::samplecond()</a>.</p>
 
 </div>
 </div><p>
 <hr>The documentation for this class was generated from the following files:<ul>
-<li><a class="el" href="bdmbase_8h_source.html">bdmbase.h</a><li>bdmbase.cpp</ul>
-</div>
-<hr size="1"><address style="text-align: right;"><small>Generated on Wed Aug 5 00:06:55 2009 for mixpp by&nbsp;
+<li><a class="el" href="bdmbase_8h-source.html">bdmbase.h</a><li>bdmbase.cpp</ul>
+</div>
+<hr size="1"><address style="text-align: right;"><small>Generated on Sun Aug 16 17:58:19 2009 for mixpp by&nbsp;
 <a href="http://www.doxygen.org/index.html">
-<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.5.9 </small></address>
+<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.5.8 </small></address>
 </body>
 </html>
