| 83 | | <a name="l00031"></a>00031 <span class="keyword">extern</span> ivec RV_SIZES; |
| 84 | | <a name="l00032"></a>00032 <span class="keyword">extern</span> Array<string> RV_NAMES; |
| 85 | | <a name="l00033"></a>00033 |
| 86 | | <a name="l00035"></a><a class="code" href="classbdm_1_1str.html">00035</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> |
| 87 | | <a name="l00036"></a>00036 { |
| 88 | | <a name="l00037"></a>00037 <span class="keyword">public</span>: |
| 89 | | <a name="l00039"></a><a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0">00039</a> ivec <a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a>; |
| 90 | | <a name="l00041"></a><a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a">00041</a> ivec <a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a>; |
| 91 | | <a name="l00043"></a><a class="code" href="classbdm_1_1str.html#7c6b9dccc6814d7bd1e8e2208a0d3f3f">00043</a> <a class="code" href="classbdm_1_1str.html#7c6b9dccc6814d7bd1e8e2208a0d3f3f" title="Default constructor.">str</a>(ivec ids0, ivec times0) : <a class="code" href="classbdm_1_1str.html#64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a>(ids0), <a class="code" href="classbdm_1_1str.html#905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a>(times0) { |
| 92 | | <a name="l00044"></a>00044 it_assert_debug(times0.length() == ids0.length(), <span class="stringliteral">"Incompatible input"</span>); |
| 93 | | <a name="l00045"></a>00045 }; |
| 94 | | <a name="l00046"></a>00046 }; |
| 95 | | <a name="l00047"></a>00047 |
| 96 | | <a name="l00086"></a><a class="code" href="classbdm_1_1RV.html">00086</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
| 97 | | <a name="l00087"></a>00087 { |
| 98 | | <a name="l00088"></a>00088 <span class="keyword">protected</span>: |
| 99 | | <a name="l00090"></a><a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb">00090</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>; |
| 100 | | <a name="l00092"></a><a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385">00092</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>; |
| 101 | | <a name="l00094"></a><a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b">00094</a> ivec <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>; |
| 102 | | <a name="l00096"></a><a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896">00096</a> ivec <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>; |
| 103 | | <a name="l00097"></a>00097 |
| 104 | | <a name="l00098"></a>00098 <span class="keyword">private</span>: |
| 105 | | <a name="l00100"></a>00100 <span class="keywordtype">void</span> init(<span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes, <span class="keyword">const</span> ivec &in_times); |
| 106 | | <a name="l00101"></a>00101 <span class="keywordtype">int</span> init(<span class="keyword">const</span> <span class="keywordtype">string</span> &name, <span class="keywordtype">int</span> size); |
| 107 | | <a name="l00102"></a>00102 <span class="keyword">public</span>: |
| 108 | | <a name="l00105"></a>00105 |
| 109 | | <a name="l00107"></a><a class="code" href="classbdm_1_1RV.html#3fa35c2744e687c74f7742990e6aa264">00107</a> <a class="code" href="classbdm_1_1RV.html#3fa35c2744e687c74f7742990e6aa264" title="Full constructor.">RV</a>(<span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes, <span class="keyword">const</span> ivec &in_times) { init(in_names, in_sizes, in_times); } |
| 110 | | <a name="l00108"></a>00108 |
| 111 | | <a name="l00110"></a><a class="code" href="classbdm_1_1RV.html#381f5d963bb54efd4e76815dc93d50ce">00110</a> <a class="code" href="classbdm_1_1RV.html#381f5d963bb54efd4e76815dc93d50ce" title="Constructor with times=0.">RV</a>(<span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes) { init(in_names, in_sizes, zeros_i(in_names.length())); } |
| 112 | | <a name="l00111"></a>00111 |
| 113 | | <a name="l00113"></a><a class="code" href="classbdm_1_1RV.html#cb47d71d82639ec7ddf2635b21aafd00">00113</a> <a class="code" href="classbdm_1_1RV.html#cb47d71d82639ec7ddf2635b21aafd00" title="Constructor with sizes=1, times=0.">RV</a>(<span class="keyword">const</span> Array<std::string> &in_names) { init(in_names, ones_i(in_names.length()), zeros_i(in_names.length())); } |
| 114 | | <a name="l00114"></a>00114 |
| 115 | | <a name="l00116"></a><a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412">00116</a> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a>() : <a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>(0), <a class="code" href="classbdm_1_1RV.html#b11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>(0), <a class="code" href="classbdm_1_1RV.html#0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(0), <a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>(0) {} |
| 116 | | <a name="l00118"></a>00118 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a>(<span class="keywordtype">string</span> name, <span class="keywordtype">int</span> sz, <span class="keywordtype">int</span> tm = 0); |
| 117 | | <a name="l00120"></a>00120 |
| 118 | | <a name="l00123"></a>00123 |
| 119 | | <a name="l00125"></a>00125 <span class="keyword">friend</span> std::ostream &<a class="code" href="classbdm_1_1RV.html#cad6f15535d10437f6690cb4492176a8" title="State output, e.g. for debugging.">operator<< </a>(std::ostream &os, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv); |
| 120 | | <a name="l00126"></a>00126 |
| 121 | | <a name="l00127"></a>00127 <span class="keywordtype">int</span> _dsize()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>; } |
| | 86 | <a name="l00032"></a>00032 <span class="keyword">extern</span> ivec RV_SIZES; |
| | 87 | <a name="l00034"></a>00034 <span class="keyword">extern</span> Array<string> RV_NAMES; |
| | 88 | <a name="l00035"></a>00035 |
| | 89 | <a name="l00037"></a><a class="code" href="classbdm_1_1str.html">00037</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> |
| | 90 | <a name="l00038"></a>00038 { |
| | 91 | <a name="l00039"></a>00039 <span class="keyword">public</span>: |
| | 92 | <a name="l00041"></a><a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0">00041</a> ivec <a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a>; |
| | 93 | <a name="l00043"></a><a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a">00043</a> ivec <a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a>; |
| | 94 | <a name="l00045"></a><a class="code" href="classbdm_1_1str.html#a7c6b9dccc6814d7bd1e8e2208a0d3f3f">00045</a> <a class="code" href="classbdm_1_1str.html#a7c6b9dccc6814d7bd1e8e2208a0d3f3f" title="Default constructor.">str</a> (ivec ids0, ivec times0) : <a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a> (ids0), <a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a> (times0) { |
| | 95 | <a name="l00046"></a>00046 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (times0.length() == ids0.length(), <span class="stringliteral">"Incompatible input"</span>); |
| | 96 | <a name="l00047"></a>00047 }; |
| | 97 | <a name="l00048"></a>00048 }; |
| | 98 | <a name="l00049"></a>00049 |
| | 99 | <a name="l00088"></a><a class="code" href="classbdm_1_1RV.html">00088</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
| | 100 | <a name="l00089"></a>00089 { |
| | 101 | <a name="l00090"></a>00090 <span class="keyword">protected</span>: |
| | 102 | <a name="l00092"></a><a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb">00092</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>; |
| | 103 | <a name="l00094"></a><a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385">00094</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>; |
| | 104 | <a name="l00096"></a><a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b">00096</a> ivec <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>; |
| | 105 | <a name="l00098"></a><a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896">00098</a> ivec <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>; |
| | 106 | <a name="l00099"></a>00099 |
| | 107 | <a name="l00100"></a>00100 <span class="keyword">private</span>: |
| | 108 | <a name="l00102"></a>00102 <span class="keywordtype">void</span> init (<span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes, <span class="keyword">const</span> ivec &in_times); |
| | 109 | <a name="l00103"></a>00103 <span class="keywordtype">int</span> init (<span class="keyword">const</span> <span class="keywordtype">string</span> &name, <span class="keywordtype">int</span> size); |
| | 110 | <a name="l00104"></a>00104 <span class="keyword">public</span>: |
| | 111 | <a name="l00107"></a>00107 |
| | 112 | <a name="l00109"></a><a class="code" href="classbdm_1_1RV.html#a3fa35c2744e687c74f7742990e6aa264">00109</a> <a class="code" href="classbdm_1_1RV.html#a3fa35c2744e687c74f7742990e6aa264" title="Full constructor.">RV</a> (<span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes, <span class="keyword">const</span> ivec &in_times) { |
| | 113 | <a name="l00110"></a>00110 init (in_names, in_sizes, in_times); |
| | 114 | <a name="l00111"></a>00111 } |
| | 115 | <a name="l00112"></a>00112 |
| | 116 | <a name="l00114"></a><a class="code" href="classbdm_1_1RV.html#a381f5d963bb54efd4e76815dc93d50ce">00114</a> <a class="code" href="classbdm_1_1RV.html#a381f5d963bb54efd4e76815dc93d50ce" title="Constructor with times=0.">RV</a> (<span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes) { |
| | 117 | <a name="l00115"></a>00115 init (in_names, in_sizes, zeros_i (in_names.length())); |
| | 118 | <a name="l00116"></a>00116 } |
| | 119 | <a name="l00117"></a>00117 |
| | 120 | <a name="l00119"></a><a class="code" href="classbdm_1_1RV.html#acb47d71d82639ec7ddf2635b21aafd00">00119</a> <a class="code" href="classbdm_1_1RV.html#acb47d71d82639ec7ddf2635b21aafd00" title="Constructor with sizes=1, times=0.">RV</a> (<span class="keyword">const</span> Array<std::string> &in_names) { |
| | 121 | <a name="l00120"></a>00120 init (in_names, ones_i (in_names.length()), zeros_i (in_names.length())); |
| | 122 | <a name="l00121"></a>00121 } |
| | 123 | <a name="l00122"></a>00122 |
| | 124 | <a name="l00124"></a><a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412">00124</a> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a>() : <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a> (0), <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a> (0), <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (0), <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> (0) {} |
| | 125 | <a name="l00125"></a>00125 |
| | 126 | <a name="l00127"></a>00127 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> (<span class="keywordtype">string</span> name, <span class="keywordtype">int</span> sz, <span class="keywordtype">int</span> tm = 0); |
| 135 | | <a name="l00146"></a>00146 ivec <a class="code" href="classbdm_1_1RV.html#1367055b2608ad9d50d01a2da6cec869" title="Find indices of self in another rv,.">findself</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>; |
| 136 | | <a name="l00148"></a>00148 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>; |
| 137 | | <a name="l00150"></a>00150 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2); |
| 138 | | <a name="l00152"></a>00152 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#aec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>; |
| 139 | | <a name="l00154"></a>00154 <a class="code" href="classbdm_1_1RV.html#e319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a>(<span class="keyword">const</span> ivec &ind) <span class="keyword">const</span>; |
| 140 | | <a name="l00155"></a>00155 |
| 141 | | <a name="l00157"></a><a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966">00157</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator()</a>(<span class="keyword">const</span> ivec &ind)<span class="keyword"> const </span>{ <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#c0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a>(ind); } |
| 142 | | <a name="l00158"></a>00158 |
| 143 | | <a name="l00160"></a>00160 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator()</a>(<span class="keywordtype">int</span> di1, <span class="keywordtype">int</span> di2) <span class="keyword">const</span>; |
| 144 | | <a name="l00161"></a>00161 |
| 145 | | <a name="l00163"></a>00163 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#bd77cb0899f7fba1d0e34396137b7f1f" title="Shift time by delta.">t</a>(<span class="keywordtype">int</span> delta); |
| 146 | | <a name="l00165"></a>00165 |
| 147 | | <a name="l00168"></a>00168 |
| 148 | | <a name="l00170"></a>00170 <a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> <a class="code" href="classbdm_1_1RV.html#8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes TODO to_string..">tostr</a>() <span class="keyword">const</span>; |
| 149 | | <a name="l00173"></a>00173 ivec <a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &crv) <span class="keyword">const</span>; |
| 150 | | <a name="l00176"></a>00176 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv2, ivec &selfi, ivec &rv2i) <span class="keyword">const</span>; |
| 151 | | <a name="l00178"></a><a class="code" href="classbdm_1_1RV.html#9a5c5aeeaf39299d07763377b05a8241">00178</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> min(<a class="code" href="classbdm_1_1RV.html#ef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>);} |
| 152 | | <a name="l00180"></a>00180 |
| 153 | | <a name="l00181"></a>00181 <span class="comment">// TODO aktualizovat dle soucasneho UI</span> |
| 154 | | <a name="l00196"></a>00196 <span class="comment"></span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#6564bdd36b6845a51446a192d33e1194" title="UI for class RV (description of data vectors).">from_setting</a>(<span class="keyword">const</span> Setting &<span class="keyword">set</span>); |
| 155 | | <a name="l00197"></a>00197 |
| 156 | | <a name="l00198"></a>00198 <span class="comment">// TODO dodelat void to_setting( Setting &set ) const;</span> |
| 157 | | <a name="l00199"></a>00199 |
| 158 | | <a name="l00201"></a>00201 <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#ab92b361335a644df654cf7cf7e5ffc0" title="Invalidate all named RVs. Use before initializing any RV instances, with care...">clear_all</a>(); |
| 159 | | <a name="l00202"></a>00202 }; |
| 160 | | <a name="l00203"></a>00203 <a class="code" href="user__info_8h.html#4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a>(RV); |
| 161 | | <a name="l00204"></a>00204 |
| 162 | | <a name="l00206"></a>00206 RV concat(<span class="keyword">const</span> RV &rv1, <span class="keyword">const</span> RV &rv2); |
| 163 | | <a name="l00207"></a>00207 |
| 164 | | <a name="l00209"></a>00209 <span class="keyword">extern</span> RV RV0; |
| | 139 | <a name="l00146"></a>00146 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a39f9b44752376f07e346579b5ff8cbbd" title="Recount size of the corresponding data vector.">countsize</a>() <span class="keyword">const</span>; |
| | 140 | <a name="l00147"></a>00147 ivec cumsizes() <span class="keyword">const</span>; |
| | 141 | <a name="l00148"></a>00148 <span class="keywordtype">int</span> length()<span class="keyword"> const </span>{ |
| | 142 | <a name="l00149"></a>00149 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>; |
| | 143 | <a name="l00150"></a>00150 } |
| | 144 | <a name="l00151"></a>00151 <span class="keywordtype">int</span> id (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{ |
| | 145 | <a name="l00152"></a>00152 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (at); |
| | 146 | <a name="l00153"></a>00153 } |
| | 147 | <a name="l00154"></a>00154 <span class="keywordtype">int</span> size (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{ |
| | 148 | <a name="l00155"></a>00155 <span class="keywordflow">return</span> RV_SIZES (<a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (at)); |
| | 149 | <a name="l00156"></a>00156 } |
| | 150 | <a name="l00157"></a>00157 <span class="keywordtype">int</span> time (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{ |
| | 151 | <a name="l00158"></a>00158 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> (at); |
| | 152 | <a name="l00159"></a>00159 } |
| | 153 | <a name="l00160"></a>00160 std::string name (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{ |
| | 154 | <a name="l00161"></a>00161 <span class="keywordflow">return</span> RV_NAMES (<a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (at)); |
| | 155 | <a name="l00162"></a>00162 } |
| | 156 | <a name="l00163"></a>00163 <span class="keywordtype">void</span> set_time (<span class="keywordtype">int</span> at, <span class="keywordtype">int</span> time0) { |
| | 157 | <a name="l00164"></a>00164 <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> (at) = time0; |
| | 158 | <a name="l00165"></a>00165 } |
| | 159 | <a name="l00167"></a>00167 |
| | 160 | <a name="l00170"></a>00170 |
| | 161 | <a name="l00172"></a>00172 ivec <a class="code" href="classbdm_1_1RV.html#a1367055b2608ad9d50d01a2da6cec869" title="Find indices of self in another rv,.">findself</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>; |
| | 162 | <a name="l00174"></a>00174 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>; |
| | 163 | <a name="l00176"></a>00176 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2); |
| | 164 | <a name="l00178"></a>00178 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>; |
| | 165 | <a name="l00180"></a>00180 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> (<span class="keyword">const</span> ivec &ind) <span class="keyword">const</span>; |
| | 166 | <a name="l00181"></a>00181 |
| | 167 | <a name="l00183"></a><a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966">00183</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>(<span class="keyword">const</span> ivec &ind)<span class="keyword"> const </span>{ |
| | 168 | <a name="l00184"></a>00184 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> (ind); |
| | 169 | <a name="l00185"></a>00185 } |
| | 170 | <a name="l00186"></a>00186 |
| | 171 | <a name="l00188"></a>00188 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>(<span class="keywordtype">int</span> di1, <span class="keywordtype">int</span> di2) <span class="keyword">const</span>; |
| | 172 | <a name="l00189"></a>00189 |
| | 173 | <a name="l00191"></a>00191 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#abd77cb0899f7fba1d0e34396137b7f1f" title="Shift time by delta.">t</a> (<span class="keywordtype">int</span> delta); |
| | 174 | <a name="l00193"></a>00193 |
| | 175 | <a name="l00196"></a>00196 |
| | 176 | <a name="l00198"></a>00198 <a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> <a class="code" href="classbdm_1_1RV.html#a8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes">tostr</a>() <span class="keyword">const</span>; |
| | 177 | <a name="l00201"></a>00201 ivec <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &crv) <span class="keyword">const</span>; |
| | 178 | <a name="l00204"></a>00204 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv2, ivec &selfi, ivec &rv2i) <span class="keyword">const</span>; |
| | 179 | <a name="l00206"></a><a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241">00206</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>()<span class="keyword"> const </span>{ |
| | 180 | <a name="l00207"></a>00207 <span class="keywordflow">return</span> min (<a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>); |
| | 181 | <a name="l00208"></a>00208 } |
| 198 | | <a name="l00267"></a><a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b">00267</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample, from density .">sample</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"not implemneted"</span>); <span class="keywordflow">return</span> vec(0);}; |
| 199 | | <a name="l00269"></a>00269 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#b4cf45fd83cc7573ede9fe1215256058" title="Returns N samples, from density .">sample_m</a>(<span class="keywordtype">int</span> N) <span class="keyword">const</span>; |
| 200 | | <a name="l00272"></a><a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249">00272</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249">evallog</a>(<span class="keyword">const</span> vec &val)<span class="keyword"> const </span>{it_error(<span class="stringliteral">"not implemneted"</span>); <span class="keywordflow">return</span> 0.0;}; |
| 201 | | <a name="l00274"></a><a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62">00274</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#34956d4dd3176eeb5937cf48a1546b62" title="Compute log-probability of multiple values argument val.">evallog_m</a>(<span class="keyword">const</span> mat &Val)<span class="keyword"> const </span>{ |
| 202 | | <a name="l00275"></a>00275 vec x(Val.cols()); |
| 203 | | <a name="l00276"></a>00276 <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < Val.cols(); i++) {x(i) = <a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249">evallog</a>(Val.get_col(i)) ;} |
| 204 | | <a name="l00277"></a>00277 <span class="keywordflow">return</span> x; |
| 205 | | <a name="l00278"></a>00278 } |
| 206 | | <a name="l00280"></a><a class="code" href="classbdm_1_1epdf.html#512dbf057299e871fbc61ed55acb5888">00280</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#512dbf057299e871fbc61ed55acb5888" title="Compute log-probability of multiple values argument val.">evallog_m</a>(<span class="keyword">const</span> Array<vec> &Avec)<span class="keyword"> const </span>{ |
| 207 | | <a name="l00281"></a>00281 vec x(Avec.size()); |
| 208 | | <a name="l00282"></a>00282 <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < Avec.size(); i++) {x(i) = <a class="code" href="classbdm_1_1epdf.html#deab266d63c236c277538867d5c3f249">evallog</a>(Avec(i)) ;} |
| 209 | | <a name="l00283"></a>00283 <span class="keywordflow">return</span> x; |
| 210 | | <a name="l00284"></a>00284 } |
| 211 | | <a name="l00286"></a><a class="code" href="classbdm_1_1epdf.html#e584eac5579c1b6384947ecf66166c77">00286</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>* <a class="code" href="classbdm_1_1epdf.html#e584eac5579c1b6384947ecf66166c77" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>)<span class="keyword"> const </span>{it_warning(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> NULL;} |
| 212 | | <a name="l00287"></a>00287 |
| 213 | | <a name="l00289"></a><a class="code" href="classbdm_1_1epdf.html#3fb2ece54f720b62ad325e61214fa0a1">00289</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1epdf.html#3fb2ece54f720b62ad325e61214fa0a1" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>)<span class="keyword"> const </span>{it_warning(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> NULL;} |
| 214 | | <a name="l00290"></a>00290 |
| 215 | | <a name="l00292"></a><a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75">00292</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"not implemneted"</span>); <span class="keywordflow">return</span> vec(0);}; |
| 216 | | <a name="l00293"></a>00293 |
| 217 | | <a name="l00295"></a><a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c">00295</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"not implemneted"</span>); <span class="keywordflow">return</span> vec(0);}; |
| 218 | | <a name="l00297"></a><a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539">00297</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a>(vec &lb, vec &ub, <span class="keywordtype">double</span> percentage = 0.95)<span class="keyword"> const </span>{ |
| 219 | | <a name="l00298"></a>00298 vec mea = <a class="code" href="classbdm_1_1epdf.html#0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>(); |
| 220 | | <a name="l00299"></a>00299 vec std = sqrt(<a class="code" href="classbdm_1_1epdf.html#4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()); |
| 221 | | <a name="l00300"></a>00300 lb = mea - 2 * std; |
| 222 | | <a name="l00301"></a>00301 ub = mea + 2 * std; |
| 223 | | <a name="l00302"></a>00302 }; |
| 224 | | <a name="l00304"></a>00304 |
| 225 | | <a name="l00310"></a>00310 |
| 226 | | <a name="l00312"></a><a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff">00312</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv0) {<a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> = rv0; } <span class="comment">//it_assert_debug(isnamed(),""); };</span> |
| 227 | | <a name="l00314"></a><a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9">00314</a> <span class="comment"></span> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>()<span class="keyword"> const </span>{<span class="keywordtype">bool</span> b = (<a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> == <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>._dsize()); <span class="keywordflow">return</span> b;} |
| 228 | | <a name="l00316"></a><a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21">00316</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>()<span class="keyword"> const </span>{it_assert_debug(<a class="code" href="classbdm_1_1epdf.html#c4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>(), <span class="stringliteral">""</span>); <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;} |
| 229 | | <a name="l00318"></a>00318 |
| 230 | | <a name="l00321"></a>00321 |
| 231 | | <a name="l00323"></a><a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c">00323</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;} |
| 232 | | <a name="l00331"></a><a class="code" href="classbdm_1_1epdf.html#fa9efc98a065b31c630fe18cc418f725">00331</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#fa9efc98a065b31c630fe18cc418f725">from_setting</a>(<span class="keyword">const</span> Setting &<span class="keyword">set</span>){ |
| 233 | | <a name="l00332"></a>00332 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>* r = UI::build<RV>(<span class="keyword">set</span>,<span class="stringliteral">"rv"</span>); |
| 234 | | <a name="l00333"></a>00333 <span class="keywordflow">if</span> (r){ |
| 235 | | <a name="l00334"></a>00334 <a class="code" href="classbdm_1_1epdf.html#f423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a>(*r); |
| 236 | | <a name="l00335"></a>00335 <span class="keyword">delete</span> r; |
| 237 | | <a name="l00336"></a>00336 } |
| 238 | | <a name="l00337"></a>00337 } |
| 239 | | <a name="l00338"></a>00338 |
| 240 | | <a name="l00339"></a>00339 }; |
| | 215 | <a name="l00267"></a>00267 |
| | 216 | <a name="l00268"></a><a class="code" href="classbdm_1_1epdf.html">00268</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
| | 217 | <a name="l00269"></a>00269 { |
| | 218 | <a name="l00270"></a>00270 <span class="keyword">protected</span>: |
| | 219 | <a name="l00272"></a><a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce">00272</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>; |
| | 220 | <a name="l00274"></a><a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8">00274</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>; |
| | 221 | <a name="l00275"></a>00275 |
| | 222 | <a name="l00276"></a>00276 <span class="keyword">public</span>: |
| | 223 | <a name="l00288"></a>00288 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>() : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> (0), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>() {}; |
| | 224 | <a name="l00289"></a>00289 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &e) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> (e.<a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> (e.<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>) {}; |
| | 225 | <a name="l00290"></a>00290 epdf (<span class="keyword">const</span> RV &rv0) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> (rv0._dsize()) { |
| | 226 | <a name="l00291"></a>00291 <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> (rv0); |
| | 227 | <a name="l00292"></a>00292 }; |
| | 228 | <a name="l00293"></a>00293 <span class="keywordtype">void</span> set_parameters (<span class="keywordtype">int</span> dim0) { |
| | 229 | <a name="l00294"></a>00294 <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> = dim0; |
| | 230 | <a name="l00295"></a>00295 } |
| | 231 | <a name="l00297"></a>00297 |
| | 232 | <a name="l00300"></a>00300 |
| | 233 | <a name="l00302"></a><a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b">00302</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample, from density .">sample</a>()<span class="keyword"> const </span>{ |
| | 234 | <a name="l00303"></a>00303 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"not implemented"</span>); |
| | 235 | <a name="l00304"></a>00304 <span class="keywordflow">return</span> vec(); |
| | 236 | <a name="l00305"></a>00305 } |
| | 237 | <a name="l00306"></a>00306 |
| | 238 | <a name="l00308"></a>00308 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#ab4cf45fd83cc7573ede9fe1215256058" title="Returns N samples, from density .">sample_m</a> (<span class="keywordtype">int</span> N) <span class="keyword">const</span>; |
| | 239 | <a name="l00309"></a>00309 |
| | 240 | <a name="l00312"></a><a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">00312</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">evallog</a> (<span class="keyword">const</span> vec &val)<span class="keyword"> const </span>{ |
| | 241 | <a name="l00313"></a>00313 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"not implemented"</span>); |
| | 242 | <a name="l00314"></a>00314 <span class="keywordflow">return</span> 0.0; |
| | 243 | <a name="l00315"></a>00315 } |
| | 244 | <a name="l00316"></a>00316 |
| | 245 | <a name="l00318"></a>00318 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> (<span class="keyword">const</span> mat &Val) <span class="keyword">const</span>; |
| | 246 | <a name="l00319"></a>00319 |
| | 247 | <a name="l00321"></a>00321 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> (<span class="keyword">const</span> Array<vec> &Avec) <span class="keyword">const</span>; |
| | 248 | <a name="l00322"></a>00322 |
| | 249 | <a name="l00324"></a>00324 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<mpdf></a> <a class="code" href="classbdm_1_1epdf.html#a1499d35b79bce0cfa64fc5cafb9c03b2" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>) <span class="keyword">const</span>; |
| | 250 | <a name="l00325"></a>00325 |
| | 251 | <a name="l00327"></a>00327 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> <a class="code" href="classbdm_1_1epdf.html#aa84b05f5293cab2aeb4e07faffa60906" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>) <span class="keyword">const</span>; |
| | 252 | <a name="l00328"></a>00328 |
| | 253 | <a name="l00330"></a><a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75">00330</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>()<span class="keyword"> const </span>{ |
| | 254 | <a name="l00331"></a>00331 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"not implemneted"</span>); |
| | 255 | <a name="l00332"></a>00332 <span class="keywordflow">return</span> vec(); |
| | 256 | <a name="l00333"></a>00333 } |
| | 257 | <a name="l00334"></a>00334 |
| | 258 | <a name="l00336"></a><a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c">00336</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()<span class="keyword"> const </span>{ |
| | 259 | <a name="l00337"></a>00337 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"not implemneted"</span>); |
| | 260 | <a name="l00338"></a>00338 <span class="keywordflow">return</span> vec(); |
| | 261 | <a name="l00339"></a>00339 } |
| 303 | | <a name="l00461"></a><a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67">00461</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up) { |
| 304 | | <a name="l00462"></a>00462 <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = rv._dsize(); |
| 305 | | <a name="l00463"></a>00463 <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> = rv_up._dsize(); |
| 306 | | <a name="l00464"></a>00464 <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> = rv.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(rv_up); |
| 307 | | <a name="l00465"></a>00465 |
| 308 | | <a name="l00466"></a>00466 it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>.length() == <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>, <span class="stringliteral">"rv is not fully in rv_up"</span>); |
| 309 | | <a name="l00467"></a>00467 } |
| 310 | | <a name="l00468"></a>00468 |
| 311 | | <a name="l00470"></a><a class="code" href="classbdm_1_1datalink.html#724486a37002e7a3a73366c3af9b82ad">00470</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#724486a37002e7a3a73366c3af9b82ad" title="set connection using indices">set_connection</a>(<span class="keywordtype">int</span> ds, <span class="keywordtype">int</span> us, <span class="keyword">const</span> ivec &upind) { |
| 312 | | <a name="l00471"></a>00471 <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = ds; |
| 313 | | <a name="l00472"></a>00472 <a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> = us; |
| 314 | | <a name="l00473"></a>00473 <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> = upind; |
| 315 | | <a name="l00474"></a>00474 |
| 316 | | <a name="l00475"></a>00475 it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>.length() == <a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>, <span class="stringliteral">"rv is not fully in rv_up"</span>); |
| 317 | | <a name="l00476"></a>00476 } |
| 318 | | <a name="l00477"></a>00477 |
| 319 | | <a name="l00479"></a><a class="code" href="classbdm_1_1datalink.html#5b5368c3899eed2f670d09142c2548e5">00479</a> vec <a class="code" href="classbdm_1_1datalink.html#5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &quot;Up&quot;.">pushdown</a>(<span class="keyword">const</span> vec &val_up) { |
| 320 | | <a name="l00480"></a>00480 it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>); |
| 321 | | <a name="l00481"></a>00481 <span class="keywordflow">return</span> get_vec(val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>); |
| 322 | | <a name="l00482"></a>00482 } |
| 323 | | <a name="l00483"></a>00483 |
| 324 | | <a name="l00485"></a><a class="code" href="classbdm_1_1datalink.html#610e966f2edb1fcd6a5b28267c571793">00485</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#610e966f2edb1fcd6a5b28267c571793" title="Fill val of &quot;Up&quot; by my pieces.">pushup</a>(vec &val_up, <span class="keyword">const</span> vec &val) { |
| 325 | | <a name="l00486"></a>00486 it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">"Wrong val"</span>); |
| 326 | | <a name="l00487"></a>00487 it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>); |
| 327 | | <a name="l00488"></a>00488 set_subvector(val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>, val); |
| 328 | | <a name="l00489"></a>00489 } |
| 329 | | <a name="l00490"></a>00490 }; |
| 330 | | <a name="l00491"></a>00491 |
| 331 | | <a name="l00493"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00493</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> |
| 332 | | <a name="l00494"></a>00494 { |
| 333 | | <a name="l00495"></a>00495 <span class="keyword">protected</span>: |
| 334 | | <a name="l00497"></a><a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9">00497</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>; |
| 335 | | <a name="l00498"></a>00498 |
| 336 | | <a name="l00500"></a><a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783">00500</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>; |
| 337 | | <a name="l00501"></a>00501 |
| 338 | | <a name="l00503"></a><a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc">00503</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>; |
| 339 | | <a name="l00504"></a>00504 |
| 340 | | <a name="l00505"></a>00505 <span class="keyword">public</span>: |
| 341 | | <a name="l00507"></a><a class="code" href="classbdm_1_1datalink__m2e.html#5ad951e9cf850c9bfe4e492e91a50af6">00507</a> <a class="code" href="classbdm_1_1datalink__m2e.html#5ad951e9cf850c9bfe4e492e91a50af6" title="Constructor.">datalink_m2e</a>():<a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>(0) { } |
| 342 | | <a name="l00508"></a>00508 |
| 343 | | <a name="l00509"></a>00509 <span class="keywordtype">void</span> set_connection(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up) { |
| 344 | | <a name="l00510"></a>00510 <a class="code" href="classbdm_1_1datalink.html#fb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">datalink::set_connection</a>(rv, rv_up); |
| 345 | | <a name="l00511"></a>00511 <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> = rvc._dsize(); |
| 346 | | <a name="l00512"></a>00512 <span class="comment">//establish v2c connection</span> |
| 347 | | <a name="l00513"></a>00513 rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(rv_up, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>); |
| 348 | | <a name="l00514"></a>00514 } |
| 349 | | <a name="l00515"></a>00515 |
| 350 | | <a name="l00517"></a><a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703">00517</a> vec <a class="code" href="classbdm_1_1datalink__m2e.html#7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a>(<span class="keyword">const</span> vec &val_up) { |
| 351 | | <a name="l00518"></a>00518 vec tmp(<a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>); |
| 352 | | <a name="l00519"></a>00519 set_subvector(tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, val_up(<a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>)); |
| 353 | | <a name="l00520"></a>00520 <span class="keywordflow">return</span> tmp; |
| 354 | | <a name="l00521"></a>00521 } |
| 355 | | <a name="l00522"></a>00522 |
| 356 | | <a name="l00523"></a>00523 <span class="keywordtype">void</span> pushup_cond(vec &val_up, <span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond) { |
| 357 | | <a name="l00524"></a>00524 it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#bc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">"Wrong val"</span>); |
| 358 | | <a name="l00525"></a>00525 it_assert_debug(<a class="code" href="classbdm_1_1datalink.html#0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>); |
| 359 | | <a name="l00526"></a>00526 set_subvector(val_up, <a class="code" href="classbdm_1_1datalink.html#240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>, val); |
| 360 | | <a name="l00527"></a>00527 set_subvector(val_up, <a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>, cond); |
| 361 | | <a name="l00528"></a>00528 } |
| 362 | | <a name="l00529"></a>00529 }; |
| 363 | | <a name="l00530"></a>00530 |
| 364 | | <a name="l00533"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00533</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a> |
| 365 | | <a name="l00534"></a>00534 { |
| 366 | | <a name="l00535"></a>00535 <span class="keyword">protected</span>: |
| 367 | | <a name="l00537"></a><a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d">00537</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>; |
| 368 | | <a name="l00539"></a><a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5">00539</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>; |
| 369 | | <a name="l00540"></a>00540 |
| 370 | | <a name="l00541"></a>00541 <span class="keyword">public</span>: |
| 371 | | <a name="l00543"></a><a class="code" href="classbdm_1_1datalink__m2m.html#3baed32cb66f0e2f731032cec0a4d287">00543</a> <a class="code" href="classbdm_1_1datalink__m2m.html#3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {}; |
| 372 | | <a name="l00544"></a>00544 <span class="keywordtype">void</span> set_connection(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc_up) { |
| 373 | | <a name="l00545"></a>00545 datalink_m2e::set_connection(rv, rvc, rv_up); |
| 374 | | <a name="l00546"></a>00546 <span class="comment">//establish c2c connection</span> |
| 375 | | <a name="l00547"></a>00547 rvc.<a class="code" href="classbdm_1_1RV.html#cbebdb5e0d30101a6eb63550ef701c55">dataind</a>(rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>); |
| 376 | | <a name="l00548"></a>00548 it_assert_debug(<a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>.length() + <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>.length() == <a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">"cond is not fully given"</span>); |
| 377 | | <a name="l00549"></a>00549 } |
| 378 | | <a name="l00550"></a>00550 |
| 379 | | <a name="l00552"></a><a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90">00552</a> vec <a class="code" href="classbdm_1_1datalink__m2m.html#911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &quot;Up&quot;.">get_cond</a>(<span class="keyword">const</span> vec &val_up, <span class="keyword">const</span> vec &cond_up) { |
| 380 | | <a name="l00553"></a>00553 vec tmp(<a class="code" href="classbdm_1_1datalink__m2e.html#3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>); |
| 381 | | <a name="l00554"></a>00554 set_subvector(tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, val_up(<a class="code" href="classbdm_1_1datalink__m2e.html#43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>)); |
| 382 | | <a name="l00555"></a>00555 set_subvector(tmp, <a class="code" href="classbdm_1_1datalink__m2m.html#0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, cond_up(<a class="code" href="classbdm_1_1datalink__m2m.html#d64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>)); |
| 383 | | <a name="l00556"></a>00556 <span class="keywordflow">return</span> tmp; |
| 384 | | <a name="l00557"></a>00557 } |
| 385 | | <a name="l00559"></a>00559 |
| 386 | | <a name="l00560"></a>00560 }; |
| 387 | | <a name="l00561"></a>00561 |
| 388 | | <a name="l00567"></a><a class="code" href="classbdm_1_1logger.html">00567</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
| 389 | | <a name="l00568"></a>00568 { |
| 390 | | <a name="l00569"></a>00569 <span class="keyword">protected</span>: |
| 391 | | <a name="l00571"></a><a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f">00571</a> Array<RV> <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>; |
| 392 | | <a name="l00573"></a><a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02">00573</a> Array<string> <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>; |
| 393 | | <a name="l00574"></a>00574 <span class="keyword">public</span>: |
| 394 | | <a name="l00576"></a><a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf">00576</a> <a class="code" href="classbdm_1_1logger.html#f9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a>() : <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>(0), <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>(0) {} |
| 395 | | <a name="l00577"></a>00577 |
| 396 | | <a name="l00580"></a><a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">00580</a> <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keywordtype">string</span> prefix = <span class="stringliteral">""</span>) { |
| 397 | | <a name="l00581"></a>00581 <span class="keywordtype">int</span> id; |
| 398 | | <a name="l00582"></a>00582 <span class="keywordflow">if</span> (rv._dsize() > 0) { |
| 399 | | <a name="l00583"></a>00583 <span class="keywordtype">id</span> = <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length(); |
| 400 | | <a name="l00584"></a>00584 <a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> = concat(<a class="code" href="classbdm_1_1logger.html#68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix); <span class="comment">// diff</span> |
| 401 | | <a name="l00585"></a>00585 <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length(<span class="keywordtype">id</span> + 1, <span class="keyword">true</span>); |
| 402 | | <a name="l00586"></a>00586 <a class="code" href="classbdm_1_1logger.html#c54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>(<span class="keywordtype">id</span>) = rv; |
| 403 | | <a name="l00587"></a>00587 } |
| 404 | | <a name="l00588"></a>00588 <span class="keywordflow">else</span> { <span class="keywordtype">id</span> = -1;} |
| 405 | | <a name="l00589"></a>00589 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span> |
| 406 | | <a name="l00590"></a>00590 } |
| 407 | | <a name="l00591"></a>00591 |
| 408 | | <a name="l00593"></a>00593 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &v) = 0; |
| 409 | | <a name="l00595"></a>00595 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &d) = 0; |
| 410 | | <a name="l00596"></a>00596 |
| 411 | | <a name="l00598"></a>00598 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#4f31c03578a7b9b30d8b1f8c338a37e8" title="Shifts storage position for another time step.">step</a>() = 0; |
| 412 | | <a name="l00599"></a>00599 |
| 413 | | <a name="l00601"></a><a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d">00601</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {}; |
| 414 | | <a name="l00602"></a>00602 |
| 415 | | <a name="l00604"></a><a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc">00604</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#cd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {}; |
| 416 | | <a name="l00605"></a>00605 |
| 417 | | <a name="l00606"></a>00606 }; |
| 418 | | <a name="l00607"></a>00607 |
| 419 | | <a name="l00611"></a><a class="code" href="classbdm_1_1mepdf.html">00611</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a> { |
| 420 | | <a name="l00612"></a>00612 <span class="keyword">public</span>: |
| 421 | | <a name="l00614"></a><a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155">00614</a> <a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>() { } |
| 422 | | <a name="l00615"></a>00615 |
| 423 | | <a name="l00616"></a>00616 <a class="code" href="classbdm_1_1mepdf.html#4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>(<a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> em) { |
| 424 | | <a name="l00617"></a>00617 set_ep(em); |
| 425 | | <a name="l00618"></a>00618 <a class="code" href="classbdm_1_1mpdf.html#7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> = 0; |
| 426 | | <a name="l00619"></a>00619 } |
| 427 | | <a name="l00620"></a>00620 |
| 428 | | <a name="l00622"></a>00622 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#b2b898058169e7ed9a6dc7cd4e1c147c" title="empty">condition</a>(<span class="keyword">const</span> vec &cond); |
| 429 | | <a name="l00623"></a>00623 |
| 430 | | <a name="l00631"></a>00631 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#27ef18a3e3b1b5de02739d1324bf25fb">from_setting</a>(<span class="keyword">const</span> Setting &<span class="keyword">set</span>); |
| 431 | | <a name="l00632"></a>00632 }; |
| 432 | | <a name="l00633"></a>00633 <a class="code" href="user__info_8h.html#4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a>(mepdf); |
| 433 | | <a name="l00634"></a>00634 |
| 434 | | <a name="l00638"></a><a class="code" href="classbdm_1_1compositepdf.html">00638</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1compositepdf.html" title="Chain rule of pdfs - abstract part common for mprod and merger. this abstract class...">compositepdf</a> { |
| 435 | | <a name="l00639"></a>00639 <span class="keyword">protected</span>: |
| 436 | | <a name="l00641"></a><a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a">00641</a> Array<mpdf*> <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>; |
| 437 | | <a name="l00642"></a>00642 <span class="keywordtype">bool</span> owning_mpdfs; |
| 438 | | <a name="l00643"></a>00643 <span class="keyword">public</span>: |
| 439 | | <a name="l00644"></a>00644 <a class="code" href="classbdm_1_1compositepdf.html" title="Chain rule of pdfs - abstract part common for mprod and merger. this abstract class...">compositepdf</a>():<a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>(0){}; |
| 440 | | <a name="l00645"></a>00645 <a class="code" href="classbdm_1_1compositepdf.html" title="Chain rule of pdfs - abstract part common for mprod and merger. this abstract class...">compositepdf</a>(Array<mpdf*> A0, <span class="keywordtype">bool</span> own=<span class="keyword">false</span>){set_elements(A0,own);}; |
| 441 | | <a name="l00646"></a>00646 <span class="keywordtype">void</span> set_elements(Array<mpdf*> A0, <span class="keywordtype">bool</span> own=<span class="keyword">false</span>) {<a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>=A0;owning_mpdfs=own;}; |
| 442 | | <a name="l00648"></a>00648 RV <a class="code" href="classbdm_1_1compositepdf.html#c73d39acc4378eee6a63155c3517d3c9" title="find common rv, flag">getrv</a>(<span class="keywordtype">bool</span> checkoverlap = <span class="keyword">false</span>); |
| 443 | | <a name="l00650"></a>00650 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1compositepdf.html#c71fc2c51f49d797e61f479f543c75ce" title="common rvc of all mpdfs is written to rvc">setrvc</a>(<span class="keyword">const</span> RV &rv, RV &rvc); |
| 444 | | <a name="l00651"></a>00651 ~compositepdf(){<span class="keywordflow">if</span> (owning_mpdfs) <span class="keywordflow">for</span>(<span class="keywordtype">int</span> i=0;i<<a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>.length();i++){<span class="keyword">delete</span> <a class="code" href="classbdm_1_1compositepdf.html#23faf2debc4dde10836393b8c665914a" title="Elements of composition.">mpdfs</a>(i);}}; |
| 445 | | <a name="l00652"></a>00652 }; |
| 446 | | <a name="l00653"></a>00653 |
| 447 | | <a name="l00661"></a><a class="code" href="classbdm_1_1DS.html">00661</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
| 448 | | <a name="l00662"></a>00662 { |
| 449 | | <a name="l00663"></a>00663 <span class="keyword">protected</span>: |
| 450 | | <a name="l00664"></a>00664 <span class="keywordtype">int</span> dtsize; |
| 451 | | <a name="l00665"></a>00665 <span class="keywordtype">int</span> utsize; |
| 452 | | <a name="l00667"></a><a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec">00667</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>; |
| 453 | | <a name="l00669"></a><a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702">00669</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span> |
| 454 | | <a name="l00671"></a><a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867">00671</a> <span class="comment"></span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut; |
| 455 | | <a name="l00672"></a>00672 <span class="keyword">public</span>: |
| 456 | | <a name="l00674"></a><a class="code" href="classbdm_1_1DS.html#bedd82e08ae6686b4b1732a122c2201a">00674</a> <a class="code" href="classbdm_1_1DS.html#bedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() : <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>(), <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>() {}; |
| 457 | | <a name="l00676"></a><a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba">00676</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a>(vec &dt) {it_error(<span class="stringliteral">"abstract class"</span>);}; |
| 458 | | <a name="l00678"></a><a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832">00678</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a>(vec &dt, <span class="keyword">const</span> ivec &indeces) {it_error(<span class="stringliteral">"abstract class"</span>);}; |
| 459 | | <a name="l00680"></a><a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a">00680</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#f5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a>(vec &ut) {it_error(<span class="stringliteral">"abstract class"</span>);}; |
| 460 | | <a name="l00682"></a><a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d">00682</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#6bced13f84f6bf04449728817e049e1d" title="Accepts action variables at specific indeces.">write</a>(vec &ut, <span class="keyword">const</span> ivec &indeces) {it_error(<span class="stringliteral">"abstract class"</span>);}; |
| 461 | | <a name="l00683"></a>00683 |
| 462 | | <a name="l00685"></a>00685 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#9a14c64d881e838ddc3a5617ee8a973b" title="Moves from to , i.e. perfroms the actions and reads response of the system.">step</a>() = 0; |
| 463 | | <a name="l00686"></a>00686 |
| 464 | | <a name="l00688"></a><a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e">00688</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a>(<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) { |
| 465 | | <a name="l00689"></a>00689 it_assert_debug(dtsize == <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize(), <span class="stringliteral">""</span>); |
| 466 | | <a name="l00690"></a>00690 it_assert_debug(utsize == <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>._dsize(), <span class="stringliteral">""</span>); |
| | 345 | <a name="l00462"></a>00462 |
| | 346 | <a name="l00463"></a>00463 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> _rv()<span class="keyword"> const </span>{ |
| | 347 | <a name="l00464"></a>00464 <span class="keywordflow">return</span> ep-><a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>(); |
| | 348 | <a name="l00465"></a>00465 } |
| | 349 | <a name="l00466"></a>00466 RV _rvc() { |
| | 350 | <a name="l00467"></a>00467 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>; |
| | 351 | <a name="l00468"></a>00468 } |
| | 352 | <a name="l00469"></a>00469 |
| | 353 | <a name="l00470"></a>00470 <span class="keywordtype">int</span> dimension()<span class="keyword"> const </span>{ |
| | 354 | <a name="l00471"></a>00471 <span class="keywordflow">return</span> ep->dimension(); |
| | 355 | <a name="l00472"></a>00472 } |
| | 356 | <a name="l00473"></a>00473 <span class="keywordtype">int</span> dimensionc() { |
| | 357 | <a name="l00474"></a>00474 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>; |
| | 358 | <a name="l00475"></a>00475 } |
| | 359 | <a name="l00476"></a>00476 |
| | 360 | <a name="l00486"></a>00486 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a30a0bceb948e287d497c578e371b1667">from_setting</a> (<span class="keyword">const</span> Setting &<span class="keyword">set</span>); |
| | 361 | <a name="l00488"></a>00488 |
| | 362 | <a name="l00491"></a>00491 <span class="keywordtype">void</span> set_rvc (<span class="keyword">const</span> RV &rvc0) { |
| | 363 | <a name="l00492"></a>00492 <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> = rvc0; |
| | 364 | <a name="l00493"></a>00493 } |
| | 365 | <a name="l00494"></a>00494 <span class="keywordtype">void</span> set_rv (<span class="keyword">const</span> RV &rv0) { |
| | 366 | <a name="l00495"></a>00495 ep->set_rv (rv0); |
| | 367 | <a name="l00496"></a>00496 } |
| | 368 | <a name="l00497"></a>00497 <span class="keywordtype">bool</span> isnamed() { |
| | 369 | <a name="l00498"></a>00498 <span class="keywordflow">return</span> (ep->isnamed()) && (<a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> == <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>._dsize()); |
| | 370 | <a name="l00499"></a>00499 } |
| | 371 | <a name="l00501"></a>00501 }; |
| | 372 | <a name="l00502"></a>00502 SHAREDPTR(mpdf); |
| | 373 | <a name="l00503"></a>00503 |
| | 374 | <a name="l00505"></a>00505 <span class="keyword">template</span> <<span class="keyword">class</span> EPDF> |
| | 375 | <a name="l00506"></a><a class="code" href="classbdm_1_1mpdf__internal.html">00506</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf__internal.html" title="Mpdf with internal epdf that is modified by function condition.">mpdf_internal</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a> |
| | 376 | <a name="l00507"></a>00507 { |
| | 377 | <a name="l00508"></a>00508 <span class="keyword">protected</span> : |
| | 378 | <a name="l00510"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468">00510</a> EPDF <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>; |
| | 379 | <a name="l00511"></a>00511 <span class="keyword">public</span>: |
| | 380 | <a name="l00513"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f">00513</a> <a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f" title="constructor">mpdf_internal</a>() : <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>(), <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>() {<a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> (<a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>);} |
| | 381 | <a name="l00514"></a>00514 |
| | 382 | <a name="l00517"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">00517</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (<span class="keyword">const</span> vec &cond) { |
| | 383 | <a name="l00518"></a>00518 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>); |
| | 384 | <a name="l00519"></a>00519 } |
| | 385 | <a name="l00520"></a>00520 |
| | 386 | <a name="l00522"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a">00522</a> EPDF& <a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a" title="access function to iepdf">e</a>() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>;} |
| | 387 | <a name="l00523"></a>00523 |
| | 388 | <a name="l00525"></a>00525 vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">samplecond</a> (<span class="keyword">const</span> vec &cond); |
| | 389 | <a name="l00527"></a>00527 <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">evallogcond</a> (<span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond); |
| | 390 | <a name="l00529"></a>00529 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> (<span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond); |
| | 391 | <a name="l00531"></a>00531 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> (<span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond); |
| | 392 | <a name="l00533"></a>00533 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">samplecond_m</a> (<span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N); |
| | 393 | <a name="l00534"></a>00534 }; |
| | 394 | <a name="l00535"></a>00535 |
| | 395 | <a name="l00561"></a><a class="code" href="classbdm_1_1datalink.html">00561</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> |
| | 396 | <a name="l00562"></a>00562 { |
| | 397 | <a name="l00563"></a>00563 <span class="keyword">protected</span>: |
| | 398 | <a name="l00565"></a><a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c">00565</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>; |
| | 399 | <a name="l00566"></a>00566 |
| | 400 | <a name="l00568"></a><a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045">00568</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>; |
| | 401 | <a name="l00569"></a>00569 |
| | 402 | <a name="l00571"></a><a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb">00571</a> ivec <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>; |
| | 403 | <a name="l00572"></a>00572 |
| | 404 | <a name="l00573"></a>00573 <span class="keyword">public</span>: |
| | 405 | <a name="l00575"></a><a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2">00575</a> <a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a>() : <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> (0), <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> (0) { } |
| | 406 | <a name="l00576"></a>00576 |
| | 407 | <a name="l00578"></a><a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd">00578</a> <a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd" title="Convenience constructor.">datalink</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up) { |
| | 408 | <a name="l00579"></a>00579 <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> (rv, rv_up); |
| | 409 | <a name="l00580"></a>00580 } |
| | 410 | <a name="l00581"></a>00581 |
| | 411 | <a name="l00583"></a>00583 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up); |
| | 412 | <a name="l00584"></a>00584 |
| | 413 | <a name="l00586"></a>00586 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> (<span class="keywordtype">int</span> ds, <span class="keywordtype">int</span> us, <span class="keyword">const</span> ivec &upind); |
| | 414 | <a name="l00587"></a>00587 |
| | 415 | <a name="l00589"></a><a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5">00589</a> vec <a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &quot;Up&quot;.">pushdown</a> (<span class="keyword">const</span> vec &val_up) { |
| | 416 | <a name="l00590"></a>00590 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (<a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>); |
| | 417 | <a name="l00591"></a>00591 <span class="keywordflow">return</span> get_vec (val_up, <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>); |
| | 418 | <a name="l00592"></a>00592 } |
| | 419 | <a name="l00593"></a>00593 |
| | 420 | <a name="l00595"></a><a class="code" href="classbdm_1_1datalink.html#a610e966f2edb1fcd6a5b28267c571793">00595</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#a610e966f2edb1fcd6a5b28267c571793" title="Fill val of &quot;Up&quot; by my pieces.">pushup</a> (vec &val_up, <span class="keyword">const</span> vec &val) { |
| | 421 | <a name="l00596"></a>00596 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (<a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">"Wrong val"</span>); |
| | 422 | <a name="l00597"></a>00597 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (<a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>); |
| | 423 | <a name="l00598"></a>00598 set_subvector (val_up, <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>, val); |
| | 424 | <a name="l00599"></a>00599 } |
| | 425 | <a name="l00600"></a>00600 }; |
| | 426 | <a name="l00601"></a>00601 |
| | 427 | <a name="l00603"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00603</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> |
| | 428 | <a name="l00604"></a>00604 { |
| | 429 | <a name="l00605"></a>00605 <span class="keyword">protected</span>: |
| | 430 | <a name="l00607"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9">00607</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>; |
| | 431 | <a name="l00608"></a>00608 |
| | 432 | <a name="l00610"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783">00610</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>; |
| | 433 | <a name="l00611"></a>00611 |
| | 434 | <a name="l00613"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc">00613</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>; |
| | 435 | <a name="l00614"></a>00614 |
| | 436 | <a name="l00615"></a>00615 <span class="keyword">public</span>: |
| | 437 | <a name="l00617"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6">00617</a> <a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6" title="Constructor.">datalink_m2e</a>() : <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> (0) { } |
| | 438 | <a name="l00618"></a>00618 |
| | 439 | <a name="l00620"></a>00620 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#aadd918bf877c48714cff51ee4ad989b0" title="Set connection between vectors.">set_connection</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up); |
| | 440 | <a name="l00621"></a>00621 |
| | 441 | <a name="l00623"></a>00623 vec <a class="code" href="classbdm_1_1datalink__m2e.html#a7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> (<span class="keyword">const</span> vec &val_up); |
| | 442 | <a name="l00624"></a>00624 |
| | 443 | <a name="l00626"></a>00626 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#ab29bc3c7bf2a1d87e77ccaa793d097d5" title="Copy corresponding values to Up.condition.">pushup_cond</a> (vec &val_up, <span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond); |
| | 444 | <a name="l00627"></a>00627 }; |
| | 445 | <a name="l00628"></a>00628 |
| | 446 | <a name="l00631"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00631</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a> |
| | 447 | <a name="l00632"></a>00632 { |
| | 448 | <a name="l00633"></a>00633 <span class="keyword">protected</span>: |
| | 449 | <a name="l00635"></a><a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d">00635</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>; |
| | 450 | <a name="l00637"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5">00637</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>; |
| | 451 | <a name="l00638"></a>00638 |
| | 452 | <a name="l00639"></a>00639 <span class="keyword">public</span>: |
| | 453 | <a name="l00641"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287">00641</a> <a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {}; |
| | 454 | <a name="l00643"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4">00643</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">set_connection</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc_up) { |
| | 455 | <a name="l00644"></a>00644 <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">datalink_m2e::set_connection</a> (rv, rvc, rv_up); |
| | 456 | <a name="l00645"></a>00645 <span class="comment">//establish c2c connection</span> |
| | 457 | <a name="l00646"></a>00646 rvc.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> (rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>); |
| | 458 | <a name="l00647"></a>00647 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (<a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>.length() + <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>.length() == <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">"cond is not fully given"</span>); |
| | 459 | <a name="l00648"></a>00648 } |
| | 460 | <a name="l00649"></a>00649 |
| | 461 | <a name="l00651"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90">00651</a> vec <a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &quot;Up&quot;.">get_cond</a> (<span class="keyword">const</span> vec &val_up, <span class="keyword">const</span> vec &cond_up) { |
| | 462 | <a name="l00652"></a>00652 vec tmp (<a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>); |
| | 463 | <a name="l00653"></a>00653 set_subvector (tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, val_up (<a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>)); |
| | 464 | <a name="l00654"></a>00654 set_subvector (tmp, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, cond_up (<a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>)); |
| | 465 | <a name="l00655"></a>00655 <span class="keywordflow">return</span> tmp; |
| | 466 | <a name="l00656"></a>00656 } |
| | 467 | <a name="l00658"></a>00658 |
| | 468 | <a name="l00659"></a>00659 }; |
| | 469 | <a name="l00660"></a>00660 |
| | 470 | <a name="l00666"></a><a class="code" href="classbdm_1_1logger.html">00666</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
| | 471 | <a name="l00667"></a>00667 { |
| | 472 | <a name="l00668"></a>00668 <span class="keyword">protected</span>: |
| | 473 | <a name="l00670"></a><a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f">00670</a> Array<RV> <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>; |
| | 474 | <a name="l00672"></a><a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02">00672</a> Array<string> <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>; |
| | 475 | <a name="l00673"></a>00673 <span class="keyword">public</span>: |
| | 476 | <a name="l00675"></a><a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf">00675</a> <a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a>() : <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> (0), <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> (0) {} |
| | 477 | <a name="l00676"></a>00676 |
| | 478 | <a name="l00679"></a><a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">00679</a> <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keywordtype">string</span> prefix = <span class="stringliteral">""</span>) { |
| | 479 | <a name="l00680"></a>00680 <span class="keywordtype">int</span> id; |
| | 480 | <a name="l00681"></a>00681 <span class="keywordflow">if</span> (rv._dsize() > 0) { |
| | 481 | <a name="l00682"></a>00682 <span class="keywordtype">id</span> = <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length(); |
| | 482 | <a name="l00683"></a>00683 <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> = concat (<a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix); <span class="comment">// diff</span> |
| | 483 | <a name="l00684"></a>00684 <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length (<span class="keywordtype">id</span> + 1, <span class="keyword">true</span>); |
| | 484 | <a name="l00685"></a>00685 <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> (<span class="keywordtype">id</span>) = rv; |
| | 485 | <a name="l00686"></a>00686 } <span class="keywordflow">else</span> { |
| | 486 | <a name="l00687"></a>00687 <span class="keywordtype">id</span> = -1; |
| | 487 | <a name="l00688"></a>00688 } |
| | 488 | <a name="l00689"></a>00689 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span> |
| | 489 | <a name="l00690"></a>00690 } |
| 468 | | <a name="l00692"></a>00692 <a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a> = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <span class="stringliteral">""</span>); |
| 469 | | <a name="l00693"></a>00693 L_ut = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(<a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">""</span>); |
| 470 | | <a name="l00694"></a>00694 } |
| 471 | | <a name="l00696"></a><a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf">00696</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#e03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a>(<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) { |
| 472 | | <a name="l00697"></a>00697 vec tmp(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize() + <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>._dsize()); |
| 473 | | <a name="l00698"></a>00698 <a class="code" href="classbdm_1_1DS.html#c1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a>(tmp); |
| 474 | | <a name="l00699"></a>00699 <span class="comment">// d is first in getdata</span> |
| 475 | | <a name="l00700"></a>00700 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1DS.html#b4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, tmp.left(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize())); |
| 476 | | <a name="l00701"></a>00701 <span class="comment">// u follows after d in getdata</span> |
| 477 | | <a name="l00702"></a>00702 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(L_ut, tmp.mid(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize(), <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>._dsize())); |
| 478 | | <a name="l00703"></a>00703 } |
| 479 | | <a name="l00705"></a><a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660">00705</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ed2113851294ed96abe60fc3f05aa660" title="access function">_drv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> concat(<a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>);} |
| 480 | | <a name="l00707"></a><a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33">00707</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1DS.html#a6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>;} |
| 481 | | <a name="l00709"></a><a class="code" href="classbdm_1_1DS.html#821297dfd839d68691324f024e57252f">00709</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#821297dfd839d68691324f024e57252f" title="set random rvariables">set_drv</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &drv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &urv) { <a class="code" href="classbdm_1_1DS.html#d8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = drv; <a class="code" href="classbdm_1_1DS.html#9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv;} |
| 482 | | <a name="l00710"></a>00710 }; |
| 483 | | <a name="l00711"></a>00711 |
| 484 | | <a name="l00733"></a><a class="code" href="classbdm_1_1BM.html">00733</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
| 485 | | <a name="l00734"></a>00734 { |
| 486 | | <a name="l00735"></a>00735 <span class="keyword">protected</span>: |
| 487 | | <a name="l00737"></a><a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed">00737</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; |
| 488 | | <a name="l00739"></a><a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a">00739</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; |
| 489 | | <a name="l00741"></a><a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee">00741</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>; |
| 490 | | <a name="l00742"></a>00742 <span class="keyword">public</span>: |
| 491 | | <a name="l00745"></a>00745 |
| 492 | | <a name="l00746"></a>00746 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>() : <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>(0), <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>(true), <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(4), <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(4) { |
| 493 | | <a name="l00747"></a>00747 <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> = -1;<span class="comment">/*empty IDs*/</span> |
| 494 | | <a name="l00748"></a>00748 <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> = 0; |
| 495 | | <a name="l00749"></a>00749 <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(0) = 1;<span class="comment">/*log only mean*/</span> |
| 496 | | <a name="l00750"></a>00750 }; |
| 497 | | <a name="l00751"></a>00751 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &B) : <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>(B.<a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>(B.<a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>), <a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>(B.<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>) {} |
| 498 | | <a name="l00754"></a><a class="code" href="classbdm_1_1BM.html#40f01563651c1e4fe926189e41a6b8ab">00754</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#40f01563651c1e4fe926189e41a6b8ab">_copy_</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> NULL;}; |
| 499 | | <a name="l00756"></a>00756 |
| 500 | | <a name="l00759"></a>00759 |
| 501 | | <a name="l00763"></a>00763 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a>(<span class="keyword">const</span> vec &dt) = 0; |
| 502 | | <a name="l00765"></a>00765 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a>(<span class="keyword">const</span> mat &Dt); |
| 503 | | <a name="l00768"></a><a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">00768</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a>(<span class="keyword">const</span> vec &dt)<span class="keyword"> const </span>{it_error(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> 0.0;} |
| 504 | | <a name="l00770"></a><a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae">00770</a> vec <a class="code" href="classbdm_1_1BM.html#0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a>(<span class="keyword">const</span> mat &dt)<span class="keyword"> const </span>{vec tmp(dt.cols()); <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < dt.cols(); i++) {tmp(i) = <a class="code" href="classbdm_1_1BM.html#50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a>(dt.get_col(i));} <span class="keywordflow">return</span> tmp;} |
| 505 | | <a name="l00771"></a>00771 |
| 506 | | <a name="l00773"></a><a class="code" href="classbdm_1_1BM.html#688d7a2aced1e06aa1c468d73a9e5eba">00773</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> NULL;}; |
| 507 | | <a name="l00775"></a><a class="code" href="classbdm_1_1BM.html#598b25e3f3d96a5bc00a5faeb5b3c912">00775</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling some dependencies.">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs a conditional density 1-step ahead predictor.">predictor</a>()<span class="keyword"> const </span>{it_error(<span class="stringliteral">"Not implemented"</span>); <span class="keywordflow">return</span> NULL;}; |
| 508 | | <a name="l00777"></a>00777 |
| 509 | | <a name="l00782"></a>00782 |
| 510 | | <a name="l00784"></a><a class="code" href="classbdm_1_1BM.html#de95c590d650b2db423d53992f0906cb">00784</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rvc; |
| 511 | | <a name="l00786"></a><a class="code" href="classbdm_1_1BM.html#b5e8e016be16e4029c789063cb3f3b33">00786</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1BM.html#b5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{<span class="keywordflow">return</span> rvc;} |
| 512 | | <a name="l00787"></a>00787 |
| 513 | | <a name="l00789"></a><a class="code" href="classbdm_1_1BM.html#6799f4b16a6a59ed58b1d0d6e17116f4">00789</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a>(<span class="keyword">const</span> vec &val) {it_error(<span class="stringliteral">"Not implemented!"</span>);}; |
| 514 | | <a name="l00790"></a>00790 |
| 515 | | <a name="l00792"></a>00792 |
| | 491 | <a name="l00693"></a><a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309">00693</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &v) {<a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a>(<span class="stringliteral">"Not implemented"</span>);}; |
| | 492 | <a name="l00695"></a><a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6">00695</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6" title="log this double">logit</a> (<span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &d) {<a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a>(<span class="stringliteral">"Not implemented"</span>);}; |
| | 493 | <a name="l00696"></a>00696 |
| | 494 | <a name="l00698"></a><a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99">00698</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99" title="Shifts storage position for another time step.">step</a>() {<a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a>(<span class="stringliteral">"Not implemneted"</span>);}; |
| | 495 | <a name="l00699"></a>00699 |
| | 496 | <a name="l00701"></a><a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d">00701</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {}; |
| | 497 | <a name="l00702"></a>00702 |
| | 498 | <a name="l00704"></a><a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc">00704</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {}; |
| | 499 | <a name="l00705"></a>00705 |
| | 500 | <a name="l00706"></a>00706 }; |
| | 501 | <a name="l00707"></a>00707 |
| | 502 | <a name="l00711"></a><a class="code" href="classbdm_1_1mepdf.html">00711</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a> |
| | 503 | <a name="l00712"></a>00712 { |
| | 504 | <a name="l00714"></a>00714 <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> iepdf; |
| | 505 | <a name="l00715"></a>00715 <span class="keyword">public</span>: |
| | 506 | <a name="l00717"></a><a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155">00717</a> <a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>() { } |
| | 507 | <a name="l00719"></a><a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c">00719</a> <a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c" title="Set internal shared pointer.">mepdf</a> (<a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> em) { |
| | 508 | <a name="l00720"></a>00720 iepdf = em; |
| | 509 | <a name="l00721"></a>00721 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> (*iepdf.<a class="code" href="classbdm_1_1shared__ptr.html#a37ebcfb6750dd7b5630f1d2354c07a96">get</a>()); |
| | 510 | <a name="l00722"></a>00722 <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> = 0; |
| | 511 | <a name="l00723"></a>00723 } |
| | 512 | <a name="l00724"></a>00724 |
| | 513 | <a name="l00726"></a><a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e">00726</a> vec <a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e" title="empty">samplecond</a>(<span class="keyword">const</span> vec &cond){<span class="keywordflow">return</span> iepdf->sample();} |
| | 514 | <a name="l00727"></a><a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b">00727</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a>(<span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond){<span class="keywordflow">return</span> iepdf->evallog(val);} |
| | 515 | <a name="l00728"></a>00728 |
| | 516 | <a name="l00736"></a>00736 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#a27ef18a3e3b1b5de02739d1324bf25fb">from_setting</a> (<span class="keyword">const</span> Setting &<span class="keyword">set</span>); |
| | 517 | <a name="l00737"></a>00737 }; |
| | 518 | <a name="l00738"></a>00738 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> (mepdf); |
| | 519 | <a name="l00739"></a>00739 SHAREDPTR (mepdf); |
| | 520 | <a name="l00740"></a>00740 |
| | 521 | <a name="l00742"></a>00742 RV get_composite_rv ( <span class="keyword">const</span> Array<shared_ptr<mpdf> > &mpdfs, <span class="keywordtype">bool</span> checkoverlap = <span class="keyword">false</span> ); |
| | 522 | <a name="l00743"></a>00743 |
| | 523 | <a name="l00751"></a><a class="code" href="classbdm_1_1DS.html">00751</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
| | 524 | <a name="l00752"></a>00752 { |
| | 525 | <a name="l00753"></a>00753 <span class="keyword">protected</span>: |
| | 526 | <a name="l00754"></a>00754 <span class="keywordtype">int</span> dtsize; |
| | 527 | <a name="l00755"></a>00755 <span class="keywordtype">int</span> utsize; |
| | 528 | <a name="l00757"></a><a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec">00757</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>; |
| | 529 | <a name="l00759"></a><a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702">00759</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span> |
| | 530 | <a name="l00761"></a><a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867">00761</a> <span class="comment"></span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut; |
| | 531 | <a name="l00762"></a>00762 <span class="keyword">public</span>: |
| | 532 | <a name="l00764"></a><a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a">00764</a> <a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() : <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>() {}; |
| | 533 | <a name="l00765"></a>00765 |
| | 534 | <a name="l00767"></a><a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba">00767</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> (vec &dt) { |
| | 535 | <a name="l00768"></a>00768 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"abstract class"</span>); |
| | 536 | <a name="l00769"></a>00769 } |
| | 537 | <a name="l00770"></a>00770 |
| | 538 | <a name="l00772"></a><a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832">00772</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a> (vec &dt, <span class="keyword">const</span> ivec &indeces) { |
| | 539 | <a name="l00773"></a>00773 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"abstract class"</span>); |
| | 540 | <a name="l00774"></a>00774 } |
| | 541 | <a name="l00775"></a>00775 |
| | 542 | <a name="l00777"></a><a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a">00777</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> (vec &ut) { |
| | 543 | <a name="l00778"></a>00778 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"abstract class"</span>); |
| | 544 | <a name="l00779"></a>00779 } |
| | 545 | <a name="l00780"></a>00780 |
| | 546 | <a name="l00782"></a><a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d">00782</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d" title="Accepts action variables at specific indeces.">write</a> (vec &ut, <span class="keyword">const</span> ivec &indeces) { |
| | 547 | <a name="l00783"></a>00783 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"abstract class"</span>); |
| | 548 | <a name="l00784"></a>00784 } |
| | 549 | <a name="l00785"></a>00785 |
| | 550 | <a name="l00787"></a>00787 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a9a14c64d881e838ddc3a5617ee8a973b" title="Moves from to , i.e. perfroms the actions and reads response of the system.">step</a>() = 0; |
| | 551 | <a name="l00788"></a>00788 |
| | 552 | <a name="l00790"></a><a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e">00790</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) { |
| | 553 | <a name="l00791"></a>00791 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (dtsize == <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize(), <span class="stringliteral">"invalid DS: dtsize different from Drv"</span>); |
| | 554 | <a name="l00792"></a>00792 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (utsize == <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>._dsize(), <span class="stringliteral">"invalid DS: utsize different from Urv"</span>); |
| 517 | | <a name="l00796"></a>00796 |
| 518 | | <a name="l00797"></a>00797 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& _drv()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;} |
| 519 | | <a name="l00798"></a>00798 <span class="keywordtype">void</span> set_drv(<span class="keyword">const</span> RV &rv) {<a class="code" href="classbdm_1_1BM.html#c400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> = rv;} |
| 520 | | <a name="l00799"></a>00799 <span class="keywordtype">void</span> set_rv(<span class="keyword">const</span> RV &rv) {<span class="keyword">const_cast<</span>epdf&<span class="keyword">></span>(posterior()).set_rv(rv);} |
| 521 | | <a name="l00800"></a>00800 <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;} |
| 522 | | <a name="l00801"></a>00801 <span class="keywordtype">void</span> set_evalll(<span class="keywordtype">bool</span> evl0) {<a class="code" href="classbdm_1_1BM.html#faff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> = evl0;} |
| 523 | | <a name="l00802"></a>00802 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf& posterior() <span class="keyword">const</span> = 0; |
| 524 | | <a name="l00803"></a>00803 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf* _e() <span class="keyword">const</span> = 0; |
| 525 | | <a name="l00805"></a>00805 |
| 526 | | <a name="l00808"></a>00808 |
| 527 | | <a name="l00810"></a><a class="code" href="classbdm_1_1BM.html#adb539fa2585c8a2a91c54e5aebf330e">00810</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#adb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &quot;logbounds,logll&quot;.">set_options</a>(<span class="keyword">const</span> <span class="keywordtype">string</span> &opt) { |
| 528 | | <a name="l00811"></a>00811 <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(0) = 1; |
| 529 | | <a name="l00812"></a>00812 <span class="keywordflow">if</span> (opt.find(<span class="stringliteral">"logbounds"</span>) != string::npos) {<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(1) = 1; <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(2) = 1;} |
| 530 | | <a name="l00813"></a>00813 <span class="keywordflow">if</span> (opt.find(<span class="stringliteral">"logll"</span>) != string::npos) {<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(3) = 1;} |
| 531 | | <a name="l00814"></a>00814 } |
| 532 | | <a name="l00816"></a><a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca">00816</a> ivec <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>; |
| 533 | | <a name="l00817"></a>00817 |
| 534 | | <a name="l00819"></a><a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207">00819</a> ivec <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>; |
| 535 | | <a name="l00821"></a><a class="code" href="classbdm_1_1BM.html#2298ca6af9b13a78a4c9e18ab43f1827">00821</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a>(<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L, <span class="keyword">const</span> <span class="keywordtype">string</span> &name = <span class="stringliteral">""</span>) { |
| 536 | | <a name="l00822"></a>00822 <span class="comment">// internal</span> |
| 537 | | <a name="l00823"></a>00823 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r; |
| 538 | | <a name="l00824"></a>00824 <span class="keywordflow">if</span> (posterior().isnamed()) {r = posterior().<a class="code" href="classbdm_1_1epdf.html#a4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();} |
| 539 | | <a name="l00825"></a>00825 <span class="keywordflow">else</span> {r = <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>(<span class="stringliteral">"est"</span>, posterior().dimension());}; |
| 540 | | <a name="l00826"></a>00826 |
| 541 | | <a name="l00827"></a>00827 <span class="comment">// Add mean value</span> |
| 542 | | <a name="l00828"></a>00828 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(0)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(0) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(r, name + <span class="stringliteral">"mean_"</span>); |
| 543 | | <a name="l00829"></a>00829 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(1)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(1) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(r, name + <span class="stringliteral">"lb_"</span>); |
| 544 | | <a name="l00830"></a>00830 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(2)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(2) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(r, name + <span class="stringliteral">"ub_"</span>); |
| 545 | | <a name="l00831"></a>00831 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(3)) <a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(3) = L.<a class="code" href="classbdm_1_1logger.html#47aa3b098a81d02a8ffaea2c9fa09ac7">add</a>(<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>(<span class="stringliteral">"ll"</span>, 1), name); <span class="comment">//TODO: "local" RV</span> |
| 546 | | <a name="l00832"></a>00832 } |
| 547 | | <a name="l00833"></a>00833 <span class="keyword">virtual</span> <span class="keywordtype">void</span> logit(<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) { |
| 548 | | <a name="l00834"></a>00834 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(0), posterior().mean()); |
| 549 | | <a name="l00835"></a>00835 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(1) || <a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(2)) { <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span> |
| 550 | | <a name="l00836"></a>00836 vec ub, lb; |
| 551 | | <a name="l00837"></a>00837 posterior().<a class="code" href="classbdm_1_1epdf.html#0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a>(lb, ub); |
| 552 | | <a name="l00838"></a>00838 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(1), lb); |
| 553 | | <a name="l00839"></a>00839 L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(2), ub); |
| 554 | | <a name="l00840"></a>00840 } |
| 555 | | <a name="l00841"></a>00841 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>(3)) L.<a class="code" href="classbdm_1_1logger.html#397c014b0aaf3581516e2a105d26a5c9" title="log this vector">logit</a>(<a class="code" href="classbdm_1_1BM.html#109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>(3), <a class="code" href="classbdm_1_1BM.html#4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>); |
| 556 | | <a name="l00842"></a>00842 } |
| 557 | | <a name="l00844"></a>00844 }; |
| 558 | | <a name="l00845"></a>00845 |
| 559 | | <a name="l00846"></a>00846 |
| 560 | | <a name="l00847"></a>00847 }; <span class="comment">//namespace</span> |
| 561 | | <a name="l00848"></a>00848 <span class="preprocessor">#endif // BDMBASE_H</span> |
| | 556 | <a name="l00794"></a>00794 <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a> = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <span class="stringliteral">""</span>); |
| | 557 | <a name="l00795"></a>00795 L_ut = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">""</span>); |
| | 558 | <a name="l00796"></a>00796 } |
| | 559 | <a name="l00798"></a><a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf">00798</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) { |
| | 560 | <a name="l00799"></a>00799 vec tmp (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize() + <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>._dsize()); |
| | 561 | <a name="l00800"></a>00800 <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> (tmp); |
| | 562 | <a name="l00801"></a>00801 <span class="comment">// d is first in getdata</span> |
| | 563 | <a name="l00802"></a>00802 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, tmp.left (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize())); |
| | 564 | <a name="l00803"></a>00803 <span class="comment">// u follows after d in getdata</span> |
| | 565 | <a name="l00804"></a>00804 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (L_ut, tmp.mid (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>._dsize())); |
| | 566 | <a name="l00805"></a>00805 } |
| | 567 | <a name="l00807"></a><a class="code" href="classbdm_1_1DS.html#aed2113851294ed96abe60fc3f05aa660">00807</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#aed2113851294ed96abe60fc3f05aa660" title="access function">_drv</a>()<span class="keyword"> const </span>{ |
| | 568 | <a name="l00808"></a>00808 <span class="keywordflow">return</span> concat (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>); |
| | 569 | <a name="l00809"></a>00809 } |
| | 570 | <a name="l00811"></a><a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33">00811</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{ |
| | 571 | <a name="l00812"></a>00812 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; |
| | 572 | <a name="l00813"></a>00813 } |
| | 573 | <a name="l00815"></a><a class="code" href="classbdm_1_1DS.html#a821297dfd839d68691324f024e57252f">00815</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a821297dfd839d68691324f024e57252f" title="set random rvariables">set_drv</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &drv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &urv) { |
| | 574 | <a name="l00816"></a>00816 <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = drv; |
| | 575 | <a name="l00817"></a>00817 <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv; |
| | 576 | <a name="l00818"></a>00818 } |
| | 577 | <a name="l00819"></a>00819 }; |
| | 578 | <a name="l00820"></a>00820 |
| | 579 | <a name="l00842"></a><a class="code" href="classbdm_1_1BM.html">00842</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> |
| | 580 | <a name="l00843"></a>00843 { |
| | 581 | <a name="l00844"></a>00844 <span class="keyword">protected</span>: |
| | 582 | <a name="l00846"></a><a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed">00846</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; |
| | 583 | <a name="l00848"></a><a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a">00848</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; |
| | 584 | <a name="l00850"></a><a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee">00850</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>; |
| | 585 | <a name="l00851"></a>00851 <span class="keyword">public</span>: |
| | 586 | <a name="l00854"></a>00854 |
| | 587 | <a name="l00855"></a>00855 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>() : <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> (0), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> (true), <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (4), <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (4) { |
| | 588 | <a name="l00856"></a>00856 <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> = -1;<span class="comment">/*empty IDs*/</span> |
| | 589 | <a name="l00857"></a>00857 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> = 0; |
| | 590 | <a name="l00858"></a>00858 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (0) = 1; <span class="comment">/*log only mean*/</span> |
| | 591 | <a name="l00859"></a>00859 }; |
| | 592 | <a name="l00860"></a>00860 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &B) : <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> (B.<a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> (B.<a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> (B.<a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>) {} |
| | 593 | <a name="l00863"></a><a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">00863</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">_copy_</a>()<span class="keyword"> const </span>{ |
| | 594 | <a name="l00864"></a>00864 <span class="keywordflow">return</span> NULL; |
| | 595 | <a name="l00865"></a>00865 }; |
| | 596 | <a name="l00867"></a>00867 |
| | 597 | <a name="l00870"></a>00870 |
| | 598 | <a name="l00874"></a>00874 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> (<span class="keyword">const</span> vec &dt) = 0; |
| | 599 | <a name="l00876"></a>00876 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> (<span class="keyword">const</span> mat &Dt); |
| | 600 | <a name="l00879"></a><a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">00879</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> (<span class="keyword">const</span> vec &dt)<span class="keyword"> const </span>{ |
| | 601 | <a name="l00880"></a>00880 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>); |
| | 602 | <a name="l00881"></a>00881 <span class="keywordflow">return</span> 0.0; |
| | 603 | <a name="l00882"></a>00882 } |
| | 604 | <a name="l00883"></a>00883 |
| | 605 | <a name="l00885"></a><a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae">00885</a> vec <a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> (<span class="keyword">const</span> mat &dt)<span class="keyword"> const </span>{ |
| | 606 | <a name="l00886"></a>00886 vec tmp (dt.cols()); |
| | 607 | <a name="l00887"></a>00887 <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < dt.cols(); i++) { |
| | 608 | <a name="l00888"></a>00888 tmp (i) = <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> (dt.get_col (i)); |
| | 609 | <a name="l00889"></a>00889 } |
| | 610 | <a name="l00890"></a>00890 <span class="keywordflow">return</span> tmp; |
| | 611 | <a name="l00891"></a>00891 } |
| | 612 | <a name="l00892"></a>00892 |
| | 613 | <a name="l00894"></a><a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba">00894</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a>()<span class="keyword"> const </span>{ |
| | 614 | <a name="l00895"></a>00895 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>); |
| | 615 | <a name="l00896"></a>00896 <span class="keywordflow">return</span> NULL; |
| | 616 | <a name="l00897"></a>00897 }; |
| | 617 | <a name="l00899"></a><a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912">00899</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs conditional density of 1-step ahead predictor .">predictor</a>()<span class="keyword"> const </span>{ |
| | 618 | <a name="l00900"></a>00900 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>); |
| | 619 | <a name="l00901"></a>00901 <span class="keywordflow">return</span> NULL; |
| | 620 | <a name="l00902"></a>00902 }; |
| | 621 | <a name="l00904"></a>00904 |
| | 622 | <a name="l00909"></a>00909 |
| | 623 | <a name="l00911"></a><a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb">00911</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>; |
| | 624 | <a name="l00913"></a><a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33">00913</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{ |
| | 625 | <a name="l00914"></a>00914 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>; |
| | 626 | <a name="l00915"></a>00915 } |
| | 627 | <a name="l00916"></a>00916 |
| | 628 | <a name="l00918"></a><a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4">00918</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a> (<span class="keyword">const</span> vec &val) { |
| | 629 | <a name="l00919"></a>00919 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented!"</span>); |
| | 630 | <a name="l00920"></a>00920 } |
| | 631 | <a name="l00921"></a>00921 |
| | 632 | <a name="l00923"></a>00923 |
| | 633 | <a name="l00924"></a>00924 |
| | 634 | <a name="l00927"></a>00927 |
| | 635 | <a name="l00928"></a>00928 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& _drv()<span class="keyword"> const </span>{ |
| | 636 | <a name="l00929"></a>00929 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; |
| | 637 | <a name="l00930"></a>00930 } |
| | 638 | <a name="l00931"></a>00931 <span class="keywordtype">void</span> set_drv (<span class="keyword">const</span> RV &rv) { |
| | 639 | <a name="l00932"></a>00932 <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> = rv; |
| | 640 | <a name="l00933"></a>00933 } |
| | 641 | <a name="l00934"></a>00934 <span class="keywordtype">void</span> set_rv (<span class="keyword">const</span> RV &rv) { |
| | 642 | <a name="l00935"></a>00935 <span class="keyword">const_cast<</span>epdf&<span class="keyword">></span> (posterior()).set_rv (rv); |
| | 643 | <a name="l00936"></a>00936 } |
| | 644 | <a name="l00937"></a>00937 <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{ |
| | 645 | <a name="l00938"></a>00938 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; |
| | 646 | <a name="l00939"></a>00939 } |
| | 647 | <a name="l00940"></a>00940 <span class="keywordtype">void</span> set_evalll (<span class="keywordtype">bool</span> evl0) { |
| | 648 | <a name="l00941"></a>00941 <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> = evl0; |
| | 649 | <a name="l00942"></a>00942 } |
| | 650 | <a name="l00943"></a>00943 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf& posterior() <span class="keyword">const</span> = 0; |
| | 651 | <a name="l00945"></a>00945 |
| | 652 | <a name="l00948"></a>00948 |
| | 653 | <a name="l00950"></a><a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e">00950</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &quot;logbounds,logll&quot;.">set_options</a> (<span class="keyword">const</span> <span class="keywordtype">string</span> &opt) { |
| | 654 | <a name="l00951"></a>00951 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (0) = 1; |
| | 655 | <a name="l00952"></a>00952 <span class="keywordflow">if</span> (opt.find (<span class="stringliteral">"logbounds"</span>) != string::npos) { |
| | 656 | <a name="l00953"></a>00953 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (1) = 1; |
| | 657 | <a name="l00954"></a>00954 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (2) = 1; |
| | 658 | <a name="l00955"></a>00955 } |
| | 659 | <a name="l00956"></a>00956 <span class="keywordflow">if</span> (opt.find (<span class="stringliteral">"logll"</span>) != string::npos) { |
| | 660 | <a name="l00957"></a>00957 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (3) = 1; |
| | 661 | <a name="l00958"></a>00958 } |
| | 662 | <a name="l00959"></a>00959 } |
| | 663 | <a name="l00961"></a><a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca">00961</a> ivec <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>; |
| | 664 | <a name="l00962"></a>00962 |
| | 665 | <a name="l00964"></a><a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207">00964</a> ivec <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>; |
| | 666 | <a name="l00966"></a><a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827">00966</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a> (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L, <span class="keyword">const</span> <span class="keywordtype">string</span> &name = <span class="stringliteral">""</span>) { |
| | 667 | <a name="l00967"></a>00967 <span class="comment">// internal</span> |
| | 668 | <a name="l00968"></a>00968 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r; |
| | 669 | <a name="l00969"></a>00969 <span class="keywordflow">if</span> (posterior().isnamed()) { |
| | 670 | <a name="l00970"></a>00970 r = posterior().<a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>(); |
| | 671 | <a name="l00971"></a>00971 } <span class="keywordflow">else</span> { |
| | 672 | <a name="l00972"></a>00972 r = <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> (<span class="stringliteral">"est"</span>, posterior().dimension()); |
| | 673 | <a name="l00973"></a>00973 }; |
| | 674 | <a name="l00974"></a>00974 |
| | 675 | <a name="l00975"></a>00975 <span class="comment">// Add mean value</span> |
| | 676 | <a name="l00976"></a>00976 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (0)) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (0) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (r, name + <span class="stringliteral">"mean_"</span>); |
| | 677 | <a name="l00977"></a>00977 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (1)) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (1) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (r, name + <span class="stringliteral">"lb_"</span>); |
| | 678 | <a name="l00978"></a>00978 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (2)) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (2) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (r, name + <span class="stringliteral">"ub_"</span>); |
| | 679 | <a name="l00979"></a>00979 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (3)) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (3) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> (<span class="stringliteral">"ll"</span>, 1), name); <span class="comment">//TODO: "local" RV</span> |
| | 680 | <a name="l00980"></a>00980 } |
| | 681 | <a name="l00981"></a>00981 <span class="keyword">virtual</span> <span class="keywordtype">void</span> logit (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) { |
| | 682 | <a name="l00982"></a>00982 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (0), posterior().mean()); |
| | 683 | <a name="l00983"></a>00983 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (1) || <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (2)) { <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span> |
| | 684 | <a name="l00984"></a>00984 vec ub, lb; |
| | 685 | <a name="l00985"></a>00985 posterior().<a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> (lb, ub); |
| | 686 | <a name="l00986"></a>00986 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (1), lb); |
| | 687 | <a name="l00987"></a>00987 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (2), ub); |
| | 688 | <a name="l00988"></a>00988 } |
| | 689 | <a name="l00989"></a>00989 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (3)) L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (3), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>); |
| | 690 | <a name="l00990"></a>00990 } |
| | 691 | <a name="l00992"></a><a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de">00992</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de" title="This method arrange instance properties according the data stored in the Setting...">from_setting</a> (<span class="keyword">const</span> Setting &<span class="keyword">set</span>){ |
| | 692 | <a name="l00993"></a>00993 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr<RV></a> r = UI::build<RV> ( <span class="keyword">set</span>, <span class="stringliteral">"drv"</span>, UI::optional ); |
| | 693 | <a name="l00994"></a>00994 <span class="keywordflow">if</span> (r) { |
| | 694 | <a name="l00995"></a>00995 set_drv (*r); |
| | 695 | <a name="l00996"></a>00996 } |
| | 696 | <a name="l00997"></a>00997 <span class="keywordtype">string</span> opt; |
| | 697 | <a name="l00998"></a>00998 <span class="keywordflow">if</span>(!<a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a>(opt, <span class="keyword">set</span>, <span class="stringliteral">"options"</span>, UI::optional)) { |
| | 698 | <a name="l00999"></a>00999 <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &quot;logbounds,logll&quot;.">set_options</a>(opt); |
| | 699 | <a name="l01000"></a>01000 } |
| | 700 | <a name="l01001"></a>01001 } |
| | 701 | <a name="l01002"></a>01002 |
| | 702 | <a name="l01003"></a>01003 }; |
| | 703 | <a name="l01004"></a>01004 |
| | 704 | <a name="l01005"></a>01005 <span class="keyword">typedef</span> Array<shared_ptr<epdf> > epdf_array; |
| | 705 | <a name="l01006"></a>01006 |
| | 706 | <a name="l01007"></a>01007 <span class="keyword">typedef</span> Array<shared_ptr<mpdf> > mpdf_array; |
| | 707 | <a name="l01008"></a>01008 |
| | 708 | <a name="l01009"></a>01009 <span class="keyword">template</span><<span class="keyword">class</span> EPDF> |
| | 709 | <a name="l01010"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930">01010</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">mpdf_internal<EPDF>::samplecond</a> (<span class="keyword">const</span> vec &cond) |
| | 710 | <a name="l01011"></a>01011 { |
| | 711 | <a name="l01012"></a>01012 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond); |
| | 712 | <a name="l01013"></a>01013 vec temp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample(); |
| | 713 | <a name="l01014"></a>01014 <span class="keywordflow">return</span> temp; |
| | 714 | <a name="l01015"></a>01015 } |
| | 715 | <a name="l01016"></a>01016 |
| | 716 | <a name="l01017"></a>01017 <span class="keyword">template</span><<span class="keyword">class</span> EPDF> |
| | 717 | <a name="l01018"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823">01018</a> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">mpdf_internal<EPDF>::samplecond_m</a> (<span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N) |
| | 718 | <a name="l01019"></a>01019 { |
| | 719 | <a name="l01020"></a>01020 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond); |
| | 720 | <a name="l01021"></a>01021 mat temp (dimension(), N); |
| | 721 | <a name="l01022"></a>01022 vec smp (dimension()); |
| | 722 | <a name="l01023"></a>01023 <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < N; i++) { |
| | 723 | <a name="l01024"></a>01024 smp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample(); |
| | 724 | <a name="l01025"></a>01025 temp.set_col (i, smp); |
| | 725 | <a name="l01026"></a>01026 } |
| | 726 | <a name="l01027"></a>01027 |
| | 727 | <a name="l01028"></a>01028 <span class="keywordflow">return</span> temp; |
| | 728 | <a name="l01029"></a>01029 } |
| | 729 | <a name="l01030"></a>01030 |
| | 730 | <a name="l01031"></a>01031 <span class="keyword">template</span><<span class="keyword">class</span> EPDF> |
| | 731 | <a name="l01032"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948">01032</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">mpdf_internal<EPDF>::evallogcond</a> (<span class="keyword">const</span> vec &dt, <span class="keyword">const</span> vec &cond) |
| | 732 | <a name="l01033"></a>01033 { |
| | 733 | <a name="l01034"></a>01034 <span class="keywordtype">double</span> tmp; |
| | 734 | <a name="l01035"></a>01035 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond); |
| | 735 | <a name="l01036"></a>01036 tmp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog (dt); |
| | 736 | <a name="l01037"></a>01037 <span class="keywordflow">return</span> tmp; |
| | 737 | <a name="l01038"></a>01038 } |
| | 738 | <a name="l01039"></a>01039 |
| | 739 | <a name="l01040"></a>01040 <span class="keyword">template</span><<span class="keyword">class</span> EPDF> |
| | 740 | <a name="l01041"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c">01041</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal<EPDF>::evallogcond_m</a> (<span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond) |
| | 741 | <a name="l01042"></a>01042 { |
| | 742 | <a name="l01043"></a>01043 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond); |
| | 743 | <a name="l01044"></a>01044 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m (Dt); |
| | 744 | <a name="l01045"></a>01045 } |
| | 745 | <a name="l01046"></a>01046 |
| | 746 | <a name="l01047"></a>01047 <span class="keyword">template</span><<span class="keyword">class</span> EPDF> |
| | 747 | <a name="l01048"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae82db07ce8af02f29cfd81e014edb3db">01048</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal<EPDF>::evallogcond_m</a> (<span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond) |
| | 748 | <a name="l01049"></a>01049 { |
| | 749 | <a name="l01050"></a>01050 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond); |
| | 750 | <a name="l01051"></a>01051 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m (Dt); |
| | 751 | <a name="l01052"></a>01052 } |
| | 752 | <a name="l01053"></a>01053 |
| | 753 | <a name="l01054"></a>01054 }; <span class="comment">//namespace</span> |
| | 754 | <a name="l01055"></a>01055 <span class="preprocessor">#endif // BDMBASE_H</span> |
