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bdmbase_8h_source.html

Timestamp:

09/12/09 11:41:43 (15 years ago)

Author:

smidl

Message:

doc

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: 1 modified

library/doc/html/bdmbase_8h_source.html (modified) (1 diff)

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library/doc/html/bdmbase_8h_source.html

r591	r608
80	80	<a name="l00025"></a>00025 <span class="keyword">using namespace </span>std;
81	81	<a name="l00026"></a>00026
82		<a name="l00027"></a>00027 <span class="keyword">namespace </span>bdm
83		<a name="l00028"></a>00028 {
84		<a name="l00029"></a>00029
85		<a name="l00030"></a>00030 <span class="keyword">typedef</span> std::map<string, int> RVmap;
86		<a name="l00032"></a>00032 <span class="keyword">extern</span> ivec RV_SIZES;
87		<a name="l00034"></a>00034 <span class="keyword">extern</span> Array<string> RV_NAMES;
88		<a name="l00035"></a>00035
89		<a name="l00037"></a><a class="code" href="classbdm_1_1str.html">00037</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a>
90		<a name="l00038"></a>00038 {
91		<a name="l00039"></a>00039 <span class="keyword">public</span>:
92		<a name="l00041"></a><a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0">00041</a> ivec <a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a>;
93		<a name="l00043"></a><a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a">00043</a> ivec <a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a>;
94		<a name="l00045"></a><a class="code" href="classbdm_1_1str.html#a7c6b9dccc6814d7bd1e8e2208a0d3f3f">00045</a> <a class="code" href="classbdm_1_1str.html#a7c6b9dccc6814d7bd1e8e2208a0d3f3f" title="Default constructor.">str</a> (ivec ids0, ivec times0) : <a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a> (ids0), <a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a> (times0) {
95		<a name="l00046"></a>00046 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (times0.length() == ids0.length(), <span class="stringliteral">"Incompatible input"</span>);
96		<a name="l00047"></a>00047 };
97		<a name="l00048"></a>00048 };
98		<a name="l00049"></a>00049
99		<a name="l00088"></a><a class="code" href="classbdm_1_1RV.html">00088</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a>
100		<a name="l00089"></a>00089 {
101		<a name="l00090"></a>00090 <span class="keyword">protected</span>:
102		<a name="l00092"></a><a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb">00092</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>;
103		<a name="l00094"></a><a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385">00094</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>;
104		<a name="l00096"></a><a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b">00096</a> ivec <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>;
105		<a name="l00098"></a><a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896">00098</a> ivec <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>;
106		<a name="l00099"></a>00099
107		<a name="l00100"></a>00100 <span class="keyword">private</span>:
108		<a name="l00102"></a>00102 <span class="keywordtype">void</span> init (<span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes, <span class="keyword">const</span> ivec &in_times);
109		<a name="l00103"></a>00103 <span class="keywordtype">int</span> init (<span class="keyword">const</span> <span class="keywordtype">string</span> &name, <span class="keywordtype">int</span> size);
110		<a name="l00104"></a>00104 <span class="keyword">public</span>:
111		<a name="l00107"></a>00107
112		<a name="l00109"></a><a class="code" href="classbdm_1_1RV.html#a3fa35c2744e687c74f7742990e6aa264">00109</a> <a class="code" href="classbdm_1_1RV.html#a3fa35c2744e687c74f7742990e6aa264" title="Full constructor.">RV</a> (<span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes, <span class="keyword">const</span> ivec &in_times) {
113		<a name="l00110"></a>00110 init (in_names, in_sizes, in_times);
114		<a name="l00111"></a>00111 }
115		<a name="l00112"></a>00112
116		<a name="l00114"></a><a class="code" href="classbdm_1_1RV.html#a381f5d963bb54efd4e76815dc93d50ce">00114</a> <a class="code" href="classbdm_1_1RV.html#a381f5d963bb54efd4e76815dc93d50ce" title="Constructor with times=0.">RV</a> (<span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes) {
117		<a name="l00115"></a>00115 init (in_names, in_sizes, zeros_i (in_names.length()));
118		<a name="l00116"></a>00116 }
119		<a name="l00117"></a>00117
120		<a name="l00119"></a><a class="code" href="classbdm_1_1RV.html#acb47d71d82639ec7ddf2635b21aafd00">00119</a> <a class="code" href="classbdm_1_1RV.html#acb47d71d82639ec7ddf2635b21aafd00" title="Constructor with sizes=1, times=0.">RV</a> (<span class="keyword">const</span> Array<std::string> &in_names) {
121		<a name="l00120"></a>00120 init (in_names, ones_i (in_names.length()), zeros_i (in_names.length()));
122		<a name="l00121"></a>00121 }
123		<a name="l00122"></a>00122
124		<a name="l00124"></a><a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412">00124</a> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a>() : <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a> (0), <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a> (0), <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (0), <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> (0) {}
	82	<a name="l00027"></a>00027 <span class="keyword">namespace </span>bdm {
	83	<a name="l00029"></a><a class="code" href="classbdm_1_1str.html">00029</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> {
	84	<a name="l00030"></a>00030 <span class="keyword">public</span>:
	85	<a name="l00032"></a><a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0">00032</a> ivec <a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a>;
	86	<a name="l00034"></a><a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a">00034</a> ivec <a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a>;
	87	<a name="l00036"></a><a class="code" href="classbdm_1_1str.html#a7c6b9dccc6814d7bd1e8e2208a0d3f3f">00036</a> <a class="code" href="classbdm_1_1str.html#a7c6b9dccc6814d7bd1e8e2208a0d3f3f" title="Default constructor.">str</a> ( ivec ids0, ivec times0 ) : <a class="code" href="classbdm_1_1str.html#a64675a73fc7324177175f19b3baeb0b0" title="vector id ids (non-unique!)">ids</a> ( ids0 ), <a class="code" href="classbdm_1_1str.html#a905dc0f240e40432c103708c4a34f80a" title="vector of times">times</a> ( times0 ) {
	88	<a name="l00037"></a>00037 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( times0.length() == ids0.length(), <span class="stringliteral">"Incompatible input"</span> );
	89	<a name="l00038"></a>00038 };
	90	<a name="l00039"></a>00039 };
	91	<a name="l00040"></a>00040
	92	<a name="l00079"></a><a class="code" href="classbdm_1_1RV.html">00079</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
	93	<a name="l00080"></a>00080 <span class="keyword">private</span>:
	94	<a name="l00081"></a>00081 <span class="keyword">typedef</span> std::map<string, int> str2int_map;
	95	<a name="l00082"></a>00082
	96	<a name="l00084"></a>00084 <span class="keyword">static</span> ivec SIZES;
	97	<a name="l00086"></a>00086 <span class="keyword">static</span> Array<string> NAMES;
	98	<a name="l00087"></a>00087
	99	<a name="l00089"></a>00089 <span class="keyword">const</span> <span class="keyword">static</span> <span class="keywordtype">int</span> BUFFER_STEP;
	100	<a name="l00090"></a>00090
	101	<a name="l00092"></a>00092 <span class="keyword">static</span> str2int_map MAP;
	102	<a name="l00093"></a>00093
	103	<a name="l00094"></a>00094 <span class="keyword">public</span>:
	104	<a name="l00095"></a>00095
	105	<a name="l00096"></a>00096 <span class="keyword">protected</span>:
	106	<a name="l00098"></a><a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb">00098</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>;
	107	<a name="l00100"></a><a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385">00100</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>;
	108	<a name="l00102"></a><a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b">00102</a> ivec <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>;
	109	<a name="l00104"></a><a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896">00104</a> ivec <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>;
	110	<a name="l00105"></a>00105
	111	<a name="l00106"></a>00106 <span class="keyword">private</span>:
	112	<a name="l00107"></a>00107 <span class="keyword">enum</span> enum_dummy {dummy};
	113	<a name="l00108"></a>00108
	114	<a name="l00110"></a>00110 <span class="keywordtype">void</span> init ( <span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes, <span class="keyword">const</span> ivec &in_times );
	115	<a name="l00111"></a>00111 <span class="keywordtype">int</span> init ( <span class="keyword">const</span> <span class="keywordtype">string</span> &name, <span class="keywordtype">int</span> size );
	116	<a name="l00114"></a>00114 <span class="keyword">explicit</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> ( <span class="keyword">const</span> ivec &ids0, enum_dummy dum ) : <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a> ( 0 ), <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a> ( ids0.<a class="code" href="classbdm_1_1RV.html#ae9ec8c3e756651ff352ab5e3d3acda4b" title="Number of named parts.">length</a>() ), <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( ids0 ), <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( zeros_i ( ids0.<a class="code" href="classbdm_1_1RV.html#ae9ec8c3e756651ff352ab5e3d3acda4b" title="Number of named parts.">length</a>() ) ) {
	117	<a name="l00115"></a>00115 <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a> = <a class="code" href="classbdm_1_1RV.html#a39f9b44752376f07e346579b5ff8cbbd" title="Recount size of the corresponding data vector.">countsize</a>();
	118	<a name="l00116"></a>00116 }
	119	<a name="l00117"></a>00117 <span class="keyword">public</span>:
	120	<a name="l00120"></a>00120
	121	<a name="l00122"></a><a class="code" href="classbdm_1_1RV.html#a3fa35c2744e687c74f7742990e6aa264">00122</a> <a class="code" href="classbdm_1_1RV.html#a3fa35c2744e687c74f7742990e6aa264" title="Full constructor.">RV</a> ( <span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes, <span class="keyword">const</span> ivec &in_times ) {
	122	<a name="l00123"></a>00123 init ( in_names, in_sizes, in_times );
	123	<a name="l00124"></a>00124 }
125	124	<a name="l00125"></a>00125
126		<a name="l00127"></a>00127 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> (<span class="keywordtype">string</span> name, <span class="keywordtype">int</span> sz, <span class="keywordtype">int</span> tm = 0);
127		<a name="l00128"></a>00128
128		<a name="l00129"></a>00129 <span class="comment">// compiler-generated copy constructor is used</span>
129		<a name="l00131"></a>00131 <span class="comment"></span>
130		<a name="l00134"></a>00134
131		<a name="l00136"></a>00136 <span class="keyword">friend</span> std::ostream &<a class="code" href="classbdm_1_1RV.html#acad6f15535d10437f6690cb4492176a8" title="State output, e.g. for debugging.">operator<< </a>(std::ostream &os, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv);
132		<a name="l00137"></a>00137
133		<a name="l00138"></a>00138 <span class="keywordtype">int</span> _dsize()<span class="keyword"> const </span>{
134		<a name="l00139"></a>00139 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>;
135		<a name="l00140"></a>00140 }
136		<a name="l00141"></a>00141
137		<a name="l00143"></a><a class="code" href="classbdm_1_1RV.html#a26318eb90cb172ea86d1f45de9131c4e">00143</a> <span class="keyword">const</span> ivec& <a class="code" href="classbdm_1_1RV.html#a26318eb90cb172ea86d1f45de9131c4e" title="access function">_ids</a>()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>;}
138		<a name="l00144"></a>00144
139		<a name="l00146"></a>00146 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a39f9b44752376f07e346579b5ff8cbbd" title="Recount size of the corresponding data vector.">countsize</a>() <span class="keyword">const</span>;
140		<a name="l00147"></a>00147 ivec cumsizes() <span class="keyword">const</span>;
141		<a name="l00148"></a>00148 <span class="keywordtype">int</span> length()<span class="keyword"> const </span>{
142		<a name="l00149"></a>00149 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>;
143		<a name="l00150"></a>00150 }
144		<a name="l00151"></a>00151 <span class="keywordtype">int</span> id (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{
145		<a name="l00152"></a>00152 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (at);
146		<a name="l00153"></a>00153 }
147		<a name="l00154"></a>00154 <span class="keywordtype">int</span> size (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{
148		<a name="l00155"></a>00155 <span class="keywordflow">return</span> RV_SIZES (<a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (at));
149		<a name="l00156"></a>00156 }
150		<a name="l00157"></a>00157 <span class="keywordtype">int</span> time (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{
151		<a name="l00158"></a>00158 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> (at);
152		<a name="l00159"></a>00159 }
153		<a name="l00160"></a>00160 std::string name (<span class="keywordtype">int</span> at)<span class="keyword"> const </span>{
154		<a name="l00161"></a>00161 <span class="keywordflow">return</span> RV_NAMES (<a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> (at));
155		<a name="l00162"></a>00162 }
156		<a name="l00163"></a>00163 <span class="keywordtype">void</span> set_time (<span class="keywordtype">int</span> at, <span class="keywordtype">int</span> time0) {
157		<a name="l00164"></a>00164 <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> (at) = time0;
158		<a name="l00165"></a>00165 }
159		<a name="l00167"></a>00167
160		<a name="l00170"></a>00170
161		<a name="l00172"></a>00172 ivec <a class="code" href="classbdm_1_1RV.html#a1367055b2608ad9d50d01a2da6cec869" title="Find indices of self in another rv,.">findself</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>;
162		<a name="l00174"></a>00174 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>;
163		<a name="l00176"></a>00176 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2);
164		<a name="l00178"></a>00178 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2) <span class="keyword">const</span>;
165		<a name="l00180"></a>00180 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> (<span class="keyword">const</span> ivec &ind) <span class="keyword">const</span>;
166		<a name="l00181"></a>00181
167		<a name="l00183"></a><a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966">00183</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>(<span class="keyword">const</span> ivec &ind)<span class="keyword"> const </span>{
168		<a name="l00184"></a>00184 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> (ind);
169		<a name="l00185"></a>00185 }
170		<a name="l00186"></a>00186
171		<a name="l00188"></a>00188 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>(<span class="keywordtype">int</span> di1, <span class="keywordtype">int</span> di2) <span class="keyword">const</span>;
172		<a name="l00189"></a>00189
173		<a name="l00191"></a>00191 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#abd77cb0899f7fba1d0e34396137b7f1f" title="Shift time by delta.">t</a> (<span class="keywordtype">int</span> delta);
174		<a name="l00193"></a>00193
175		<a name="l00196"></a>00196
176		<a name="l00198"></a>00198 <a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> <a class="code" href="classbdm_1_1RV.html#a8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes">tostr</a>() <span class="keyword">const</span>;
177		<a name="l00201"></a>00201 ivec <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &crv) <span class="keyword">const</span>;
178		<a name="l00204"></a>00204 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv2, ivec &selfi, ivec &rv2i) <span class="keyword">const</span>;
179		<a name="l00206"></a><a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241">00206</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>()<span class="keyword"> const </span>{
180		<a name="l00207"></a>00207 <span class="keywordflow">return</span> min (<a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>);
181		<a name="l00208"></a>00208 }
182		<a name="l00210"></a>00210
183		<a name="l00225"></a>00225 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#a6564bdd36b6845a51446a192d33e1194" title="UI for class RV (description of data vectors).">from_setting</a> (<span class="keyword">const</span> Setting &<span class="keyword">set</span>);
184		<a name="l00226"></a>00226
185		<a name="l00227"></a>00227 <span class="comment">// TODO dodelat void to_setting( Setting &set ) const;</span>
186		<a name="l00229"></a>00229 <span class="comment"></span> <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#aab92b361335a644df654cf7cf7e5ffc0" title="Invalidate all named RVs. Use before initializing any RV instances, with care...">clear_all</a>();
187		<a name="l00230"></a>00230 };
188		<a name="l00231"></a>00231 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> (RV);
189		<a name="l00232"></a>00232 SHAREDPTR (RV);
190		<a name="l00233"></a>00233
191		<a name="l00235"></a>00235 RV concat (<span class="keyword">const</span> RV &rv1, <span class="keyword">const</span> RV &rv2);
192		<a name="l00236"></a>00236
193		<a name="l00238"></a>00238 <span class="keyword">extern</span> RV RV0;
	125	<a name="l00127"></a><a class="code" href="classbdm_1_1RV.html#a381f5d963bb54efd4e76815dc93d50ce">00127</a> <a class="code" href="classbdm_1_1RV.html#a381f5d963bb54efd4e76815dc93d50ce" title="Constructor with times=0.">RV</a> ( <span class="keyword">const</span> Array<std::string> &in_names, <span class="keyword">const</span> ivec &in_sizes ) {
	126	<a name="l00128"></a>00128 init ( in_names, in_sizes, zeros_i ( in_names.length() ) );
	127	<a name="l00129"></a>00129 }
	128	<a name="l00130"></a>00130
	129	<a name="l00132"></a><a class="code" href="classbdm_1_1RV.html#acb47d71d82639ec7ddf2635b21aafd00">00132</a> <a class="code" href="classbdm_1_1RV.html#acb47d71d82639ec7ddf2635b21aafd00" title="Constructor with sizes=1, times=0.">RV</a> ( <span class="keyword">const</span> Array<std::string> &in_names ) {
	130	<a name="l00133"></a>00133 init ( in_names, ones_i ( in_names.length() ), zeros_i ( in_names.length() ) );
	131	<a name="l00134"></a>00134 }
	132	<a name="l00135"></a>00135
	133	<a name="l00137"></a><a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412">00137</a> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a>() : <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a> ( 0 ), <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a> ( 0 ), <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( 0 ), <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( 0 ) {}
	134	<a name="l00138"></a>00138
	135	<a name="l00140"></a>00140 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> ( <span class="keywordtype">string</span> name, <span class="keywordtype">int</span> sz, <span class="keywordtype">int</span> tm = 0 );
	136	<a name="l00141"></a>00141
	137	<a name="l00142"></a>00142 <span class="comment">// compiler-generated copy constructor is used</span>
	138	<a name="l00144"></a>00144 <span class="comment"></span>
	139	<a name="l00147"></a>00147
	140	<a name="l00149"></a>00149 <span class="keyword">friend</span> std::ostream &<a class="code" href="classbdm_1_1RV.html#acad6f15535d10437f6690cb4492176a8" title="State output, e.g. for debugging.">operator<< </a>( std::ostream &os, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv );
	141	<a name="l00150"></a>00150
	142	<a name="l00151"></a><a class="code" href="classbdm_1_1RV.html#ab361a9044e6a43102c4f873b9f566a0f">00151</a> <span class="keywordtype">string</span> <a class="code" href="classbdm_1_1RV.html#ab361a9044e6a43102c4f873b9f566a0f" title="This method returns a basic info about the current instance.">to_string</a>() {ostringstream o; o << <span class="keyword">this</span>; <span class="keywordflow">return</span> o.str();}
	143	<a name="l00152"></a>00152
	144	<a name="l00154"></a><a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089">00154</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>()<span class="keyword"> const </span>{
	145	<a name="l00155"></a>00155 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>;
	146	<a name="l00156"></a>00156 }
	147	<a name="l00157"></a>00157
	148	<a name="l00159"></a><a class="code" href="classbdm_1_1RV.html#a26318eb90cb172ea86d1f45de9131c4e">00159</a> <span class="keyword">const</span> ivec& <a class="code" href="classbdm_1_1RV.html#a26318eb90cb172ea86d1f45de9131c4e" title="access function">_ids</a>()<span class="keyword"> const </span>{
	149	<a name="l00160"></a>00160 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>;
	150	<a name="l00161"></a>00161 }
	151	<a name="l00162"></a>00162
	152	<a name="l00164"></a>00164 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a39f9b44752376f07e346579b5ff8cbbd" title="Recount size of the corresponding data vector.">countsize</a>() <span class="keyword">const</span>;
	153	<a name="l00166"></a>00166 ivec <a class="code" href="classbdm_1_1RV.html#a412d43294bac38fa1804829e38fa4eaf" title="Vector of cumulative sizes of RV.">cumsizes</a>() <span class="keyword">const</span>;
	154	<a name="l00168"></a><a class="code" href="classbdm_1_1RV.html#ae9ec8c3e756651ff352ab5e3d3acda4b">00168</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#ae9ec8c3e756651ff352ab5e3d3acda4b" title="Number of named parts.">length</a>()<span class="keyword"> const </span>{
	155	<a name="l00169"></a>00169 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ab11bfdceb831ed30d33b852dd4a6b385" title="number of individual rvs">len</a>;
	156	<a name="l00170"></a>00170 }
	157	<a name="l00171"></a>00171 <span class="keywordtype">int</span> id ( <span class="keywordtype">int</span> at )<span class="keyword"> const </span>{
	158	<a name="l00172"></a>00172 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at );
	159	<a name="l00173"></a>00173 }
	160	<a name="l00174"></a>00174 <span class="keywordtype">int</span> size ( <span class="keywordtype">int</span> at )<span class="keyword"> const </span>{
	161	<a name="l00175"></a>00175 <span class="keywordflow">return</span> SIZES ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at ) );
	162	<a name="l00176"></a>00176 }
	163	<a name="l00177"></a>00177 <span class="keywordtype">int</span> time ( <span class="keywordtype">int</span> at )<span class="keyword"> const </span>{
	164	<a name="l00178"></a>00178 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( at );
	165	<a name="l00179"></a>00179 }
	166	<a name="l00180"></a>00180 std::string name ( <span class="keywordtype">int</span> at )<span class="keyword"> const </span>{
	167	<a name="l00181"></a>00181 <span class="keywordflow">return</span> NAMES ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at ) );
	168	<a name="l00182"></a>00182 }
	169	<a name="l00183"></a>00183 <span class="keywordtype">void</span> set_time ( <span class="keywordtype">int</span> at, <span class="keywordtype">int</span> time0 ) {
	170	<a name="l00184"></a>00184 <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( at ) = time0;
	171	<a name="l00185"></a>00185 }
	172	<a name="l00187"></a>00187
	173	<a name="l00190"></a>00190
	174	<a name="l00192"></a>00192 ivec <a class="code" href="classbdm_1_1RV.html#a1367055b2608ad9d50d01a2da6cec869" title="Find indices of self in another rv,.">findself</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2 ) <span class="keyword">const</span>;
	175	<a name="l00194"></a>00194 ivec <a class="code" href="classbdm_1_1RV.html#aa858d36d0264e1f1c89500531162fdf1" title="Find indices of self in another rv, ignore time,.">findself_ids</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2 ) <span class="keyword">const</span>;
	176	<a name="l00196"></a>00196 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2 ) <span class="keyword">const</span>;
	177	<a name="l00198"></a>00198 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2 );
	178	<a name="l00200"></a>00200 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &rv2 ) <span class="keyword">const</span>;
	179	<a name="l00202"></a>00202 <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( <span class="keyword">const</span> ivec &ind ) <span class="keyword">const</span>;
	180	<a name="l00203"></a>00203
	181	<a name="l00205"></a><a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966">00205</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>( <span class="keyword">const</span> ivec &ind )<span class="keyword"> const </span>{
	182	<a name="l00206"></a>00206 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( ind );
	183	<a name="l00207"></a>00207 }
	184	<a name="l00208"></a>00208
	185	<a name="l00210"></a>00210 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>( <span class="keywordtype">int</span> di1, <span class="keywordtype">int</span> di2 ) <span class="keyword">const</span>;
	186	<a name="l00211"></a>00211
	187	<a name="l00213"></a>00213 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a> ( <span class="keywordtype">int</span> delta );
	188	<a name="l00215"></a>00215
	189	<a name="l00218"></a>00218 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> remove_time()<span class="keyword"> const </span>{
	190	<a name="l00219"></a>00219 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> ( unique ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ), dummy );
	191	<a name="l00220"></a>00220 }
	192	<a name="l00222"></a><a class="code" href="classbdm_1_1RV.html#a627222f49abc5d07e5e8aecac7708ee2">00222</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a627222f49abc5d07e5e8aecac7708ee2" title="create new RV from the current one with time shifted by given value">copy_t</a>(<span class="keywordtype">int</span> dt)<span class="keyword"> const </span>{
	193	<a name="l00223"></a>00223 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> tmp=*<span class="keyword">this</span>;
	194	<a name="l00224"></a>00224 tmp.<a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a>(dt);
	195	<a name="l00225"></a>00225 <span class="keywordflow">return</span> tmp;
	196	<a name="l00226"></a>00226 }
	197	<a name="l00228"></a><a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e">00228</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e" title="return rvs with expanded delayes and sorted in the order of:">expand_delayes</a>()<span class="keyword"> const </span>{
	198	<a name="l00229"></a>00229 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rvt = this->remove_time(); <span class="comment">//rv at t=0</span>
	199	<a name="l00230"></a>00230 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> tmp = rvt;
	200	<a name="l00231"></a>00231 <span class="keywordtype">int</span> td = <a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>();
	201	<a name="l00232"></a>00232 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = -1; i >= td; i-- ) {
	202	<a name="l00233"></a>00233 rvt.<a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a> ( -1 );
	203	<a name="l00234"></a>00234 tmp.<a class="code" href="classbdm_1_1RV.html#a87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a> ( rvt ); <span class="comment">//shift u1</span>
	204	<a name="l00235"></a>00235 }
	205	<a name="l00236"></a>00236 <span class="keywordflow">return</span> tmp;
	206	<a name="l00237"></a>00237 }
194	207	<a name="l00239"></a>00239
195		<a name="l00241"></a>00241
196		<a name="l00242"></a><a class="code" href="classbdm_1_1fnc.html">00242</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1fnc.html" title="Class representing function of variable represented by rv.">fnc</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a>
197		<a name="l00243"></a>00243 {
198		<a name="l00244"></a>00244 <span class="keyword">protected</span>:
199		<a name="l00246"></a><a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62">00246</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;
200		<a name="l00247"></a>00247 <span class="keyword">public</span>:
201		<a name="l00249"></a><a class="code" href="classbdm_1_1fnc.html#a65e9fb11f6cc7884018d8f229bcabbb7">00249</a> <a class="code" href="classbdm_1_1fnc.html#a65e9fb11f6cc7884018d8f229bcabbb7" title="default constructor">fnc</a>() {};
202		<a name="l00251"></a><a class="code" href="classbdm_1_1fnc.html#a6277b11d7fffc7ef8a2fa3e84ae5bad4">00251</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1fnc.html#a6277b11d7fffc7ef8a2fa3e84ae5bad4" title="function evaluates numerical value of at cond ">eval</a> (<span class="keyword">const</span> vec &cond) {
203		<a name="l00252"></a>00252 <span class="keywordflow">return</span> vec (0);
204		<a name="l00253"></a>00253 };
205		<a name="l00254"></a>00254
206		<a name="l00256"></a><a class="code" href="classbdm_1_1fnc.html#a0786e40fade2663a70d654c1dda5d73e">00256</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1fnc.html#a0786e40fade2663a70d654c1dda5d73e" title="function substitutes given value into an appropriate position">condition</a> (<span class="keyword">const</span> vec &val) {};
207		<a name="l00257"></a>00257
208		<a name="l00259"></a><a class="code" href="classbdm_1_1fnc.html#a083832294da9d1e40804158b979c4341">00259</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a083832294da9d1e40804158b979c4341" title="access function">dimension</a>()<span class="keyword"> const </span>{
209		<a name="l00260"></a>00260 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;
210		<a name="l00261"></a>00261 }
211		<a name="l00262"></a>00262 };
212		<a name="l00263"></a>00263
213		<a name="l00264"></a>00264 <span class="keyword">class </span>mpdf;
214		<a name="l00265"></a>00265
215		<a name="l00267"></a>00267
216		<a name="l00268"></a><a class="code" href="classbdm_1_1epdf.html">00268</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a>
217		<a name="l00269"></a>00269 {
218		<a name="l00270"></a>00270 <span class="keyword">protected</span>:
219		<a name="l00272"></a><a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce">00272</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;
220		<a name="l00274"></a><a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8">00274</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;
221		<a name="l00275"></a>00275
222		<a name="l00276"></a>00276 <span class="keyword">public</span>:
223		<a name="l00288"></a>00288 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>() : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> (0), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>() {};
224		<a name="l00289"></a>00289 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &e) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> (e.<a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> (e.<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>) {};
225		<a name="l00290"></a>00290 epdf (<span class="keyword">const</span> RV &rv0) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> (rv0._dsize()) {
226		<a name="l00291"></a>00291 <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> (rv0);
227		<a name="l00292"></a>00292 };
228		<a name="l00293"></a>00293 <span class="keywordtype">void</span> set_parameters (<span class="keywordtype">int</span> dim0) {
229		<a name="l00294"></a>00294 <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> = dim0;
230		<a name="l00295"></a>00295 }
231		<a name="l00297"></a>00297
232		<a name="l00300"></a>00300
233		<a name="l00302"></a><a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b">00302</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample, from density .">sample</a>()<span class="keyword"> const </span>{
234		<a name="l00303"></a>00303 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"not implemented"</span>);
235		<a name="l00304"></a>00304 <span class="keywordflow">return</span> vec();
236		<a name="l00305"></a>00305 }
237		<a name="l00306"></a>00306
238		<a name="l00308"></a>00308 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#ab4cf45fd83cc7573ede9fe1215256058" title="Returns N samples, from density .">sample_m</a> (<span class="keywordtype">int</span> N) <span class="keyword">const</span>;
239		<a name="l00309"></a>00309
240		<a name="l00312"></a><a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">00312</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">evallog</a> (<span class="keyword">const</span> vec &val)<span class="keyword"> const </span>{
241		<a name="l00313"></a>00313 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"not implemented"</span>);
242		<a name="l00314"></a>00314 <span class="keywordflow">return</span> 0.0;
243		<a name="l00315"></a>00315 }
244		<a name="l00316"></a>00316
245		<a name="l00318"></a>00318 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> (<span class="keyword">const</span> mat &Val) <span class="keyword">const</span>;
246		<a name="l00319"></a>00319
247		<a name="l00321"></a>00321 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> (<span class="keyword">const</span> Array<vec> &Avec) <span class="keyword">const</span>;
248		<a name="l00322"></a>00322
249		<a name="l00324"></a>00324 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<mpdf></a> <a class="code" href="classbdm_1_1epdf.html#a1499d35b79bce0cfa64fc5cafb9c03b2" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>) <span class="keyword">const</span>;
250		<a name="l00325"></a>00325
251		<a name="l00327"></a>00327 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> <a class="code" href="classbdm_1_1epdf.html#aa84b05f5293cab2aeb4e07faffa60906" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>) <span class="keyword">const</span>;
252		<a name="l00328"></a>00328
253		<a name="l00330"></a><a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75">00330</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>()<span class="keyword"> const </span>{
254		<a name="l00331"></a>00331 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"not implemneted"</span>);
255		<a name="l00332"></a>00332 <span class="keywordflow">return</span> vec();
256		<a name="l00333"></a>00333 }
257		<a name="l00334"></a>00334
258		<a name="l00336"></a><a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c">00336</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()<span class="keyword"> const </span>{
259		<a name="l00337"></a>00337 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"not implemneted"</span>);
260		<a name="l00338"></a>00338 <span class="keywordflow">return</span> vec();
261		<a name="l00339"></a>00339 }
262		<a name="l00340"></a>00340
263		<a name="l00342"></a><a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539">00342</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> (vec &lb, vec &ub, <span class="keywordtype">double</span> percentage = 0.95)<span class="keyword"> const </span>{
264		<a name="l00343"></a>00343 vec mea = <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>();
265		<a name="l00344"></a>00344 vec std = sqrt (<a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>());
266		<a name="l00345"></a>00345 lb = mea - 2 * std;
267		<a name="l00346"></a>00346 ub = mea + 2 * std;
268		<a name="l00347"></a>00347 };
269		<a name="l00349"></a>00349
	208	<a name="l00242"></a>00242
	209	<a name="l00244"></a>00244 <a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> <a class="code" href="classbdm_1_1RV.html#a8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes">tostr</a>() <span class="keyword">const</span>;
	210	<a name="l00247"></a>00247 ivec <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &crv ) <span class="keyword">const</span>;
	211	<a name="l00249"></a>00249 ivec <a class="code" href="classbdm_1_1RV.html#a0c6e3a1c54a612d2ea390c841aa5eb6f" title="same as dataind but this time crv should not be complete supperset of rv.">dataind_part</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &crv ) <span class="keyword">const</span>;
	212	<a name="l00252"></a>00252 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv2, ivec &selfi, ivec &rv2i ) <span class="keyword">const</span>;
	213	<a name="l00254"></a><a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241">00254</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>()<span class="keyword"> const </span>{
	214	<a name="l00255"></a>00255 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>.length()>0 ? min (<a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>) : 0;
	215	<a name="l00256"></a>00256 }
	216	<a name="l00258"></a>00258
	217	<a name="l00273"></a>00273 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#a6564bdd36b6845a51446a192d33e1194" title="UI for class RV (description of data vectors).">from_setting</a> ( <span class="keyword">const</span> Setting &<span class="keyword">set</span> );
	218	<a name="l00274"></a>00274
	219	<a name="l00275"></a>00275 <span class="comment">// TODO dodelat void to_setting( Setting &set ) const;</span>
	220	<a name="l00276"></a>00276
	221	<a name="l00278"></a>00278 <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#aab92b361335a644df654cf7cf7e5ffc0" title="Invalidate all named RVs. Use before initializing any RV instances, with care...">clear_all</a>();
	222	<a name="l00280"></a>00280 <span class="keywordtype">string</span> <a class="code" href="classbdm_1_1RV.html#a0743ab524c18d0c6553b29b043fd42bd" title="function for debugging RV related stuff">show_all</a>();
	223	<a name="l00281"></a>00281
	224	<a name="l00282"></a>00282 };
	225	<a name="l00283"></a>00283 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( RV );
	226	<a name="l00284"></a>00284 SHAREDPTR ( RV );
	227	<a name="l00285"></a>00285
	228	<a name="l00287"></a>00287 RV concat ( <span class="keyword">const</span> RV &rv1, <span class="keyword">const</span> RV &rv2 );
	229	<a name="l00288"></a>00288
	230	<a name="l00290"></a><a class="code" href="classbdm_1_1fnc.html">00290</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1fnc.html" title="Class representing function of variable represented by rv.">fnc</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
	231	<a name="l00291"></a>00291 <span class="keyword">protected</span>:
	232	<a name="l00293"></a><a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62">00293</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;
	233	<a name="l00294"></a>00294 <span class="keyword">public</span>:
	234	<a name="l00296"></a><a class="code" href="classbdm_1_1fnc.html#a65e9fb11f6cc7884018d8f229bcabbb7">00296</a> <a class="code" href="classbdm_1_1fnc.html#a65e9fb11f6cc7884018d8f229bcabbb7" title="default constructor">fnc</a>() {};
	235	<a name="l00298"></a><a class="code" href="classbdm_1_1fnc.html#a6277b11d7fffc7ef8a2fa3e84ae5bad4">00298</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1fnc.html#a6277b11d7fffc7ef8a2fa3e84ae5bad4" title="function evaluates numerical value of at cond ">eval</a> ( <span class="keyword">const</span> vec &cond ) {
	236	<a name="l00299"></a>00299 <span class="keywordflow">return</span> vec ( 0 );
	237	<a name="l00300"></a>00300 };
	238	<a name="l00301"></a>00301
	239	<a name="l00303"></a><a class="code" href="classbdm_1_1fnc.html#a0786e40fade2663a70d654c1dda5d73e">00303</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1fnc.html#a0786e40fade2663a70d654c1dda5d73e" title="function substitutes given value into an appropriate position">condition</a> ( <span class="keyword">const</span> vec &val ) {};
	240	<a name="l00304"></a>00304
	241	<a name="l00306"></a><a class="code" href="classbdm_1_1fnc.html#a083832294da9d1e40804158b979c4341">00306</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a083832294da9d1e40804158b979c4341" title="access function">dimension</a>()<span class="keyword"> const </span>{
	242	<a name="l00307"></a>00307 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;
	243	<a name="l00308"></a>00308 }
	244	<a name="l00309"></a>00309 };
	245	<a name="l00310"></a>00310
	246	<a name="l00311"></a>00311 <span class="keyword">class </span>mpdf;
	247	<a name="l00312"></a>00312
	248	<a name="l00314"></a>00314
	249	<a name="l00315"></a><a class="code" href="classbdm_1_1epdf.html">00315</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
	250	<a name="l00316"></a>00316 <span class="keyword">protected</span>:
	251	<a name="l00318"></a><a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce">00318</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;
	252	<a name="l00320"></a><a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8">00320</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;
	253	<a name="l00321"></a>00321
	254	<a name="l00322"></a>00322 <span class="keyword">public</span>:
	255	<a name="l00334"></a>00334 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>() : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( 0 ), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>() {};
	256	<a name="l00335"></a>00335 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &e ) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( e.<a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ( e.<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) {};
	257	<a name="l00336"></a>00336 epdf ( <span class="keyword">const</span> RV &rv0 ) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( rv0._dsize() ) {
	258	<a name="l00337"></a>00337 <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( rv0 );
	259	<a name="l00338"></a>00338 };
	260	<a name="l00339"></a>00339 <span class="keywordtype">void</span> set_parameters ( <span class="keywordtype">int</span> dim0 ) {
	261	<a name="l00340"></a>00340 <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> = dim0;
	262	<a name="l00341"></a>00341 }
	263	<a name="l00343"></a>00343
	264	<a name="l00346"></a>00346
	265	<a name="l00348"></a><a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b">00348</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample, from density .">sample</a>()<span class="keyword"> const </span>{
	266	<a name="l00349"></a>00349 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"not implemented"</span> );
	267	<a name="l00350"></a>00350 <span class="keywordflow">return</span> vec();
	268	<a name="l00351"></a>00351 }
	269	<a name="l00352"></a>00352
	270	<a name="l00354"></a>00354 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#ab4cf45fd83cc7573ede9fe1215256058" title="Returns N samples, from density .">sample_m</a> ( <span class="keywordtype">int</span> N ) <span class="keyword">const</span>;
270	271	<a name="l00355"></a>00355
271		<a name="l00357"></a><a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff">00357</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv0) {
272		<a name="l00358"></a>00358 <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> = rv0;
273		<a name="l00359"></a>00359 }
274		<a name="l00360"></a>00360
275		<a name="l00362"></a><a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9">00362</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>()<span class="keyword"> const </span>{
276		<a name="l00363"></a>00363 <span class="keywordtype">bool</span> b = (<a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> == <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>._dsize());
277		<a name="l00364"></a>00364 <span class="keywordflow">return</span> b;
278		<a name="l00365"></a>00365 }
279		<a name="l00366"></a>00366
280		<a name="l00368"></a><a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21">00368</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>()<span class="keyword"> const </span>{
281		<a name="l00369"></a>00369 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (<a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>(), <span class="stringliteral">""</span>);
282		<a name="l00370"></a>00370 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;
283		<a name="l00371"></a>00371 }
284		<a name="l00373"></a>00373
285		<a name="l00376"></a>00376
286		<a name="l00378"></a><a class="code" href="classbdm_1_1epdf.html#a7083a65f7b7a0d0d13b2c516bd2ec29c">00378</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>()<span class="keyword"> const </span>{
287		<a name="l00379"></a>00379 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;
288		<a name="l00380"></a>00380 }
289		<a name="l00388"></a><a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725">00388</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725">from_setting</a> (<span class="keyword">const</span> Setting &<span class="keyword">set</span>) {
290		<a name="l00389"></a>00389 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr<RV></a> r = UI::build<RV> ( <span class="keyword">set</span>, <span class="stringliteral">"rv"</span>, UI::optional );
291		<a name="l00390"></a>00390 <span class="keywordflow">if</span> (r) {
292		<a name="l00391"></a>00391 <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> (*r);
293		<a name="l00392"></a>00392 }
294		<a name="l00393"></a>00393 }
295		<a name="l00394"></a>00394
296		<a name="l00395"></a>00395 };
297		<a name="l00396"></a>00396 SHAREDPTR(epdf);
298		<a name="l00397"></a>00397
299		<a name="l00399"></a><a class="code" href="classbdm_1_1mpdf.html">00399</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a>
300		<a name="l00400"></a>00400 {
301		<a name="l00401"></a>00401 <span class="keyword">protected</span>:
302		<a name="l00403"></a><a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6">00403</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;
303		<a name="l00405"></a><a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288">00405</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;
304		<a name="l00406"></a>00406 <span class="keyword">private</span>:
305		<a name="l00408"></a>00408 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* ep;
306		<a name="l00409"></a>00409
307		<a name="l00410"></a>00410 <span class="keyword">protected</span>:
308		<a name="l00412"></a><a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e">00412</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> (<a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &iepdf) {
309		<a name="l00413"></a>00413 ep = &iepdf;
310		<a name="l00414"></a>00414 }
311		<a name="l00416"></a><a class="code" href="classbdm_1_1mpdf.html#a7555b377f8b5895c9b759c9628ee3e20">00416</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a7555b377f8b5895c9b759c9628ee3e20" title="set internal pointer ep to point to given iepdf ">set_ep</a> (<a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> *iepdfp) {
312		<a name="l00417"></a>00417 ep = iepdfp;
313		<a name="l00418"></a>00418 }
	272	<a name="l00358"></a><a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">00358</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val In case the argument is out of suport return...">evallog</a> ( <span class="keyword">const</span> vec &val )<span class="keyword"> const </span>{
	273	<a name="l00359"></a>00359 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"not implemented"</span> );
	274	<a name="l00360"></a>00360 <span class="keywordflow">return</span> 0.0;
	275	<a name="l00361"></a>00361 }
	276	<a name="l00362"></a>00362
	277	<a name="l00364"></a>00364 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( <span class="keyword">const</span> mat &Val ) <span class="keyword">const</span>;
	278	<a name="l00365"></a>00365
	279	<a name="l00367"></a>00367 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( <span class="keyword">const</span> Array<vec> &Avec ) <span class="keyword">const</span>;
	280	<a name="l00368"></a>00368
	281	<a name="l00370"></a>00370 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<mpdf></a> <a class="code" href="classbdm_1_1epdf.html#a1499d35b79bce0cfa64fc5cafb9c03b2" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) <span class="keyword">const</span>;
	282	<a name="l00371"></a>00371
	283	<a name="l00373"></a>00373 <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> <a class="code" href="classbdm_1_1epdf.html#aa84b05f5293cab2aeb4e07faffa60906" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) <span class="keyword">const</span>;
	284	<a name="l00374"></a>00374
	285	<a name="l00376"></a><a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75">00376</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>()<span class="keyword"> const </span>{
	286	<a name="l00377"></a>00377 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"not implemneted"</span> );
	287	<a name="l00378"></a>00378 <span class="keywordflow">return</span> vec();
	288	<a name="l00379"></a>00379 }
	289	<a name="l00380"></a>00380
	290	<a name="l00382"></a><a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c">00382</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()<span class="keyword"> const </span>{
	291	<a name="l00383"></a>00383 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"not implemneted"</span> );
	292	<a name="l00384"></a>00384 <span class="keywordflow">return</span> vec();
	293	<a name="l00385"></a>00385 }
	294	<a name="l00386"></a>00386
	295	<a name="l00388"></a><a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539">00388</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( vec &lb, vec &ub, <span class="keywordtype">double</span> percentage = 0.95 )<span class="keyword"> const </span>{
	296	<a name="l00389"></a>00389 vec mea = <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>();
	297	<a name="l00390"></a>00390 vec std = sqrt ( <a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>() );
	298	<a name="l00391"></a>00391 lb = mea - 2 * std;
	299	<a name="l00392"></a>00392 ub = mea + 2 * std;
	300	<a name="l00393"></a>00393 };
	301	<a name="l00395"></a>00395
	302	<a name="l00401"></a>00401
	303	<a name="l00403"></a><a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff">00403</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv0 ) {
	304	<a name="l00404"></a>00404 <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> = rv0;
	305	<a name="l00405"></a>00405 }
	306	<a name="l00406"></a>00406
	307	<a name="l00408"></a><a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9">00408</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>()<span class="keyword"> const </span>{
	308	<a name="l00409"></a>00409 <span class="keywordtype">bool</span> b = ( <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> == <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
	309	<a name="l00410"></a>00410 <span class="keywordflow">return</span> b;
	310	<a name="l00411"></a>00411 }
	311	<a name="l00412"></a>00412
	312	<a name="l00414"></a><a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21">00414</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>()<span class="keyword"> const </span>{
	313	<a name="l00415"></a>00415 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>(), <span class="stringliteral">""</span> );
	314	<a name="l00416"></a>00416 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;
	315	<a name="l00417"></a>00417 }
314	316	<a name="l00419"></a>00419
315		<a name="l00420"></a>00420 <span class="keyword">public</span>:
316		<a name="l00423"></a>00423
317		<a name="l00424"></a>00424 <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>() : <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> (0), <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>(), ep (NULL) { }
318		<a name="l00425"></a>00425
319		<a name="l00426"></a>00426 mpdf (<span class="keyword">const</span> mpdf &m) : <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> (m.<a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>), <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> (m.<a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>), ep (m.ep) { }
320		<a name="l00428"></a>00428
321		<a name="l00431"></a>00431
322		<a name="l00433"></a><a class="code" href="classbdm_1_1mpdf.html#af0c1db6fcbb3aae2dd6123884457a367">00433</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#af0c1db6fcbb3aae2dd6123884457a367" title="Returns a sample from the density conditioned on cond, .">samplecond</a> (<span class="keyword">const</span> vec &cond) {
323		<a name="l00434"></a>00434 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>);
324		<a name="l00435"></a>00435 <span class="keywordflow">return</span> vec();
325		<a name="l00436"></a>00436 }
326		<a name="l00437"></a>00437
327		<a name="l00439"></a>00439 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf.html#a6e497d501331057309d2fddf63259d1a" title="Returns.">samplecond_m</a> (<span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N);
	317	<a name="l00422"></a>00422
	318	<a name="l00424"></a><a class="code" href="classbdm_1_1epdf.html#a7083a65f7b7a0d0d13b2c516bd2ec29c">00424</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>()<span class="keyword"> const </span>{
	319	<a name="l00425"></a>00425 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;
	320	<a name="l00426"></a>00426 }
	321	<a name="l00434"></a><a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725">00434</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &<span class="keyword">set</span> ) {
	322	<a name="l00435"></a>00435 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr<RV></a> r = UI::build<RV> ( <span class="keyword">set</span>, <span class="stringliteral">"rv"</span>, UI::optional );
	323	<a name="l00436"></a>00436 <span class="keywordflow">if</span> ( r ) {
	324	<a name="l00437"></a>00437 <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( *r );
	325	<a name="l00438"></a>00438 }
	326	<a name="l00439"></a>00439 }
328	327	<a name="l00440"></a>00440
329		<a name="l00442"></a><a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b">00442</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> (<span class="keyword">const</span> vec &dt, <span class="keyword">const</span> vec &cond) {
330		<a name="l00443"></a>00443 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>);
331		<a name="l00444"></a>00444 <span class="keywordflow">return</span> 0.0;
332		<a name="l00445"></a>00445 }
333		<a name="l00446"></a>00446
334		<a name="l00448"></a><a class="code" href="classbdm_1_1mpdf.html#a0b0ed1ed663071bb7cf4a1349eb94fcb">00448</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#a0b0ed1ed663071bb7cf4a1349eb94fcb" title="Matrix version of evallogcond.">evallogcond_m</a> (<span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond) {
335		<a name="l00449"></a>00449 vec v(Dt.cols());
336		<a name="l00450"></a>00450 <span class="keywordflow">for</span>(<span class="keywordtype">int</span> i=0;i<Dt.cols();i++){v(i)= <a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a>(Dt.get_col(i),cond);}
337		<a name="l00451"></a>00451 <span class="keywordflow">return</span> v;
338		<a name="l00452"></a>00452 }
339		<a name="l00453"></a>00453
340		<a name="l00455"></a><a class="code" href="classbdm_1_1mpdf.html#a2a0d03756f59924fd038980ee60bd904">00455</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#a2a0d03756f59924fd038980ee60bd904" title="Array&lt;vec&gt; version of evallogcond.">evallogcond_m</a> (<span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond) {
341		<a name="l00456"></a>00456 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>);
342		<a name="l00457"></a>00457 <span class="keywordflow">return</span> vec();
343		<a name="l00458"></a>00458 }
344		<a name="l00459"></a>00459
345		<a name="l00462"></a>00462
346		<a name="l00463"></a>00463 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> _rv()<span class="keyword"> const </span>{
347		<a name="l00464"></a>00464 <span class="keywordflow">return</span> ep-><a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();
348		<a name="l00465"></a>00465 }
349		<a name="l00466"></a>00466 RV _rvc() {
350		<a name="l00467"></a>00467 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;
351		<a name="l00468"></a>00468 }
352		<a name="l00469"></a>00469
353		<a name="l00470"></a>00470 <span class="keywordtype">int</span> dimension()<span class="keyword"> const </span>{
354		<a name="l00471"></a>00471 <span class="keywordflow">return</span> ep->dimension();
355		<a name="l00472"></a>00472 }
356		<a name="l00473"></a>00473 <span class="keywordtype">int</span> dimensionc() {
357		<a name="l00474"></a>00474 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;
358		<a name="l00475"></a>00475 }
	328	<a name="l00441"></a>00441 };
	329	<a name="l00442"></a>00442 SHAREDPTR ( epdf );
	330	<a name="l00443"></a>00443
	331	<a name="l00445"></a><a class="code" href="classbdm_1_1mpdf.html">00445</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
	332	<a name="l00446"></a>00446 <span class="keyword">protected</span>:
	333	<a name="l00448"></a><a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6">00448</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;
	334	<a name="l00450"></a><a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288">00450</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;
	335	<a name="l00451"></a>00451 <span class="keyword">private</span>:
	336	<a name="l00453"></a>00453 <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* ep;
	337	<a name="l00454"></a>00454
	338	<a name="l00455"></a>00455 <span class="keyword">protected</span>:
	339	<a name="l00457"></a><a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e">00457</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &iepdf ) {
	340	<a name="l00458"></a>00458 ep = &iepdf;
	341	<a name="l00459"></a>00459 }
	342	<a name="l00461"></a><a class="code" href="classbdm_1_1mpdf.html#a7555b377f8b5895c9b759c9628ee3e20">00461</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a7555b377f8b5895c9b759c9628ee3e20" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> *iepdfp ) {
	343	<a name="l00462"></a>00462 ep = iepdfp;
	344	<a name="l00463"></a>00463 }
	345	<a name="l00464"></a>00464
	346	<a name="l00465"></a>00465 <span class="keyword">public</span>:
	347	<a name="l00468"></a>00468
	348	<a name="l00469"></a>00469 <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>() : <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ( 0 ), <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>(), ep ( NULL ) { }
	349	<a name="l00470"></a>00470
	350	<a name="l00471"></a>00471 mpdf ( <span class="keyword">const</span> mpdf &m ) : <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ( m.<a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ), <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ( m.<a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ), ep ( m.ep ) { }
	351	<a name="l00473"></a>00473
359	352	<a name="l00476"></a>00476
360		<a name="l00486"></a>00486 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a30a0bceb948e287d497c578e371b1667">from_setting</a> (<span class="keyword">const</span> Setting &<span class="keyword">set</span>);
361		<a name="l00488"></a>00488
362		<a name="l00491"></a>00491 <span class="keywordtype">void</span> set_rvc (<span class="keyword">const</span> RV &rvc0) {
363		<a name="l00492"></a>00492 <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> = rvc0;
364		<a name="l00493"></a>00493 }
365		<a name="l00494"></a>00494 <span class="keywordtype">void</span> set_rv (<span class="keyword">const</span> RV &rv0) {
366		<a name="l00495"></a>00495 ep->set_rv (rv0);
367		<a name="l00496"></a>00496 }
368		<a name="l00497"></a>00497 <span class="keywordtype">bool</span> isnamed() {
369		<a name="l00498"></a>00498 <span class="keywordflow">return</span> (ep->isnamed()) && (<a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> == <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>._dsize());
370		<a name="l00499"></a>00499 }
371		<a name="l00501"></a>00501 };
372		<a name="l00502"></a>00502 SHAREDPTR(mpdf);
373		<a name="l00503"></a>00503
374		<a name="l00505"></a>00505 <span class="keyword">template</span> <<span class="keyword">class</span> EPDF>
375		<a name="l00506"></a><a class="code" href="classbdm_1_1mpdf__internal.html">00506</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf__internal.html" title="Mpdf with internal epdf that is modified by function condition.">mpdf_internal</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>
376		<a name="l00507"></a>00507 {
377		<a name="l00508"></a>00508 <span class="keyword">protected</span> :
378		<a name="l00510"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468">00510</a> EPDF <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>;
379		<a name="l00511"></a>00511 <span class="keyword">public</span>:
380		<a name="l00513"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f">00513</a> <a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f" title="constructor">mpdf_internal</a>() : <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>(), <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>() {<a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> (<a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>);}
381		<a name="l00514"></a>00514
382		<a name="l00517"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">00517</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (<span class="keyword">const</span> vec &cond) {
383		<a name="l00518"></a>00518 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>);
384		<a name="l00519"></a>00519 }
385		<a name="l00520"></a>00520
386		<a name="l00522"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a">00522</a> EPDF& <a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a" title="access function to iepdf">e</a>() {<span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>;}
	353	<a name="l00478"></a><a class="code" href="classbdm_1_1mpdf.html#af0c1db6fcbb3aae2dd6123884457a367">00478</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#af0c1db6fcbb3aae2dd6123884457a367" title="Returns a sample from the density conditioned on cond, .">samplecond</a> ( <span class="keyword">const</span> vec &cond ) {
	354	<a name="l00479"></a>00479 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> );
	355	<a name="l00480"></a>00480 <span class="keywordflow">return</span> vec();
	356	<a name="l00481"></a>00481 }
	357	<a name="l00482"></a>00482
	358	<a name="l00484"></a>00484 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf.html#a6e497d501331057309d2fddf63259d1a" title="Returns.">samplecond_m</a> ( <span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N );
	359	<a name="l00485"></a>00485
	360	<a name="l00487"></a><a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b">00487</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &dt, <span class="keyword">const</span> vec &cond ) {
	361	<a name="l00488"></a>00488 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> );
	362	<a name="l00489"></a>00489 <span class="keywordflow">return</span> 0.0;
	363	<a name="l00490"></a>00490 }
	364	<a name="l00491"></a>00491
	365	<a name="l00493"></a><a class="code" href="classbdm_1_1mpdf.html#a0b0ed1ed663071bb7cf4a1349eb94fcb">00493</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#a0b0ed1ed663071bb7cf4a1349eb94fcb" title="Matrix version of evallogcond.">evallogcond_m</a> ( <span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond ) {
	366	<a name="l00494"></a>00494 vec v ( Dt.cols() );
	367	<a name="l00495"></a>00495 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i < Dt.cols(); i++ ) {
	368	<a name="l00496"></a>00496 v ( i ) = <a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( Dt.get_col ( i ), cond );
	369	<a name="l00497"></a>00497 }
	370	<a name="l00498"></a>00498 <span class="keywordflow">return</span> v;
	371	<a name="l00499"></a>00499 }
	372	<a name="l00500"></a>00500
	373	<a name="l00502"></a><a class="code" href="classbdm_1_1mpdf.html#a2a0d03756f59924fd038980ee60bd904">00502</a> <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#a2a0d03756f59924fd038980ee60bd904" title="Array&lt;vec&gt; version of evallogcond.">evallogcond_m</a> ( <span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond ) {
	374	<a name="l00503"></a>00503 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> );
	375	<a name="l00504"></a>00504 <span class="keywordflow">return</span> vec();
	376	<a name="l00505"></a>00505 }
	377	<a name="l00506"></a>00506
	378	<a name="l00509"></a>00509
	379	<a name="l00510"></a>00510 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& _rv()<span class="keyword"> const </span>{
	380	<a name="l00511"></a>00511 <span class="keywordflow">return</span> ep-><a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();
	381	<a name="l00512"></a>00512 }
	382	<a name="l00513"></a>00513 <span class="keyword">const</span> RV& _rvc()<span class="keyword"> const </span>{
	383	<a name="l00514"></a>00514 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;
	384	<a name="l00515"></a>00515 }
	385	<a name="l00516"></a>00516
	386	<a name="l00517"></a>00517 <span class="keywordtype">int</span> dimension()<span class="keyword"> const </span>{
	387	<a name="l00518"></a>00518 <span class="keywordflow">return</span> ep->dimension();
	388	<a name="l00519"></a>00519 }
	389	<a name="l00520"></a>00520 <span class="keywordtype">int</span> dimensionc() {
	390	<a name="l00521"></a>00521 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;
	391	<a name="l00522"></a>00522 }
387	392	<a name="l00523"></a>00523
388		<a name="l00525"></a>00525 vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">samplecond</a> (<span class="keyword">const</span> vec &cond);
389		<a name="l00527"></a>00527 <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">evallogcond</a> (<span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond);
390		<a name="l00529"></a>00529 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> (<span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond);
391		<a name="l00531"></a>00531 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> (<span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond);
392		<a name="l00533"></a>00533 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">samplecond_m</a> (<span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N);
393		<a name="l00534"></a>00534 };
	393	<a name="l00533"></a>00533 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a30a0bceb948e287d497c578e371b1667" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &<span class="keyword">set</span> );
394	394	<a name="l00535"></a>00535
395		<a name="l00561"></a><a class="code" href="classbdm_1_1datalink.html">00561</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a>
396		<a name="l00562"></a>00562 {
397		<a name="l00563"></a>00563 <span class="keyword">protected</span>:
398		<a name="l00565"></a><a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c">00565</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>;
399		<a name="l00566"></a>00566
400		<a name="l00568"></a><a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045">00568</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>;
401		<a name="l00569"></a>00569
402		<a name="l00571"></a><a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb">00571</a> ivec <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>;
403		<a name="l00572"></a>00572
404		<a name="l00573"></a>00573 <span class="keyword">public</span>:
405		<a name="l00575"></a><a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2">00575</a> <a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a>() : <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> (0), <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> (0) { }
406		<a name="l00576"></a>00576
407		<a name="l00578"></a><a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd">00578</a> <a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd" title="Convenience constructor.">datalink</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up) {
408		<a name="l00579"></a>00579 <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> (rv, rv_up);
409		<a name="l00580"></a>00580 }
410		<a name="l00581"></a>00581
411		<a name="l00583"></a>00583 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up);
412		<a name="l00584"></a>00584
413		<a name="l00586"></a>00586 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> (<span class="keywordtype">int</span> ds, <span class="keywordtype">int</span> us, <span class="keyword">const</span> ivec &upind);
414		<a name="l00587"></a>00587
415		<a name="l00589"></a><a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5">00589</a> vec <a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &quot;Up&quot;.">pushdown</a> (<span class="keyword">const</span> vec &val_up) {
416		<a name="l00590"></a>00590 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (<a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>);
417		<a name="l00591"></a>00591 <span class="keywordflow">return</span> get_vec (val_up, <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>);
418		<a name="l00592"></a>00592 }
419		<a name="l00593"></a>00593
420		<a name="l00595"></a><a class="code" href="classbdm_1_1datalink.html#a610e966f2edb1fcd6a5b28267c571793">00595</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#a610e966f2edb1fcd6a5b28267c571793" title="Fill val of &quot;Up&quot; by my pieces.">pushup</a> (vec &val_up, <span class="keyword">const</span> vec &val) {
421		<a name="l00596"></a>00596 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (<a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">"Wrong val"</span>);
422		<a name="l00597"></a>00597 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (<a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span>);
423		<a name="l00598"></a>00598 set_subvector (val_up, <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>, val);
424		<a name="l00599"></a>00599 }
425		<a name="l00600"></a>00600 };
426		<a name="l00601"></a>00601
427		<a name="l00603"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00603</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a>
428		<a name="l00604"></a>00604 {
429		<a name="l00605"></a>00605 <span class="keyword">protected</span>:
430		<a name="l00607"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9">00607</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>;
431		<a name="l00608"></a>00608
432		<a name="l00610"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783">00610</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>;
433		<a name="l00611"></a>00611
434		<a name="l00613"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc">00613</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>;
435		<a name="l00614"></a>00614
436		<a name="l00615"></a>00615 <span class="keyword">public</span>:
437		<a name="l00617"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6">00617</a> <a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6" title="Constructor.">datalink_m2e</a>() : <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> (0) { }
	395	<a name="l00538"></a>00538 <span class="keywordtype">void</span> set_rvc ( <span class="keyword">const</span> RV &rvc0 ) {
	396	<a name="l00539"></a>00539 <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> = rvc0;
	397	<a name="l00540"></a>00540 }
	398	<a name="l00541"></a>00541 <span class="keywordtype">void</span> set_rv ( <span class="keyword">const</span> RV &rv0 ) {
	399	<a name="l00542"></a>00542 ep->set_rv ( rv0 );
	400	<a name="l00543"></a>00543 }
	401	<a name="l00544"></a>00544 <span class="keywordtype">bool</span> isnamed() {
	402	<a name="l00545"></a>00545 <span class="keywordflow">return</span> ( ep->isnamed() ) && ( <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> == <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>._dsize() );
	403	<a name="l00546"></a>00546 }
	404	<a name="l00548"></a>00548 };
	405	<a name="l00549"></a>00549 SHAREDPTR ( mpdf );
	406	<a name="l00550"></a>00550
	407	<a name="l00552"></a>00552 <span class="keyword">template</span> <<span class="keyword">class</span> EPDF>
	408	<a name="l00553"></a><a class="code" href="classbdm_1_1mpdf__internal.html">00553</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf__internal.html" title="Mpdf with internal epdf that is modified by function condition.">mpdf_internal</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a> {
	409	<a name="l00554"></a>00554 <span class="keyword">protected</span> :
	410	<a name="l00556"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468">00556</a> EPDF <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>;
	411	<a name="l00557"></a>00557 <span class="keyword">public</span>:
	412	<a name="l00559"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f">00559</a> <a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f" title="constructor">mpdf_internal</a>() : <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>(), <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>() {
	413	<a name="l00560"></a>00560 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a> );
	414	<a name="l00561"></a>00561 }
	415	<a name="l00562"></a>00562
	416	<a name="l00565"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">00565</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( <span class="keyword">const</span> vec &cond ) {
	417	<a name="l00566"></a>00566 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> );
	418	<a name="l00567"></a>00567 }
	419	<a name="l00568"></a>00568
	420	<a name="l00570"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a">00570</a> EPDF& <a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a" title="access function to iepdf">e</a>() {
	421	<a name="l00571"></a>00571 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>;
	422	<a name="l00572"></a>00572 }
	423	<a name="l00573"></a>00573
	424	<a name="l00575"></a>00575 vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">samplecond</a> ( <span class="keyword">const</span> vec &cond );
	425	<a name="l00577"></a>00577 <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">evallogcond</a> ( <span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond );
	426	<a name="l00579"></a>00579 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> ( <span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond );
	427	<a name="l00581"></a>00581 <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> ( <span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond );
	428	<a name="l00583"></a>00583 <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">samplecond_m</a> ( <span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N );
	429	<a name="l00584"></a>00584 };
	430	<a name="l00585"></a>00585
	431	<a name="l00611"></a><a class="code" href="classbdm_1_1datalink.html">00611</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> {
	432	<a name="l00612"></a>00612 <span class="keyword">protected</span>:
	433	<a name="l00614"></a><a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c">00614</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>;
	434	<a name="l00615"></a>00615
	435	<a name="l00617"></a><a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045">00617</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>;
438	436	<a name="l00618"></a>00618
439		<a name="l00620"></a>00620 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#aadd918bf877c48714cff51ee4ad989b0" title="Set connection between vectors.">set_connection</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up);
	437	<a name="l00620"></a><a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb">00620</a> ivec <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>;
440	438	<a name="l00621"></a>00621
441		<a name="l00623"></a>00623 vec <a class="code" href="classbdm_1_1datalink__m2e.html#a7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> (<span class="keyword">const</span> vec &val_up);
442		<a name="l00624"></a>00624
443		<a name="l00626"></a>00626 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#ab29bc3c7bf2a1d87e77ccaa793d097d5" title="Copy corresponding values to Up.condition.">pushup_cond</a> (vec &val_up, <span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond);
444		<a name="l00627"></a>00627 };
445		<a name="l00628"></a>00628
446		<a name="l00631"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00631</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a>
447		<a name="l00632"></a>00632 {
448		<a name="l00633"></a>00633 <span class="keyword">protected</span>:
449		<a name="l00635"></a><a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d">00635</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>;
450		<a name="l00637"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5">00637</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>;
451		<a name="l00638"></a>00638
452		<a name="l00639"></a>00639 <span class="keyword">public</span>:
453		<a name="l00641"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287">00641</a> <a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {};
454		<a name="l00643"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4">00643</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">set_connection</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc_up) {
455		<a name="l00644"></a>00644 <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">datalink_m2e::set_connection</a> (rv, rvc, rv_up);
456		<a name="l00645"></a>00645 <span class="comment">//establish c2c connection</span>
457		<a name="l00646"></a>00646 rvc.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> (rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>);
458		<a name="l00647"></a>00647 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (<a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>.length() + <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>.length() == <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">"cond is not fully given"</span>);
459		<a name="l00648"></a>00648 }
460		<a name="l00649"></a>00649
461		<a name="l00651"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90">00651</a> vec <a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &quot;Up&quot;.">get_cond</a> (<span class="keyword">const</span> vec &val_up, <span class="keyword">const</span> vec &cond_up) {
462		<a name="l00652"></a>00652 vec tmp (<a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>);
463		<a name="l00653"></a>00653 set_subvector (tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, val_up (<a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>));
464		<a name="l00654"></a>00654 set_subvector (tmp, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, cond_up (<a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>));
465		<a name="l00655"></a>00655 <span class="keywordflow">return</span> tmp;
466		<a name="l00656"></a>00656 }
467		<a name="l00658"></a>00658
468		<a name="l00659"></a>00659 };
469		<a name="l00660"></a>00660
470		<a name="l00666"></a><a class="code" href="classbdm_1_1logger.html">00666</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a>
471		<a name="l00667"></a>00667 {
472		<a name="l00668"></a>00668 <span class="keyword">protected</span>:
473		<a name="l00670"></a><a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f">00670</a> Array<RV> <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>;
474		<a name="l00672"></a><a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02">00672</a> Array<string> <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>;
475		<a name="l00673"></a>00673 <span class="keyword">public</span>:
476		<a name="l00675"></a><a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf">00675</a> <a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a>() : <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> (0), <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> (0) {}
477		<a name="l00676"></a>00676
478		<a name="l00679"></a><a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">00679</a> <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keywordtype">string</span> prefix = <span class="stringliteral">""</span>) {
479		<a name="l00680"></a>00680 <span class="keywordtype">int</span> id;
480		<a name="l00681"></a>00681 <span class="keywordflow">if</span> (rv._dsize() > 0) {
481		<a name="l00682"></a>00682 <span class="keywordtype">id</span> = <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length();
482		<a name="l00683"></a>00683 <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> = concat (<a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix); <span class="comment">// diff</span>
483		<a name="l00684"></a>00684 <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length (<span class="keywordtype">id</span> + 1, <span class="keyword">true</span>);
484		<a name="l00685"></a>00685 <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> (<span class="keywordtype">id</span>) = rv;
485		<a name="l00686"></a>00686 } <span class="keywordflow">else</span> {
486		<a name="l00687"></a>00687 <span class="keywordtype">id</span> = -1;
487		<a name="l00688"></a>00688 }
488		<a name="l00689"></a>00689 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span>
489		<a name="l00690"></a>00690 }
490		<a name="l00691"></a>00691
491		<a name="l00693"></a><a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309">00693</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &v) {<a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a>(<span class="stringliteral">"Not implemented"</span>);};
492		<a name="l00695"></a><a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6">00695</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6" title="log this double">logit</a> (<span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &d) {<a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a>(<span class="stringliteral">"Not implemented"</span>);};
493		<a name="l00696"></a>00696
494		<a name="l00698"></a><a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99">00698</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99" title="Shifts storage position for another time step.">step</a>() {<a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a>(<span class="stringliteral">"Not implemneted"</span>);};
495		<a name="l00699"></a>00699
496		<a name="l00701"></a><a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d">00701</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {};
497		<a name="l00702"></a>00702
498		<a name="l00704"></a><a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc">00704</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {};
499		<a name="l00705"></a>00705
500		<a name="l00706"></a>00706 };
501		<a name="l00707"></a>00707
502		<a name="l00711"></a><a class="code" href="classbdm_1_1mepdf.html">00711</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>
503		<a name="l00712"></a>00712 {
504		<a name="l00714"></a>00714 <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> iepdf;
505		<a name="l00715"></a>00715 <span class="keyword">public</span>:
506		<a name="l00717"></a><a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155">00717</a> <a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>() { }
507		<a name="l00719"></a><a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c">00719</a> <a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c" title="Set internal shared pointer.">mepdf</a> (<a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> em) {
508		<a name="l00720"></a>00720 iepdf = em;
509		<a name="l00721"></a>00721 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> (*iepdf.<a class="code" href="classbdm_1_1shared__ptr.html#a37ebcfb6750dd7b5630f1d2354c07a96">get</a>());
510		<a name="l00722"></a>00722 <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> = 0;
511		<a name="l00723"></a>00723 }
512		<a name="l00724"></a>00724
513		<a name="l00726"></a><a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e">00726</a> vec <a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e" title="empty">samplecond</a>(<span class="keyword">const</span> vec &cond){<span class="keywordflow">return</span> iepdf->sample();}
514		<a name="l00727"></a><a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b">00727</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a>(<span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond){<span class="keywordflow">return</span> iepdf->evallog(val);}
515		<a name="l00728"></a>00728
516		<a name="l00736"></a>00736 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#a27ef18a3e3b1b5de02739d1324bf25fb">from_setting</a> (<span class="keyword">const</span> Setting &<span class="keyword">set</span>);
517		<a name="l00737"></a>00737 };
518		<a name="l00738"></a>00738 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> (mepdf);
519		<a name="l00739"></a>00739 SHAREDPTR (mepdf);
520		<a name="l00740"></a>00740
521		<a name="l00742"></a>00742 RV get_composite_rv ( <span class="keyword">const</span> Array<shared_ptr<mpdf> > &mpdfs, <span class="keywordtype">bool</span> checkoverlap = <span class="keyword">false</span> );
522		<a name="l00743"></a>00743
523		<a name="l00751"></a><a class="code" href="classbdm_1_1DS.html">00751</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a>
524		<a name="l00752"></a>00752 {
525		<a name="l00753"></a>00753 <span class="keyword">protected</span>:
526		<a name="l00754"></a>00754 <span class="keywordtype">int</span> dtsize;
527		<a name="l00755"></a>00755 <span class="keywordtype">int</span> utsize;
528		<a name="l00757"></a><a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec">00757</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>;
529		<a name="l00759"></a><a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702">00759</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span>
530		<a name="l00761"></a><a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867">00761</a> <span class="comment"></span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut;
531		<a name="l00762"></a>00762 <span class="keyword">public</span>:
532		<a name="l00764"></a><a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a">00764</a> <a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() : <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>() {};
533		<a name="l00765"></a>00765
534		<a name="l00767"></a><a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba">00767</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> (vec &dt) {
535		<a name="l00768"></a>00768 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"abstract class"</span>);
536		<a name="l00769"></a>00769 }
537		<a name="l00770"></a>00770
538		<a name="l00772"></a><a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832">00772</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a> (vec &dt, <span class="keyword">const</span> ivec &indeces) {
539		<a name="l00773"></a>00773 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"abstract class"</span>);
540		<a name="l00774"></a>00774 }
	439	<a name="l00622"></a>00622 <span class="keyword">public</span>:
	440	<a name="l00624"></a><a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2">00624</a> <a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a>() : <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> ( 0 ), <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> ( 0 ) { }
	441	<a name="l00625"></a>00625
	442	<a name="l00627"></a><a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd">00627</a> <a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd" title="Convenience constructor.">datalink</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up ) {
	443	<a name="l00628"></a>00628 <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up );
	444	<a name="l00629"></a>00629 }
	445	<a name="l00630"></a>00630
	446	<a name="l00632"></a>00632 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up );
	447	<a name="l00633"></a>00633
	448	<a name="l00635"></a>00635 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keywordtype">int</span> ds, <span class="keywordtype">int</span> us, <span class="keyword">const</span> ivec &upind );
	449	<a name="l00636"></a>00636
	450	<a name="l00638"></a><a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5">00638</a> vec <a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &quot;Up&quot;.">pushdown</a> ( <span class="keyword">const</span> vec &val_up ) {
	451	<a name="l00639"></a>00639 vec tmp ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> );
	452	<a name="l00640"></a>00640 <a class="code" href="classbdm_1_1datalink.html#abfc15c5e565d4dc1d0110deb5e8c3e6b" title="Get val for vector val_down from val of &quot;Up&quot;.">filldown</a> ( val_up, tmp );
	453	<a name="l00641"></a>00641 <span class="keywordflow">return</span> tmp;
	454	<a name="l00642"></a>00642 }
	455	<a name="l00644"></a><a class="code" href="classbdm_1_1datalink.html#abfc15c5e565d4dc1d0110deb5e8c3e6b">00644</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#abfc15c5e565d4dc1d0110deb5e8c3e6b" title="Get val for vector val_down from val of &quot;Up&quot;.">filldown</a> ( <span class="keyword">const</span> vec &val_up, vec &val_down ) {
	456	<a name="l00645"></a>00645 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span> );
	457	<a name="l00646"></a>00646 val_down = val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> );
	458	<a name="l00647"></a>00647 }
	459	<a name="l00649"></a><a class="code" href="classbdm_1_1datalink.html#a610e966f2edb1fcd6a5b28267c571793">00649</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#a610e966f2edb1fcd6a5b28267c571793" title="Fill val of &quot;Up&quot; by my pieces.">pushup</a> ( vec &val_up, <span class="keyword">const</span> vec &val ) {
	460	<a name="l00650"></a>00650 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">"Wrong val"</span> );
	461	<a name="l00651"></a>00651 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">"Wrong val_up"</span> );
	462	<a name="l00652"></a>00652 set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>, val );
	463	<a name="l00653"></a>00653 }
	464	<a name="l00655"></a><a class="code" href="classbdm_1_1datalink.html#a340c5a253544a1dc2fd87932a5341c32">00655</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a340c5a253544a1dc2fd87932a5341c32" title="access functions">_upsize</a>() {
	465	<a name="l00656"></a>00656 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a>;
	466	<a name="l00657"></a>00657 }
	467	<a name="l00659"></a><a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698">00659</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>() {
	468	<a name="l00660"></a>00660 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>;
	469	<a name="l00661"></a>00661 }
	470	<a name="l00662"></a>00662 };
	471	<a name="l00663"></a>00663
	472	<a name="l00666"></a><a class="code" href="classbdm_1_1datalink__part.html">00666</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> {
	473	<a name="l00667"></a>00667 <span class="keyword">protected</span>:
	474	<a name="l00669"></a><a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943">00669</a> ivec <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>;
	475	<a name="l00670"></a>00670 <span class="keyword">public</span>:
	476	<a name="l00671"></a>00671 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__part.html#a6cef1083755c27e4476501abe6f49dce" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up );
	477	<a name="l00673"></a><a class="code" href="classbdm_1_1datalink__part.html#aaba9b673ef82584e1bc06cc7a32b0a59">00673</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__part.html#aaba9b673ef82584e1bc06cc7a32b0a59" title="Get val for vector val_down from val of &quot;Up&quot;.">filldown</a> ( <span class="keyword">const</span> vec &val_up, vec &val_down ) {
	478	<a name="l00674"></a>00674 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>, val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> ) );
	479	<a name="l00675"></a>00675 }
	480	<a name="l00676"></a>00676 };
	481	<a name="l00677"></a>00677
	482	<a name="l00682"></a><a class="code" href="classbdm_1_1datalink__buffered.html">00682</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a> {
	483	<a name="l00683"></a>00683 <span class="keyword">protected</span>:
	484	<a name="l00685"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988">00685</a> vec <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>;
	485	<a name="l00687"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc">00687</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>;
	486	<a name="l00689"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7">00689</a> ivec <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>;
	487	<a name="l00691"></a><a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5">00691</a> ivec <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a>;
	488	<a name="l00693"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc">00693</a> ivec <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>;
	489	<a name="l00694"></a>00694 <span class="keyword">public</span>:
	490	<a name="l00695"></a>00695
	491	<a name="l00696"></a>00696 <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a>() : <a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a>(), <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> ( 0 ), <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a> ( 0 ), <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a> ( 0 ) {};
	492	<a name="l00698"></a><a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f">00698</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f" title="push current data to history">step</a> ( <span class="keyword">const</span> vec &val_up ) {
	493	<a name="l00699"></a>00699 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() > 0 ) {
	494	<a name="l00700"></a>00700 <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>.shift_right ( 0, <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
	495	<a name="l00701"></a>00701 <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>.set_subvector ( 0, val_up(<a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>) ); <span class="comment">// write U after Drv</span>
	496	<a name="l00702"></a>00702 }
	497	<a name="l00703"></a>00703 }
	498	<a name="l00705"></a><a class="code" href="classbdm_1_1datalink__buffered.html#ae665d66cb42862c1181645c438110a96">00705</a> vec <a class="code" href="classbdm_1_1datalink__buffered.html#ae665d66cb42862c1181645c438110a96" title="Get val for myself from val of &quot;Up&quot;.">pushdown</a> ( <span class="keyword">const</span> vec &val_up ) {
	499	<a name="l00706"></a>00706 vec tmp ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> );
	500	<a name="l00707"></a>00707 <a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &quot;Up&quot;.">filldown</a> ( val_up, tmp );
	501	<a name="l00708"></a>00708 <span class="keywordflow">return</span> tmp;
	502	<a name="l00709"></a>00709 }
	503	<a name="l00710"></a>00710
	504	<a name="l00711"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f">00711</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &quot;Up&quot;.">filldown</a> ( <span class="keyword">const</span> vec &val_up, vec &val_down ) {
	505	<a name="l00712"></a>00712 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( val_down.length() >= <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>, <span class="stringliteral">"short val_down"</span> );
	506	<a name="l00713"></a>00713
	507	<a name="l00714"></a>00714 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>, val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> ) ); <span class="comment">// copy direct values</span>
	508	<a name="l00715"></a>00715 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>, <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> ( <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a> ) ); <span class="comment">// copy delayed values</span>
	509	<a name="l00716"></a>00716 }
	510	<a name="l00717"></a>00717
	511	<a name="l00718"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a">00718</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up ) {
	512	<a name="l00719"></a>00719 <span class="comment">// create link between up and down</span>
	513	<a name="l00720"></a>00720 <a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">datalink_part::set_connection</a> ( rv, rv_up );
	514	<a name="l00721"></a>00721
	515	<a name="l00722"></a>00722 <span class="comment">// create rvs of history</span>
	516	<a name="l00723"></a>00723 <span class="comment">// we can store only what we get in rv_up - everything else is removed</span>
	517	<a name="l00724"></a>00724 ivec valid_ids = rv.<a class="code" href="classbdm_1_1RV.html#aa858d36d0264e1f1c89500531162fdf1" title="Find indices of self in another rv, ignore time,.">findself_ids</a> ( rv_up );
	518	<a name="l00725"></a>00725 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rv_hist = rv.<a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( find ( valid_ids >= 0 ) ); <span class="comment">// select only rvs that are in rv_up</span>
	519	<a name="l00726"></a>00726 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rv_hist0 =rv_hist.remove_time(); <span class="comment">// these RVs will form history at time =0</span>
	520	<a name="l00727"></a>00727 <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a> = rv_hist0.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a>(rv_up); <span class="comment">// indeces of elements of rv_up to be copied</span>
	521	<a name="l00728"></a>00728 <span class="comment">// now we need to know what is needed from Up</span>
	522	<a name="l00729"></a>00729 rv_hist = rv_hist.<a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e" title="return rvs with expanded delayes and sorted in the order of:">expand_delayes</a>(); <span class="comment">// full regressor - including time 0</span>
	523	<a name="l00730"></a>00730 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>=rv_hist.<a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a>(rv_hist0); <span class="comment">// remove time 0</span>
	524	<a name="l00731"></a>00731 <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> = zeros ( <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
	525	<a name="l00732"></a>00732
	526	<a name="l00733"></a>00733 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( rv, <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a>, <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a> );
	527	<a name="l00734"></a>00734
	528	<a name="l00735"></a>00735 <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>.length() + <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>.length();
	529	<a name="l00736"></a>00736 <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &quot;Up&quot; should be.">upsize</a> = <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>.length();
	530	<a name="l00737"></a>00737 }
	531	<a name="l00738"></a>00738 };
	532	<a name="l00739"></a>00739
	533	<a name="l00741"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html">00741</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__2to1__buffered.html" title="buffered datalink from 2 vectors to 1">datalink_2to1_buffered</a> {
	534	<a name="l00742"></a>00742 <span class="keyword">protected</span>:
	535	<a name="l00743"></a>00743 <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> dl1;
	536	<a name="l00744"></a>00744 <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> dl2;
	537	<a name="l00745"></a>00745 <span class="keyword">public</span>:
	538	<a name="l00747"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef1441b4885ae4d8e95b3ff28e575364">00747</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef1441b4885ae4d8e95b3ff28e575364" title="set connection between RVs">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up1, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up2 ) {
	539	<a name="l00748"></a>00748 dl1.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up1 );
	540	<a name="l00749"></a>00749 dl2.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up2 );
	541	<a name="l00750"></a>00750 }
	542	<a name="l00751"></a>00751 <span class="keywordtype">void</span> filldown ( <span class="keyword">const</span> vec &val1, <span class="keyword">const</span> vec &val2, vec &val_down ) {
	543	<a name="l00752"></a>00752 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( val_down.length() >= dl1.<a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>() + dl2.<a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>(), <span class="stringliteral">"short val_down"</span> );
	544	<a name="l00753"></a>00753 dl1.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &quot;Up&quot;.">filldown</a> ( val1, val_down );
	545	<a name="l00754"></a>00754 dl2.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &quot;Up&quot;.">filldown</a> ( val2, val_down );
	546	<a name="l00755"></a>00755 }
	547	<a name="l00756"></a>00756 <span class="keywordtype">void</span> step ( <span class="keyword">const</span> vec &dt, <span class="keyword">const</span> vec &ut ) {
	548	<a name="l00757"></a>00757 dl1.step ( dt );
	549	<a name="l00758"></a>00758 dl2.step ( ut );
	550	<a name="l00759"></a>00759 }
	551	<a name="l00760"></a>00760 };
	552	<a name="l00761"></a>00761
	553	<a name="l00762"></a>00762
	554	<a name="l00763"></a>00763
	555	<a name="l00765"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00765</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> {
	556	<a name="l00766"></a>00766 <span class="keyword">protected</span>:
	557	<a name="l00768"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9">00768</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>;
	558	<a name="l00769"></a>00769
	559	<a name="l00771"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783">00771</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>;
	560	<a name="l00772"></a>00772
	561	<a name="l00774"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc">00774</a> ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>;
541	562	<a name="l00775"></a>00775
542		<a name="l00777"></a><a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a">00777</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> (vec &ut) {
543		<a name="l00778"></a>00778 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"abstract class"</span>);
544		<a name="l00779"></a>00779 }
545		<a name="l00780"></a>00780
546		<a name="l00782"></a><a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d">00782</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d" title="Accepts action variables at specific indeces.">write</a> (vec &ut, <span class="keyword">const</span> ivec &indeces) {
547		<a name="l00783"></a>00783 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"abstract class"</span>);
548		<a name="l00784"></a>00784 }
	563	<a name="l00776"></a>00776 <span class="keyword">public</span>:
	564	<a name="l00778"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6">00778</a> <a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6" title="Constructor.">datalink_m2e</a>() : <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ( 0 ) { }
	565	<a name="l00779"></a>00779
	566	<a name="l00781"></a>00781 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#aadd918bf877c48714cff51ee4ad989b0" title="Set connection between vectors.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up );
	567	<a name="l00782"></a>00782
	568	<a name="l00784"></a>00784 vec <a class="code" href="classbdm_1_1datalink__m2e.html#a7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> ( <span class="keyword">const</span> vec &val_up );
549	569	<a name="l00785"></a>00785
550		<a name="l00787"></a>00787 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a9a14c64d881e838ddc3a5617ee8a973b" title="Moves from to , i.e. perfroms the actions and reads response of the system.">step</a>() = 0;
551		<a name="l00788"></a>00788
552		<a name="l00790"></a><a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e">00790</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) {
553		<a name="l00791"></a>00791 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (dtsize == <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize(), <span class="stringliteral">"invalid DS: dtsize different from Drv"</span>);
554		<a name="l00792"></a>00792 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> (utsize == <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>._dsize(), <span class="stringliteral">"invalid DS: utsize different from Urv"</span>);
555		<a name="l00793"></a>00793
556		<a name="l00794"></a>00794 <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a> = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <span class="stringliteral">""</span>);
557		<a name="l00795"></a>00795 L_ut = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">""</span>);
558		<a name="l00796"></a>00796 }
559		<a name="l00798"></a><a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf">00798</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) {
560		<a name="l00799"></a>00799 vec tmp (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize() + <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>._dsize());
561		<a name="l00800"></a>00800 <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> (tmp);
562		<a name="l00801"></a>00801 <span class="comment">// d is first in getdata</span>
563		<a name="l00802"></a>00802 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, tmp.left (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize()));
564		<a name="l00803"></a>00803 <span class="comment">// u follows after d in getdata</span>
565		<a name="l00804"></a>00804 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (L_ut, tmp.mid (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>._dsize(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>._dsize()));
566		<a name="l00805"></a>00805 }
567		<a name="l00807"></a><a class="code" href="classbdm_1_1DS.html#aed2113851294ed96abe60fc3f05aa660">00807</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#aed2113851294ed96abe60fc3f05aa660" title="access function">_drv</a>()<span class="keyword"> const </span>{
568		<a name="l00808"></a>00808 <span class="keywordflow">return</span> concat (<a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>);
569		<a name="l00809"></a>00809 }
570		<a name="l00811"></a><a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33">00811</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{
571		<a name="l00812"></a>00812 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>;
572		<a name="l00813"></a>00813 }
573		<a name="l00815"></a><a class="code" href="classbdm_1_1DS.html#a821297dfd839d68691324f024e57252f">00815</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a821297dfd839d68691324f024e57252f" title="set random rvariables">set_drv</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &drv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &urv) {
574		<a name="l00816"></a>00816 <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = drv;
575		<a name="l00817"></a>00817 <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv;
576		<a name="l00818"></a>00818 }
	570	<a name="l00787"></a>00787 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#ab29bc3c7bf2a1d87e77ccaa793d097d5" title="Copy corresponding values to Up.condition.">pushup_cond</a> ( vec &val_up, <span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond );
	571	<a name="l00788"></a>00788 };
	572	<a name="l00789"></a>00789
	573	<a name="l00792"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00792</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html" title="DataLink is a connection between mpdf and its superordinate (Up) This class links...">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a> {
	574	<a name="l00793"></a>00793 <span class="keyword">protected</span>:
	575	<a name="l00795"></a><a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d">00795</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>;
	576	<a name="l00797"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5">00797</a> ivec <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>;
	577	<a name="l00798"></a>00798
	578	<a name="l00799"></a>00799 <span class="keyword">public</span>:
	579	<a name="l00801"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287">00801</a> <a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {};
	580	<a name="l00803"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4">00803</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rvc_up ) {
	581	<a name="l00804"></a>00804 <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">datalink_m2e::set_connection</a> ( rv, rvc, rv_up );
	582	<a name="l00805"></a>00805 <span class="comment">//establish c2c connection</span>
	583	<a name="l00806"></a>00806 rvc.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a> );
	584	<a name="l00807"></a>00807 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>.length() + <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>.length() == <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">"cond is not fully given"</span> );
	585	<a name="l00808"></a>00808 }
	586	<a name="l00809"></a>00809
	587	<a name="l00811"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90">00811</a> vec <a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &quot;Up&quot;.">get_cond</a> ( <span class="keyword">const</span> vec &val_up, <span class="keyword">const</span> vec &cond_up ) {
	588	<a name="l00812"></a>00812 vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> );
	589	<a name="l00813"></a>00813 set_subvector ( tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a> ) );
	590	<a name="l00814"></a>00814 set_subvector ( tmp, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, cond_up ( <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a> ) );
	591	<a name="l00815"></a>00815 <span class="keywordflow">return</span> tmp;
	592	<a name="l00816"></a>00816 }
	593	<a name="l00818"></a>00818
577	594	<a name="l00819"></a>00819 };
578	595	<a name="l00820"></a>00820
579		<a name="l00842"></a><a class="code" href="classbdm_1_1BM.html">00842</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a>
580		<a name="l00843"></a>00843 {
581		<a name="l00844"></a>00844 <span class="keyword">protected</span>:
582		<a name="l00846"></a><a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed">00846</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;
583		<a name="l00848"></a><a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a">00848</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;
584		<a name="l00850"></a><a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee">00850</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>;
585		<a name="l00851"></a>00851 <span class="keyword">public</span>:
586		<a name="l00854"></a>00854
587		<a name="l00855"></a>00855 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>() : <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> (0), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> (true), <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (4), <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (4) {
588		<a name="l00856"></a>00856 <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> = -1;<span class="comment">/empty IDs/</span>
589		<a name="l00857"></a>00857 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> = 0;
590		<a name="l00858"></a>00858 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (0) = 1; <span class="comment">/log only mean/</span>
591		<a name="l00859"></a>00859 };
592		<a name="l00860"></a>00860 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &B) : <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> (B.<a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> (B.<a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> (B.<a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>) {}
593		<a name="l00863"></a><a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">00863</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">_copy_</a>()<span class="keyword"> const </span>{
594		<a name="l00864"></a>00864 <span class="keywordflow">return</span> NULL;
595		<a name="l00865"></a>00865 };
	596	<a name="l00826"></a><a class="code" href="classbdm_1_1logger.html">00826</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
	597	<a name="l00827"></a>00827 <span class="keyword">protected</span>:
	598	<a name="l00829"></a><a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f">00829</a> Array<RV> <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>;
	599	<a name="l00831"></a><a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02">00831</a> Array<string> <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>;
	600	<a name="l00832"></a>00832 <span class="keyword">public</span>:
	601	<a name="l00834"></a><a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf">00834</a> <a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a>() : <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( 0 ), <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> ( 0 ) {}
	602	<a name="l00835"></a>00835
	603	<a name="l00838"></a><a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">00838</a> <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &rv, <span class="keywordtype">string</span> prefix = <span class="stringliteral">""</span> ) {
	604	<a name="l00839"></a>00839 <span class="keywordtype">int</span> id;
	605	<a name="l00840"></a>00840 <span class="keywordflow">if</span> ( rv.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() > 0 ) {
	606	<a name="l00841"></a>00841 <span class="keywordtype">id</span> = <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length();
	607	<a name="l00842"></a>00842 <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> = concat ( <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix ); <span class="comment">// diff</span>
	608	<a name="l00843"></a>00843 <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length ( <span class="keywordtype">id</span> + 1, <span class="keyword">true</span> );
	609	<a name="l00844"></a>00844 <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( <span class="keywordtype">id</span> ) = rv;
	610	<a name="l00845"></a>00845 } <span class="keywordflow">else</span> {
	611	<a name="l00846"></a>00846 <span class="keywordtype">id</span> = -1;
	612	<a name="l00847"></a>00847 }
	613	<a name="l00848"></a>00848 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span>
	614	<a name="l00849"></a>00849 }
	615	<a name="l00850"></a>00850
	616	<a name="l00852"></a><a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309">00852</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &v ) {
	617	<a name="l00853"></a>00853 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> );
	618	<a name="l00854"></a>00854 };
	619	<a name="l00856"></a><a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6">00856</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6" title="log this double">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &d ) {
	620	<a name="l00857"></a>00857 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> );
	621	<a name="l00858"></a>00858 };
	622	<a name="l00859"></a>00859
	623	<a name="l00861"></a><a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99">00861</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99" title="Shifts storage position for another time step.">step</a>() {
	624	<a name="l00862"></a>00862 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemneted"</span> );
	625	<a name="l00863"></a>00863 };
	626	<a name="l00864"></a>00864
	627	<a name="l00866"></a><a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d">00866</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {};
596	628	<a name="l00867"></a>00867
	629	<a name="l00869"></a><a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc">00869</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {};
597	630	<a name="l00870"></a>00870
598		<a name="l00874"></a>00874 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> (<span class="keyword">const</span> vec &dt) = 0;
599		<a name="l00876"></a>00876 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> (<span class="keyword">const</span> mat &Dt);
600		<a name="l00879"></a><a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">00879</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> (<span class="keyword">const</span> vec &dt)<span class="keyword"> const </span>{
601		<a name="l00880"></a>00880 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>);
602		<a name="l00881"></a>00881 <span class="keywordflow">return</span> 0.0;
603		<a name="l00882"></a>00882 }
604		<a name="l00883"></a>00883
605		<a name="l00885"></a><a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae">00885</a> vec <a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> (<span class="keyword">const</span> mat &dt)<span class="keyword"> const </span>{
606		<a name="l00886"></a>00886 vec tmp (dt.cols());
607		<a name="l00887"></a>00887 <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < dt.cols(); i++) {
608		<a name="l00888"></a>00888 tmp (i) = <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> (dt.get_col (i));
609		<a name="l00889"></a>00889 }
610		<a name="l00890"></a>00890 <span class="keywordflow">return</span> tmp;
611		<a name="l00891"></a>00891 }
612		<a name="l00892"></a>00892
613		<a name="l00894"></a><a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba">00894</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a>()<span class="keyword"> const </span>{
614		<a name="l00895"></a>00895 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>);
615		<a name="l00896"></a>00896 <span class="keywordflow">return</span> NULL;
616		<a name="l00897"></a>00897 };
617		<a name="l00899"></a><a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912">00899</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs conditional density of 1-step ahead predictor .">predictor</a>()<span class="keyword"> const </span>{
618		<a name="l00900"></a>00900 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented"</span>);
619		<a name="l00901"></a>00901 <span class="keywordflow">return</span> NULL;
620		<a name="l00902"></a>00902 };
621		<a name="l00904"></a>00904
622		<a name="l00909"></a>00909
623		<a name="l00911"></a><a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb">00911</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>;
624		<a name="l00913"></a><a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33">00913</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{
625		<a name="l00914"></a>00914 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>;
626		<a name="l00915"></a>00915 }
627		<a name="l00916"></a>00916
628		<a name="l00918"></a><a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4">00918</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a> (<span class="keyword">const</span> vec &val) {
629		<a name="l00919"></a>00919 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> (<span class="stringliteral">"Not implemented!"</span>);
630		<a name="l00920"></a>00920 }
631		<a name="l00921"></a>00921
632		<a name="l00923"></a>00923
633		<a name="l00924"></a>00924
634		<a name="l00927"></a>00927
635		<a name="l00928"></a>00928 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& _drv()<span class="keyword"> const </span>{
636		<a name="l00929"></a>00929 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;
637		<a name="l00930"></a>00930 }
638		<a name="l00931"></a>00931 <span class="keywordtype">void</span> set_drv (<span class="keyword">const</span> RV &rv) {
639		<a name="l00932"></a>00932 <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> = rv;
640		<a name="l00933"></a>00933 }
641		<a name="l00934"></a>00934 <span class="keywordtype">void</span> set_rv (<span class="keyword">const</span> RV &rv) {
642		<a name="l00935"></a>00935 <span class="keyword">const_cast<</span>epdf&<span class="keyword">></span> (posterior()).set_rv (rv);
643		<a name="l00936"></a>00936 }
644		<a name="l00937"></a>00937 <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{
645		<a name="l00938"></a>00938 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;
646		<a name="l00939"></a>00939 }
647		<a name="l00940"></a>00940 <span class="keywordtype">void</span> set_evalll (<span class="keywordtype">bool</span> evl0) {
648		<a name="l00941"></a>00941 <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> = evl0;
649		<a name="l00942"></a>00942 }
650		<a name="l00943"></a>00943 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf& posterior() <span class="keyword">const</span> = 0;
651		<a name="l00945"></a>00945
652		<a name="l00948"></a>00948
653		<a name="l00950"></a><a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e">00950</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &quot;logbounds,logll&quot;.">set_options</a> (<span class="keyword">const</span> <span class="keywordtype">string</span> &opt) {
654		<a name="l00951"></a>00951 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (0) = 1;
655		<a name="l00952"></a>00952 <span class="keywordflow">if</span> (opt.find (<span class="stringliteral">"logbounds"</span>) != string::npos) {
656		<a name="l00953"></a>00953 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (1) = 1;
657		<a name="l00954"></a>00954 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (2) = 1;
658		<a name="l00955"></a>00955 }
659		<a name="l00956"></a>00956 <span class="keywordflow">if</span> (opt.find (<span class="stringliteral">"logll"</span>) != string::npos) {
660		<a name="l00957"></a>00957 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (3) = 1;
661		<a name="l00958"></a>00958 }
662		<a name="l00959"></a>00959 }
663		<a name="l00961"></a><a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca">00961</a> ivec <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>;
664		<a name="l00962"></a>00962
665		<a name="l00964"></a><a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207">00964</a> ivec <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>;
666		<a name="l00966"></a><a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827">00966</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a> (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L, <span class="keyword">const</span> <span class="keywordtype">string</span> &name = <span class="stringliteral">""</span>) {
667		<a name="l00967"></a>00967 <span class="comment">// internal</span>
668		<a name="l00968"></a>00968 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r;
669		<a name="l00969"></a>00969 <span class="keywordflow">if</span> (posterior().isnamed()) {
670		<a name="l00970"></a>00970 r = posterior().<a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();
671		<a name="l00971"></a>00971 } <span class="keywordflow">else</span> {
672		<a name="l00972"></a>00972 r = <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> (<span class="stringliteral">"est"</span>, posterior().dimension());
673		<a name="l00973"></a>00973 };
	631	<a name="l00871"></a>00871 };
	632	<a name="l00872"></a>00872
	633	<a name="l00876"></a><a class="code" href="classbdm_1_1mepdf.html">00876</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a> {
	634	<a name="l00878"></a>00878 <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> iepdf;
	635	<a name="l00879"></a>00879 <span class="keyword">public</span>:
	636	<a name="l00881"></a><a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155">00881</a> <a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>() { }
	637	<a name="l00883"></a><a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c">00883</a> <a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c" title="Set internal shared pointer.">mepdf</a> ( <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr<epdf></a> em ) {
	638	<a name="l00884"></a>00884 iepdf = em;
	639	<a name="l00885"></a>00885 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( *iepdf.<a class="code" href="classbdm_1_1shared__ptr.html#a37ebcfb6750dd7b5630f1d2354c07a96">get</a>() );
	640	<a name="l00886"></a>00886 <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> = 0;
	641	<a name="l00887"></a>00887 }
	642	<a name="l00888"></a>00888
	643	<a name="l00890"></a><a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e">00890</a> vec <a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e" title="empty">samplecond</a> ( <span class="keyword">const</span> vec &cond ) {
	644	<a name="l00891"></a>00891 <span class="keywordflow">return</span> iepdf->sample();
	645	<a name="l00892"></a>00892 }
	646	<a name="l00893"></a><a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b">00893</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &val, <span class="keyword">const</span> vec &cond ) {
	647	<a name="l00894"></a>00894 <span class="keywordflow">return</span> iepdf->evallog ( val );
	648	<a name="l00895"></a>00895 }
	649	<a name="l00896"></a>00896
	650	<a name="l00904"></a>00904 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#a27ef18a3e3b1b5de02739d1324bf25fb" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &<span class="keyword">set</span> );
	651	<a name="l00905"></a>00905 };
	652	<a name="l00906"></a>00906 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( mepdf );
	653	<a name="l00907"></a>00907 SHAREDPTR ( mepdf );
	654	<a name="l00908"></a>00908
	655	<a name="l00910"></a>00910 RV get_composite_rv ( <span class="keyword">const</span> Array<shared_ptr<mpdf> > &mpdfs, <span class="keywordtype">bool</span> checkoverlap = <span class="keyword">false</span> );
	656	<a name="l00911"></a>00911
	657	<a name="l00927"></a><a class="code" href="classbdm_1_1DS.html">00927</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
	658	<a name="l00928"></a>00928 <span class="keyword">protected</span>:
	659	<a name="l00930"></a><a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9">00930</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a>;
	660	<a name="l00932"></a><a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983">00932</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>;
	661	<a name="l00934"></a><a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd">00934</a> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd" title="size of output">ytsize</a>;
	662	<a name="l00936"></a><a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec">00936</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>;
	663	<a name="l00938"></a><a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702">00938</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span>
	664	<a name="l00940"></a><a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995">00940</a> <span class="comment"></span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>; <span class="comment">//</span>
	665	<a name="l00942"></a><a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867">00942</a> <span class="comment"></span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut;
	666	<a name="l00943"></a>00943 <span class="keyword">public</span>:
	667	<a name="l00945"></a><a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a">00945</a> <a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() : <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>(),<a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>() {};
	668	<a name="l00946"></a>00946
	669	<a name="l00948"></a><a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba">00948</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &dt ) {
	670	<a name="l00949"></a>00949 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"abstract class"</span> );
	671	<a name="l00950"></a>00950 }
	672	<a name="l00951"></a>00951
	673	<a name="l00953"></a><a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832">00953</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a> ( vec &dt, <span class="keyword">const</span> ivec &indeces ) {
	674	<a name="l00954"></a>00954 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"abstract class"</span> );
	675	<a name="l00955"></a>00955 }
	676	<a name="l00956"></a>00956
	677	<a name="l00958"></a><a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a">00958</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> ( vec &ut ) {
	678	<a name="l00959"></a>00959 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"abstract class"</span> );
	679	<a name="l00960"></a>00960 }
	680	<a name="l00961"></a>00961
	681	<a name="l00963"></a><a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d">00963</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d" title="Accepts action variables at specific indeces.">write</a> ( vec &ut, <span class="keyword">const</span> ivec &indeces ) {
	682	<a name="l00964"></a>00964 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"abstract class"</span> );
	683	<a name="l00965"></a>00965 }
	684	<a name="l00966"></a>00966
	685	<a name="l00968"></a>00968 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a9a14c64d881e838ddc3a5617ee8a973b" title="Moves from to , i.e. perfroms the actions and reads response of the system.">step</a>() = 0;
	686	<a name="l00969"></a>00969
	687	<a name="l00971"></a><a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e">00971</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L ) {
	688	<a name="l00972"></a>00972 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> == <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <span class="stringliteral">"invalid DS: dtsize ("</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> ) + <span class="stringliteral">") different from Drv "</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
	689	<a name="l00973"></a>00973 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> == <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <span class="stringliteral">"invalid DS: utsize ("</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> ) + <span class="stringliteral">") different from Urv "</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
674	690	<a name="l00974"></a>00974
675		<a name="l00975"></a>00975 <span class="comment">// Add mean value</span>
676		<a name="l00976"></a>00976 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (0)) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (0) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (r, name + <span class="stringliteral">"mean_"</span>);
677		<a name="l00977"></a>00977 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (1)) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (1) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (r, name + <span class="stringliteral">"lb_"</span>);
678		<a name="l00978"></a>00978 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (2)) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (2) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (r, name + <span class="stringliteral">"ub_"</span>);
679		<a name="l00979"></a>00979 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (3)) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (3) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> (<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> (<span class="stringliteral">"ll"</span>, 1), name); <span class="comment">//TODO: "local" RV</span>
680		<a name="l00980"></a>00980 }
681		<a name="l00981"></a>00981 <span class="keyword">virtual</span> <span class="keywordtype">void</span> logit (<a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L) {
682		<a name="l00982"></a>00982 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (0), posterior().mean());
683		<a name="l00983"></a>00983 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (1) \|\| <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (2)) { <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span>
684		<a name="l00984"></a>00984 vec ub, lb;
685		<a name="l00985"></a>00985 posterior().<a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> (lb, ub);
686		<a name="l00986"></a>00986 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (1), lb);
687		<a name="l00987"></a>00987 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (2), ub);
688		<a name="l00988"></a>00988 }
689		<a name="l00989"></a>00989 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> (3)) L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> (<a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> (3), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>);
690		<a name="l00990"></a>00990 }
691		<a name="l00992"></a><a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de">00992</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de" title="This method arrange instance properties according the data stored in the Setting...">from_setting</a> (<span class="keyword">const</span> Setting &<span class="keyword">set</span>){
692		<a name="l00993"></a>00993 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr<RV></a> r = UI::build<RV> ( <span class="keyword">set</span>, <span class="stringliteral">"drv"</span>, UI::optional );
693		<a name="l00994"></a>00994 <span class="keywordflow">if</span> (r) {
694		<a name="l00995"></a>00995 set_drv (*r);
695		<a name="l00996"></a>00996 }
696		<a name="l00997"></a>00997 <span class="keywordtype">string</span> opt;
697		<a name="l00998"></a>00998 <span class="keywordflow">if</span>(!<a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a>(opt, <span class="keyword">set</span>, <span class="stringliteral">"options"</span>, UI::optional)) {
698		<a name="l00999"></a>00999 <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &quot;logbounds,logll&quot;.">set_options</a>(opt);
699		<a name="l01000"></a>01000 }
700		<a name="l01001"></a>01001 }
701		<a name="l01002"></a>01002
702		<a name="l01003"></a>01003 };
703		<a name="l01004"></a>01004
704		<a name="l01005"></a>01005 <span class="keyword">typedef</span> Array<shared_ptr<epdf> > epdf_array;
705		<a name="l01006"></a>01006
706		<a name="l01007"></a>01007 <span class="keyword">typedef</span> Array<shared_ptr<mpdf> > mpdf_array;
707		<a name="l01008"></a>01008
708		<a name="l01009"></a>01009 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
709		<a name="l01010"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930">01010</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">mpdf_internal<EPDF>::samplecond</a> (<span class="keyword">const</span> vec &cond)
710		<a name="l01011"></a>01011 {
711		<a name="l01012"></a>01012 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond);
712		<a name="l01013"></a>01013 vec temp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample();
713		<a name="l01014"></a>01014 <span class="keywordflow">return</span> temp;
714		<a name="l01015"></a>01015 }
715		<a name="l01016"></a>01016
716		<a name="l01017"></a>01017 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
717		<a name="l01018"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823">01018</a> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">mpdf_internal<EPDF>::samplecond_m</a> (<span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N)
718		<a name="l01019"></a>01019 {
719		<a name="l01020"></a>01020 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond);
720		<a name="l01021"></a>01021 mat temp (dimension(), N);
721		<a name="l01022"></a>01022 vec smp (dimension());
722		<a name="l01023"></a>01023 <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < N; i++) {
723		<a name="l01024"></a>01024 smp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample();
724		<a name="l01025"></a>01025 temp.set_col (i, smp);
725		<a name="l01026"></a>01026 }
726		<a name="l01027"></a>01027
727		<a name="l01028"></a>01028 <span class="keywordflow">return</span> temp;
728		<a name="l01029"></a>01029 }
729		<a name="l01030"></a>01030
730		<a name="l01031"></a>01031 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
731		<a name="l01032"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948">01032</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">mpdf_internal<EPDF>::evallogcond</a> (<span class="keyword">const</span> vec &dt, <span class="keyword">const</span> vec &cond)
732		<a name="l01033"></a>01033 {
733		<a name="l01034"></a>01034 <span class="keywordtype">double</span> tmp;
734		<a name="l01035"></a>01035 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond);
735		<a name="l01036"></a>01036 tmp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog (dt);
736		<a name="l01037"></a>01037 <span class="keywordflow">return</span> tmp;
737		<a name="l01038"></a>01038 }
738		<a name="l01039"></a>01039
739		<a name="l01040"></a>01040 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
740		<a name="l01041"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c">01041</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal<EPDF>::evallogcond_m</a> (<span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond)
741		<a name="l01042"></a>01042 {
742		<a name="l01043"></a>01043 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond);
743		<a name="l01044"></a>01044 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m (Dt);
744		<a name="l01045"></a>01045 }
745		<a name="l01046"></a>01046
746		<a name="l01047"></a>01047 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
747		<a name="l01048"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae82db07ce8af02f29cfd81e014edb3db">01048</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal<EPDF>::evallogcond_m</a> (<span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond)
748		<a name="l01049"></a>01049 {
749		<a name="l01050"></a>01050 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> (cond);
750		<a name="l01051"></a>01051 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m (Dt);
751		<a name="l01052"></a>01052 }
	691	<a name="l00975"></a>00975 <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a> = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <span class="stringliteral">""</span> );
	692	<a name="l00976"></a>00976 L_ut = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">""</span> );
	693	<a name="l00977"></a>00977 }
	694	<a name="l00979"></a><a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf">00979</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L ) {
	695	<a name="l00980"></a>00980 vec tmp ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() + <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
	696	<a name="l00981"></a>00981 <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( tmp );
	697	<a name="l00982"></a>00982 <span class="comment">// d is first in getdata</span>
	698	<a name="l00983"></a>00983 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, tmp.left ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
	699	<a name="l00984"></a>00984 <span class="comment">// u follows after d in getdata</span>
	700	<a name="l00985"></a>00985 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( L_ut, tmp.mid ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
	701	<a name="l00986"></a>00986 }
	702	<a name="l00988"></a><a class="code" href="classbdm_1_1DS.html#a069497b610296be053d862a2493be0ce">00988</a> <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1DS.html#a069497b610296be053d862a2493be0ce" title="access function">_drv</a>()<span class="keyword"> const </span>{
	703	<a name="l00989"></a>00989 <span class="comment">// return concat (Drv, Urv);// why!!!</span>
	704	<a name="l00990"></a>00990 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>;<span class="comment">// why!!!</span>
	705	<a name="l00991"></a>00991 }
	706	<a name="l00993"></a><a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33">00993</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{
	707	<a name="l00994"></a>00994 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>;
	708	<a name="l00995"></a>00995 }
	709	<a name="l00997"></a><a class="code" href="classbdm_1_1DS.html#ac09878f86907329ac631a3df8755c558">00997</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1DS.html#ac09878f86907329ac631a3df8755c558" title="access function">_yrv</a>()<span class="keyword"> const </span>{
	710	<a name="l00998"></a>00998 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>;
	711	<a name="l00999"></a>00999 }
	712	<a name="l01001"></a><a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc">01001</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc" title="set random variables">set_drv</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &yrv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &urv) {
	713	<a name="l01002"></a>01002 <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a> = yrv;
	714	<a name="l01003"></a>01003 <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = concat(yrv,urv);
	715	<a name="l01004"></a>01004 <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv;
	716	<a name="l01005"></a>01005 }
	717	<a name="l01006"></a>01006 };
	718	<a name="l01007"></a>01007
	719	<a name="l01029"></a><a class="code" href="classbdm_1_1BM.html">01029</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
	720	<a name="l01030"></a>01030 <span class="keyword">protected</span>:
	721	<a name="l01032"></a><a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed">01032</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;
	722	<a name="l01034"></a><a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a">01034</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;
	723	<a name="l01036"></a><a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee">01036</a> <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>;
	724	<a name="l01037"></a>01037 <span class="keyword">public</span>:
	725	<a name="l01040"></a>01040
	726	<a name="l01041"></a>01041 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>() : <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( 0 ), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( true ), <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 4 ), <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 4 ) {
	727	<a name="l01042"></a>01042 <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> = -1;<span class="comment">/empty IDs/</span>
	728	<a name="l01043"></a>01043 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> = 0;
	729	<a name="l01044"></a>01044 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) = 1; <span class="comment">/log only mean/</span>
	730	<a name="l01045"></a>01045 };
	731	<a name="l01046"></a>01046 <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &B ) : <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ( B.<a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( B.<a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( B.<a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ) {}
	732	<a name="l01049"></a><a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">01049</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">_copy_</a>()<span class="keyword"> const </span>{
	733	<a name="l01050"></a>01050 <span class="keywordflow">return</span> NULL;
	734	<a name="l01051"></a>01051 };
752	735	<a name="l01053"></a>01053
753		<a name="l01054"></a>01054 }; <span class="comment">//namespace</span>
754		<a name="l01055"></a>01055 <span class="preprocessor">#endif // BDMBASE_H</span>
	736	<a name="l01056"></a>01056
	737	<a name="l01060"></a>01060 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> ( <span class="keyword">const</span> vec &dt ) = 0;
	738	<a name="l01062"></a>01062 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> ( <span class="keyword">const</span> mat &Dt );
	739	<a name="l01065"></a><a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">01065</a> <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( <span class="keyword">const</span> vec &dt )<span class="keyword"> const </span>{
	740	<a name="l01066"></a>01066 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> );
	741	<a name="l01067"></a>01067 <span class="keywordflow">return</span> 0.0;
	742	<a name="l01068"></a>01068 }
	743	<a name="l01069"></a>01069
	744	<a name="l01071"></a><a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae">01071</a> vec <a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> ( <span class="keyword">const</span> mat &dt )<span class="keyword"> const </span>{
	745	<a name="l01072"></a>01072 vec tmp ( dt.cols() );
	746	<a name="l01073"></a>01073 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i < dt.cols(); i++ ) {
	747	<a name="l01074"></a>01074 tmp ( i ) = <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( dt.get_col ( i ) );
	748	<a name="l01075"></a>01075 }
	749	<a name="l01076"></a>01076 <span class="keywordflow">return</span> tmp;
	750	<a name="l01077"></a>01077 }
	751	<a name="l01078"></a>01078
	752	<a name="l01080"></a><a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba">01080</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a>()<span class="keyword"> const </span>{
	753	<a name="l01081"></a>01081 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> );
	754	<a name="l01082"></a>01082 <span class="keywordflow">return</span> NULL;
	755	<a name="l01083"></a>01083 };
	756	<a name="l01085"></a><a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912">01085</a> <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where is random variable, rv, and...">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs conditional density of 1-step ahead predictor .">predictor</a>()<span class="keyword"> const </span>{
	757	<a name="l01086"></a>01086 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented"</span> );
	758	<a name="l01087"></a>01087 <span class="keywordflow">return</span> NULL;
	759	<a name="l01088"></a>01088 };
	760	<a name="l01090"></a>01090
	761	<a name="l01095"></a>01095
	762	<a name="l01097"></a><a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb">01097</a> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>;
	763	<a name="l01099"></a><a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33">01099</a> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& <a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{
	764	<a name="l01100"></a>01100 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>;
	765	<a name="l01101"></a>01101 }
	766	<a name="l01102"></a>01102
	767	<a name="l01104"></a><a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4">01104</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a> ( <span class="keyword">const</span> vec &val ) {
	768	<a name="l01105"></a>01105 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">"Not implemented!"</span> );
	769	<a name="l01106"></a>01106 }
	770	<a name="l01107"></a>01107
	771	<a name="l01109"></a>01109
	772	<a name="l01110"></a>01110
	773	<a name="l01113"></a>01113
	774	<a name="l01114"></a>01114 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>& _drv()<span class="keyword"> const </span>{
	775	<a name="l01115"></a>01115 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;
	776	<a name="l01116"></a>01116 }
	777	<a name="l01117"></a>01117 <span class="keywordtype">void</span> set_drv ( <span class="keyword">const</span> RV &rv ) {
	778	<a name="l01118"></a>01118 <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> = rv;
	779	<a name="l01119"></a>01119 }
	780	<a name="l01120"></a>01120 <span class="keywordtype">void</span> set_rv ( <span class="keyword">const</span> RV &rv ) {
	781	<a name="l01121"></a>01121 <span class="keyword">const_cast<</span>epdf&<span class="keyword">></span> ( posterior() ).set_rv ( rv );
	782	<a name="l01122"></a>01122 }
	783	<a name="l01123"></a>01123 <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{
	784	<a name="l01124"></a>01124 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;
	785	<a name="l01125"></a>01125 }
	786	<a name="l01126"></a>01126 <span class="keywordtype">void</span> set_evalll ( <span class="keywordtype">bool</span> evl0 ) {
	787	<a name="l01127"></a>01127 <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> = evl0;
	788	<a name="l01128"></a>01128 }
	789	<a name="l01129"></a>01129 <span class="keyword">virtual</span> <span class="keyword">const</span> epdf& posterior() <span class="keyword">const</span> = 0;
	790	<a name="l01131"></a>01131
	791	<a name="l01134"></a>01134
	792	<a name="l01136"></a><a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e">01136</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &quot;logbounds,logll&quot;.">set_options</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span> &opt ) {
	793	<a name="l01137"></a>01137 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) = 1;
	794	<a name="l01138"></a>01138 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">"logbounds"</span> ) != string::npos ) {
	795	<a name="l01139"></a>01139 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) = 1;
	796	<a name="l01140"></a>01140 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) = 1;
	797	<a name="l01141"></a>01141 }
	798	<a name="l01142"></a>01142 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">"logll"</span> ) != string::npos ) {
	799	<a name="l01143"></a>01143 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) = 1;
	800	<a name="l01144"></a>01144 }
	801	<a name="l01145"></a>01145 }
	802	<a name="l01147"></a><a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca">01147</a> ivec <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>;
	803	<a name="l01148"></a>01148
	804	<a name="l01150"></a><a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207">01150</a> ivec <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>;
	805	<a name="l01152"></a><a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827">01152</a> <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L, <span class="keyword">const</span> <span class="keywordtype">string</span> &name = <span class="stringliteral">""</span> ) {
	806	<a name="l01153"></a>01153 <span class="comment">// internal</span>
	807	<a name="l01154"></a>01154 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r;
	808	<a name="l01155"></a>01155 <span class="keywordflow">if</span> ( posterior().isnamed() ) {
	809	<a name="l01156"></a>01156 r = posterior().<a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();
	810	<a name="l01157"></a>01157 } <span class="keywordflow">else</span> {
	811	<a name="l01158"></a>01158 r = <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">"est"</span>, posterior().dimension() );
	812	<a name="l01159"></a>01159 };
	813	<a name="l01160"></a>01160
	814	<a name="l01161"></a>01161 <span class="comment">// Add mean value</span>
	815	<a name="l01162"></a>01162 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">"mean_"</span> );
	816	<a name="l01163"></a>01163 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">"lb_"</span> );
	817	<a name="l01164"></a>01164 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">"ub_"</span> );
	818	<a name="l01165"></a>01165 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">"ll"</span>, 1 ), name ); <span class="comment">//TODO: "local" RV</span>
	819	<a name="l01166"></a>01166 }
	820	<a name="l01167"></a>01167 <span class="keyword">virtual</span> <span class="keywordtype">void</span> logit ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &L ) {
	821	<a name="l01168"></a>01168 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ), posterior().mean() );
	822	<a name="l01169"></a>01169 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) \|\| <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) ) { <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span>
	823	<a name="l01170"></a>01170 vec ub, lb;
	824	<a name="l01171"></a>01171 posterior().<a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( lb, ub );
	825	<a name="l01172"></a>01172 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ), lb );
	826	<a name="l01173"></a>01173 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ), ub );
	827	<a name="l01174"></a>01174 }
	828	<a name="l01175"></a>01175 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) ) L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> );
	829	<a name="l01176"></a>01176 }
	830	<a name="l01178"></a><a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de">01178</a> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de" title="This method arrange instance properties according the data stored in the Setting...">from_setting</a> ( <span class="keyword">const</span> Setting &<span class="keyword">set</span> ) {
	831	<a name="l01179"></a>01179 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr<RV></a> r = UI::build<RV> ( <span class="keyword">set</span>, <span class="stringliteral">"drv"</span>, UI::optional );
	832	<a name="l01180"></a>01180 <span class="keywordflow">if</span> ( r ) {
	833	<a name="l01181"></a>01181 set_drv ( *r );
	834	<a name="l01182"></a>01182 }
	835	<a name="l01183"></a>01183 <span class="keywordtype">string</span> opt;
	836	<a name="l01184"></a>01184 <span class="keywordflow">if</span> ( !<a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a> ( opt, <span class="keyword">set</span>, <span class="stringliteral">"options"</span>, UI::optional ) ) {
	837	<a name="l01185"></a>01185 <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &quot;logbounds,logll&quot;.">set_options</a> ( opt );
	838	<a name="l01186"></a>01186 }
	839	<a name="l01187"></a>01187 }
	840	<a name="l01188"></a>01188
	841	<a name="l01189"></a>01189 };
	842	<a name="l01190"></a>01190
	843	<a name="l01191"></a>01191 <span class="keyword">typedef</span> Array<shared_ptr<epdf> > epdf_array;
	844	<a name="l01192"></a>01192
	845	<a name="l01193"></a>01193 <span class="keyword">typedef</span> Array<shared_ptr<mpdf> > mpdf_array;
	846	<a name="l01194"></a>01194
	847	<a name="l01195"></a>01195 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
	848	<a name="l01196"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930">01196</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">mpdf_internal<EPDF>::samplecond</a> ( <span class="keyword">const</span> vec &cond ) {
	849	<a name="l01197"></a>01197 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
	850	<a name="l01198"></a>01198 vec temp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample();
	851	<a name="l01199"></a>01199 <span class="keywordflow">return</span> temp;
	852	<a name="l01200"></a>01200 }
	853	<a name="l01201"></a>01201
	854	<a name="l01202"></a>01202 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
	855	<a name="l01203"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823">01203</a> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">mpdf_internal<EPDF>::samplecond_m</a> ( <span class="keyword">const</span> vec &cond, <span class="keywordtype">int</span> N ) {
	856	<a name="l01204"></a>01204 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
	857	<a name="l01205"></a>01205 mat temp ( dimension(), N );
	858	<a name="l01206"></a>01206 vec smp ( dimension() );
	859	<a name="l01207"></a>01207 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i < N; i++ ) {
	860	<a name="l01208"></a>01208 smp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample();
	861	<a name="l01209"></a>01209 temp.set_col ( i, smp );
	862	<a name="l01210"></a>01210 }
	863	<a name="l01211"></a>01211
	864	<a name="l01212"></a>01212 <span class="keywordflow">return</span> temp;
	865	<a name="l01213"></a>01213 }
	866	<a name="l01214"></a>01214
	867	<a name="l01215"></a>01215 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
	868	<a name="l01216"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948">01216</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">mpdf_internal<EPDF>::evallogcond</a> ( <span class="keyword">const</span> vec &dt, <span class="keyword">const</span> vec &cond ) {
	869	<a name="l01217"></a>01217 <span class="keywordtype">double</span> tmp;
	870	<a name="l01218"></a>01218 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
	871	<a name="l01219"></a>01219 tmp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog ( dt );
	872	<a name="l01220"></a>01220 <span class="keywordflow">return</span> tmp;
	873	<a name="l01221"></a>01221 }
	874	<a name="l01222"></a>01222
	875	<a name="l01223"></a>01223 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
	876	<a name="l01224"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c">01224</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal<EPDF>::evallogcond_m</a> ( <span class="keyword">const</span> mat &Dt, <span class="keyword">const</span> vec &cond ) {
	877	<a name="l01225"></a>01225 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
	878	<a name="l01226"></a>01226 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m ( Dt );
	879	<a name="l01227"></a>01227 }
	880	<a name="l01228"></a>01228
	881	<a name="l01229"></a>01229 <span class="keyword">template</span><<span class="keyword">class</span> EPDF>
	882	<a name="l01230"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae82db07ce8af02f29cfd81e014edb3db">01230</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal<EPDF>::evallogcond_m</a> ( <span class="keyword">const</span> Array<vec> &Dt, <span class="keyword">const</span> vec &cond ) {
	883	<a name="l01231"></a>01231 <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
	884	<a name="l01232"></a>01232 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m ( Dt );
	885	<a name="l01233"></a>01233 }
	886	<a name="l01234"></a>01234
	887	<a name="l01235"></a>01235 }; <span class="comment">//namespace</span>
	888	<a name="l01236"></a>01236 <span class="preprocessor">#endif // BDMBASE_H</span>
755	889	</pre></div></div>
756		<hr size="1"/><address style="text-align: right;"><small>Generated on ~~Sun Aug 30 22:10:49~~ 2009 for mixpp by
	890	<hr size="1"/><address style="text-align: right;"><small>Generated on Tue Sep 8 22:11:32 2009 for mixpp by
757	891	<a href="http://www.doxygen.org/index.html">
758	892	<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>

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