Changeset 614 for library/doc/html/bdmbase_8h_source.html

Timestamp:

09/13/09 23:14:58 (15 years ago)

Author:

smidl

Message:

doc

Files:

• library/doc/html/bdmbase_8h_source.html (modified) (1 diff)

library/doc/html/bdmbase_8h_source.html

@@ -167 +167 @@
 <a name="l00181"></a>00181                 <span class="keywordflow">return</span> NAMES ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( at ) );
 <a name="l00182"></a>00182         }
-<a name="l00183"></a>00183         <span class="keywordtype">void</span> set_time ( <span class="keywordtype">int</span> at, <span class="keywordtype">int</span> time0 ) {
-<a name="l00184"></a>00184                 <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( at ) = time0;
-<a name="l00185"></a>00185         }
-<a name="l00187"></a>00187 
-<a name="l00190"></a>00190 
-<a name="l00192"></a>00192         ivec <a class="code" href="classbdm_1_1RV.html#a1367055b2608ad9d50d01a2da6cec869" title="Find indices of self in another rv,.">findself</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 ) <span class="keyword">const</span>;
-<a name="l00194"></a>00194         ivec <a class="code" href="classbdm_1_1RV.html#aa858d36d0264e1f1c89500531162fdf1" title="Find indices of self in another rv, ignore time,.">findself_ids</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 ) <span class="keyword">const</span>;
-<a name="l00196"></a>00196         <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 ) <span class="keyword">const</span>;
-<a name="l00198"></a>00198         <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 );
-<a name="l00200"></a>00200         <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 ) <span class="keyword">const</span>;
-<a name="l00202"></a>00202         <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( <span class="keyword">const</span> ivec &amp;ind ) <span class="keyword">const</span>;
+<a name="l00184"></a><a class="code" href="classbdm_1_1RV.html#a9bae3443ded87dc9941d763e4c48cee0">00184</a>         std::string <a class="code" href="classbdm_1_1RV.html#a9bae3443ded87dc9941d763e4c48cee0" title="returns name of a scalar at position scalat, i.e. it can be in the middle of vector...">scalarname</a> ( <span class="keywordtype">int</span> scalat )<span class="keyword"> const </span>{
+<a name="l00185"></a>00185                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a>(scalat&lt;<a class="code" href="classbdm_1_1RV.html#a0cfe477965243a89eb87a06b024e2fcb" title="size of the data vector">dsize</a>,<span class="stringliteral">&quot;Wrong input index&quot;</span>);
+<a name="l00186"></a>00186                 <span class="keywordtype">int</span> <span class="keywordtype">id</span>=0;
+<a name="l00187"></a>00187                 <span class="keywordtype">int</span> scalid=0;
+<a name="l00188"></a>00188                 <span class="keywordflow">while</span> (scalid+SIZES(<a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(<span class="keywordtype">id</span>))&lt;=scalat)  { scalid+=SIZES(<a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a>(<span class="keywordtype">id</span>)); <span class="keywordtype">id</span>++;};
+<a name="l00189"></a>00189                 <span class="comment">//now id is the id of variable of interest</span>
+<a name="l00190"></a>00190                 <span class="keywordflow">if</span> (size(<span class="keywordtype">id</span>)==1)
+<a name="l00191"></a>00191                         <span class="keywordflow">return</span>  NAMES ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( <span class="keywordtype">id</span> ) );
+<a name="l00192"></a>00192                 <span class="keywordflow">else</span>
+<a name="l00193"></a>00193                         <span class="keywordflow">return</span>  NAMES ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ( <span class="keywordtype">id</span> ) )+ <span class="stringliteral">&quot;_&quot;</span> + num2str(scalat-scalid);
+<a name="l00194"></a>00194 
+<a name="l00195"></a>00195         }
+<a name="l00196"></a>00196         <span class="keywordtype">void</span> set_time ( <span class="keywordtype">int</span> at, <span class="keywordtype">int</span> time0 ) {
+<a name="l00197"></a>00197                 <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a> ( at ) = time0;
+<a name="l00198"></a>00198         }
+<a name="l00200"></a>00200 
 <a name="l00203"></a>00203 
-<a name="l00205"></a><a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966">00205</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>( <span class="keyword">const</span> ivec &amp;ind )<span class="keyword"> const </span>{
-<a name="l00206"></a>00206                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( ind );
-<a name="l00207"></a>00207         }
-<a name="l00208"></a>00208 
-<a name="l00210"></a>00210         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>( <span class="keywordtype">int</span> di1, <span class="keywordtype">int</span> di2 ) <span class="keyword">const</span>;
-<a name="l00211"></a>00211 
-<a name="l00213"></a>00213         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a> ( <span class="keywordtype">int</span> delta );
-<a name="l00215"></a>00215 
-<a name="l00218"></a>00218         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> remove_time()<span class="keyword"> const </span>{
-<a name="l00219"></a>00219                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> ( unique ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ), dummy );
+<a name="l00205"></a>00205         ivec <a class="code" href="classbdm_1_1RV.html#a1367055b2608ad9d50d01a2da6cec869" title="Find indices of self in another rv,.">findself</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 ) <span class="keyword">const</span>;
+<a name="l00207"></a>00207         ivec <a class="code" href="classbdm_1_1RV.html#aa858d36d0264e1f1c89500531162fdf1" title="Find indices of self in another rv, ignore time,.">findself_ids</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 ) <span class="keyword">const</span>;
+<a name="l00209"></a>00209         <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a3bb011af88ae98f5c97955bb2c95cfee" title="Compare if rv2 is identical to this RV.">equal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 ) <span class="keyword">const</span>;
+<a name="l00211"></a>00211         <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1RV.html#a87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 );
+<a name="l00213"></a>00213         <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> &amp;rv2 ) <span class="keyword">const</span>;
+<a name="l00215"></a>00215         <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( <span class="keyword">const</span> ivec &amp;ind ) <span class="keyword">const</span>;
+<a name="l00216"></a>00216 
+<a name="l00218"></a><a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966">00218</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>( <span class="keyword">const</span> ivec &amp;ind )<span class="keyword"> const </span>{
+<a name="l00219"></a>00219                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( ind );
 <a name="l00220"></a>00220         }
-<a name="l00222"></a><a class="code" href="classbdm_1_1RV.html#a627222f49abc5d07e5e8aecac7708ee2">00222</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a627222f49abc5d07e5e8aecac7708ee2" title="create new RV from the current one with time shifted by given value">copy_t</a>(<span class="keywordtype">int</span> dt)<span class="keyword"> const </span>{
-<a name="l00223"></a>00223                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> tmp=*<span class="keyword">this</span>;
-<a name="l00224"></a>00224                 tmp.<a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a>(dt);
-<a name="l00225"></a>00225                 <span class="keywordflow">return</span> tmp;
-<a name="l00226"></a>00226         }
-<a name="l00228"></a><a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e">00228</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e" title="return rvs with expanded delayes and sorted in the order of:">expand_delayes</a>()<span class="keyword"> const </span>{
-<a name="l00229"></a>00229                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rvt = this-&gt;remove_time(); <span class="comment">//rv at t=0</span>
-<a name="l00230"></a>00230                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> tmp = rvt;
-<a name="l00231"></a>00231                 <span class="keywordtype">int</span> td = <a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>();
-<a name="l00232"></a>00232                 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = -1; i &gt;= td; i-- ) {
-<a name="l00233"></a>00233                         rvt.<a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a> ( -1 );
-<a name="l00234"></a>00234                         tmp.<a class="code" href="classbdm_1_1RV.html#a87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a> ( rvt ); <span class="comment">//shift u1</span>
-<a name="l00235"></a>00235                 }
-<a name="l00236"></a>00236                 <span class="keywordflow">return</span> tmp;
-<a name="l00237"></a>00237         }
-<a name="l00239"></a>00239 
-<a name="l00242"></a>00242 
-<a name="l00244"></a>00244         <a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> <a class="code" href="classbdm_1_1RV.html#a8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes">tostr</a>() <span class="keyword">const</span>;
-<a name="l00247"></a>00247         ivec <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;crv ) <span class="keyword">const</span>;
-<a name="l00249"></a>00249         ivec <a class="code" href="classbdm_1_1RV.html#a0c6e3a1c54a612d2ea390c841aa5eb6f" title="same as dataind but this time crv should not be complete supperset of rv.">dataind_part</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;crv ) <span class="keyword">const</span>;
-<a name="l00252"></a>00252         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2, ivec &amp;selfi, ivec &amp;rv2i ) <span class="keyword">const</span>;
-<a name="l00254"></a><a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241">00254</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>()<span class="keyword"> const </span>{
-<a name="l00255"></a>00255                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>.length()&gt;0 ? min (<a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>) : 0;
-<a name="l00256"></a>00256         }
-<a name="l00258"></a>00258 
-<a name="l00273"></a>00273         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#a6564bdd36b6845a51446a192d33e1194" title="UI for class RV (description of data vectors).">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> );
-<a name="l00274"></a>00274 
-<a name="l00275"></a>00275         <span class="comment">// TODO dodelat void to_setting( Setting &amp;set ) const;</span>
-<a name="l00276"></a>00276 
-<a name="l00278"></a>00278         <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#aab92b361335a644df654cf7cf7e5ffc0" title="Invalidate all named RVs. Use before initializing any RV instances, with care...">clear_all</a>();
-<a name="l00280"></a>00280         <span class="keywordtype">string</span> <a class="code" href="classbdm_1_1RV.html#a0743ab524c18d0c6553b29b043fd42bd" title="function for debugging RV related stuff">show_all</a>();
-<a name="l00281"></a>00281 
-<a name="l00282"></a>00282 };
-<a name="l00283"></a>00283 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( RV );
-<a name="l00284"></a>00284 SHAREDPTR ( RV );
-<a name="l00285"></a>00285 
-<a name="l00287"></a>00287 RV concat ( <span class="keyword">const</span> RV &amp;rv1, <span class="keyword">const</span> RV &amp;rv2 );
-<a name="l00288"></a>00288 
-<a name="l00290"></a><a class="code" href="classbdm_1_1fnc.html">00290</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1fnc.html" title="Class representing function  of variable  represented by rv.">fnc</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
-<a name="l00291"></a>00291 <span class="keyword">protected</span>:
-<a name="l00293"></a><a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62">00293</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;
-<a name="l00294"></a>00294 <span class="keyword">public</span>:
-<a name="l00296"></a><a class="code" href="classbdm_1_1fnc.html#a65e9fb11f6cc7884018d8f229bcabbb7">00296</a>         <a class="code" href="classbdm_1_1fnc.html#a65e9fb11f6cc7884018d8f229bcabbb7" title="default constructor">fnc</a>() {};
-<a name="l00298"></a><a class="code" href="classbdm_1_1fnc.html#a6277b11d7fffc7ef8a2fa3e84ae5bad4">00298</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1fnc.html#a6277b11d7fffc7ef8a2fa3e84ae5bad4" title="function evaluates numerical value of  at  cond ">eval</a> ( <span class="keyword">const</span> vec &amp;cond ) {
-<a name="l00299"></a>00299                 <span class="keywordflow">return</span> vec ( 0 );
-<a name="l00300"></a>00300         };
+<a name="l00221"></a>00221 
+<a name="l00223"></a>00223         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a6f3daf0f857fff53a1c0a445fe160966" title="Select only variables at indices ind.">operator() </a>( <span class="keywordtype">int</span> di1, <span class="keywordtype">int</span> di2 ) <span class="keyword">const</span>;
+<a name="l00224"></a>00224 
+<a name="l00226"></a>00226         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a> ( <span class="keywordtype">int</span> delta );
+<a name="l00228"></a>00228 
+<a name="l00231"></a>00231         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> remove_time()<span class="keyword"> const </span>{
+<a name="l00232"></a>00232                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#ae319ca900261a5005a9b4b353ec16412" title="Constructor of empty RV.">RV</a> ( unique ( <a class="code" href="classbdm_1_1RV.html#a0a9a4769ab5a322495bea0cd8091500b" title="Vector of unique IDs.">ids</a> ), dummy );
+<a name="l00233"></a>00233         }
+<a name="l00235"></a><a class="code" href="classbdm_1_1RV.html#a627222f49abc5d07e5e8aecac7708ee2">00235</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#a627222f49abc5d07e5e8aecac7708ee2" title="create new RV from the current one with time shifted by given value">copy_t</a>(<span class="keywordtype">int</span> dt)<span class="keyword"> const </span>{
+<a name="l00236"></a>00236                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> tmp=*<span class="keyword">this</span>;
+<a name="l00237"></a>00237                 tmp.<a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a>(dt);
+<a name="l00238"></a>00238                 <span class="keywordflow">return</span> tmp;
+<a name="l00239"></a>00239         }
+<a name="l00241"></a><a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e">00241</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e" title="return rvs with expanded delayes and sorted in the order of:">expand_delayes</a>()<span class="keyword"> const </span>{
+<a name="l00242"></a>00242                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rvt = this-&gt;remove_time(); <span class="comment">//rv at t=0</span>
+<a name="l00243"></a>00243                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> tmp = rvt;
+<a name="l00244"></a>00244                 <span class="keywordtype">int</span> td = <a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>();
+<a name="l00245"></a>00245                 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = -1; i &gt;= td; i-- ) {
+<a name="l00246"></a>00246                         rvt.<a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a> ( -1 );
+<a name="l00247"></a>00247                         tmp.<a class="code" href="classbdm_1_1RV.html#a87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a> ( rvt ); <span class="comment">//shift u1</span>
+<a name="l00248"></a>00248                 }
+<a name="l00249"></a>00249                 <span class="keywordflow">return</span> tmp;
+<a name="l00250"></a>00250         }
+<a name="l00252"></a>00252 
+<a name="l00255"></a>00255 
+<a name="l00257"></a>00257         <a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> <a class="code" href="classbdm_1_1RV.html#a8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes">tostr</a>() <span class="keyword">const</span>;
+<a name="l00260"></a>00260         ivec <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;crv ) <span class="keyword">const</span>;
+<a name="l00262"></a>00262         ivec <a class="code" href="classbdm_1_1RV.html#a0c6e3a1c54a612d2ea390c841aa5eb6f" title="same as dataind but this time crv should not be complete supperset of rv.">dataind_part</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;crv ) <span class="keyword">const</span>;
+<a name="l00265"></a>00265         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2, ivec &amp;selfi, ivec &amp;rv2i ) <span class="keyword">const</span>;
+<a name="l00267"></a><a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241">00267</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>()<span class="keyword"> const </span>{
+<a name="l00268"></a>00268                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>.length()&gt;0 ? min (<a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>) : 0;
+<a name="l00269"></a>00269         }
+<a name="l00271"></a>00271 
+<a name="l00286"></a>00286         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#a6564bdd36b6845a51446a192d33e1194" title="UI for class RV (description of data vectors).">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> );
+<a name="l00287"></a>00287 
+<a name="l00288"></a>00288         <span class="comment">// TODO dodelat void to_setting( Setting &amp;set ) const;</span>
+<a name="l00289"></a>00289 
+<a name="l00291"></a>00291         <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#aab92b361335a644df654cf7cf7e5ffc0" title="Invalidate all named RVs. Use before initializing any RV instances, with care...">clear_all</a>();
+<a name="l00293"></a>00293         <span class="keywordtype">string</span> <a class="code" href="classbdm_1_1RV.html#a0743ab524c18d0c6553b29b043fd42bd" title="function for debugging RV related stuff">show_all</a>();
+<a name="l00294"></a>00294 
+<a name="l00295"></a>00295 };
+<a name="l00296"></a>00296 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( RV );
+<a name="l00297"></a>00297 SHAREDPTR ( RV );
+<a name="l00298"></a>00298 
+<a name="l00300"></a>00300 RV concat ( <span class="keyword">const</span> RV &amp;rv1, <span class="keyword">const</span> RV &amp;rv2 );
 <a name="l00301"></a>00301 
-<a name="l00303"></a><a class="code" href="classbdm_1_1fnc.html#a0786e40fade2663a70d654c1dda5d73e">00303</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1fnc.html#a0786e40fade2663a70d654c1dda5d73e" title="function substitutes given value into an appropriate position">condition</a> ( <span class="keyword">const</span> vec &amp;val ) {};
-<a name="l00304"></a>00304 
-<a name="l00306"></a><a class="code" href="classbdm_1_1fnc.html#a083832294da9d1e40804158b979c4341">00306</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a083832294da9d1e40804158b979c4341" title="access function">dimension</a>()<span class="keyword"> const </span>{
-<a name="l00307"></a>00307                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;
-<a name="l00308"></a>00308         }
-<a name="l00309"></a>00309 };
-<a name="l00310"></a>00310 
-<a name="l00311"></a>00311 <span class="keyword">class </span>mpdf;
-<a name="l00312"></a>00312 
+<a name="l00303"></a><a class="code" href="classbdm_1_1fnc.html">00303</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1fnc.html" title="Class representing function  of variable  represented by rv.">fnc</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
+<a name="l00304"></a>00304 <span class="keyword">protected</span>:
+<a name="l00306"></a><a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62">00306</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;
+<a name="l00307"></a>00307 <span class="keyword">public</span>:
+<a name="l00309"></a><a class="code" href="classbdm_1_1fnc.html#a65e9fb11f6cc7884018d8f229bcabbb7">00309</a>         <a class="code" href="classbdm_1_1fnc.html#a65e9fb11f6cc7884018d8f229bcabbb7" title="default constructor">fnc</a>() {};
+<a name="l00311"></a><a class="code" href="classbdm_1_1fnc.html#a6277b11d7fffc7ef8a2fa3e84ae5bad4">00311</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1fnc.html#a6277b11d7fffc7ef8a2fa3e84ae5bad4" title="function evaluates numerical value of  at  cond ">eval</a> ( <span class="keyword">const</span> vec &amp;cond ) {
+<a name="l00312"></a>00312                 <span class="keywordflow">return</span> vec ( 0 );
+<a name="l00313"></a>00313         };
 <a name="l00314"></a>00314 
-<a name="l00315"></a><a class="code" href="classbdm_1_1epdf.html">00315</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
-<a name="l00316"></a>00316 <span class="keyword">protected</span>:
-<a name="l00318"></a><a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce">00318</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;
-<a name="l00320"></a><a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8">00320</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;
-<a name="l00321"></a>00321 
-<a name="l00322"></a>00322 <span class="keyword">public</span>:
-<a name="l00334"></a>00334         <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>() : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( 0 ), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>() {};
-<a name="l00335"></a>00335         <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &amp;e ) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( e.<a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ( e.<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) {};
-<a name="l00336"></a>00336         epdf ( <span class="keyword">const</span> RV &amp;rv0 ) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( rv0._dsize() ) {
-<a name="l00337"></a>00337                 <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( rv0 );
-<a name="l00338"></a>00338         };
-<a name="l00339"></a>00339         <span class="keywordtype">void</span> set_parameters ( <span class="keywordtype">int</span> dim0 ) {
-<a name="l00340"></a>00340                 <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> = dim0;
-<a name="l00341"></a>00341         }
-<a name="l00343"></a>00343 
-<a name="l00346"></a>00346 
-<a name="l00348"></a><a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b">00348</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample,  from density .">sample</a>()<span class="keyword"> const </span>{
-<a name="l00349"></a>00349                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;not implemented&quot;</span> );
-<a name="l00350"></a>00350                 <span class="keywordflow">return</span> vec();
-<a name="l00351"></a>00351         }
-<a name="l00352"></a>00352 
-<a name="l00354"></a>00354         <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#ab4cf45fd83cc7573ede9fe1215256058" title="Returns N samples,  from density .">sample_m</a> ( <span class="keywordtype">int</span> N ) <span class="keyword">const</span>;
-<a name="l00355"></a>00355 
-<a name="l00358"></a><a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">00358</a>         <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val In case the argument is out of suport return...">evallog</a> ( <span class="keyword">const</span> vec &amp;val )<span class="keyword"> const </span>{
-<a name="l00359"></a>00359                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;not implemented&quot;</span> );
-<a name="l00360"></a>00360                 <span class="keywordflow">return</span> 0.0;
-<a name="l00361"></a>00361         }
-<a name="l00362"></a>00362 
-<a name="l00364"></a>00364         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( <span class="keyword">const</span> mat &amp;Val ) <span class="keyword">const</span>;
+<a name="l00316"></a><a class="code" href="classbdm_1_1fnc.html#a0786e40fade2663a70d654c1dda5d73e">00316</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1fnc.html#a0786e40fade2663a70d654c1dda5d73e" title="function substitutes given value into an appropriate position">condition</a> ( <span class="keyword">const</span> vec &amp;val ) {};
+<a name="l00317"></a>00317 
+<a name="l00319"></a><a class="code" href="classbdm_1_1fnc.html#a083832294da9d1e40804158b979c4341">00319</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1fnc.html#a083832294da9d1e40804158b979c4341" title="access function">dimension</a>()<span class="keyword"> const </span>{
+<a name="l00320"></a>00320                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1fnc.html#a52156cb4a52a62d51fc7455985797a62" title="Length of the output vector.">dimy</a>;
+<a name="l00321"></a>00321         }
+<a name="l00322"></a>00322 };
+<a name="l00323"></a>00323 
+<a name="l00324"></a>00324 <span class="keyword">class </span>mpdf;
+<a name="l00325"></a>00325 
+<a name="l00327"></a>00327 
+<a name="l00328"></a><a class="code" href="classbdm_1_1epdf.html">00328</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
+<a name="l00329"></a>00329 <span class="keyword">protected</span>:
+<a name="l00331"></a><a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce">00331</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;
+<a name="l00333"></a><a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8">00333</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;
+<a name="l00334"></a>00334 
+<a name="l00335"></a>00335 <span class="keyword">public</span>:
+<a name="l00347"></a>00347         <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>() : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( 0 ), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>() {};
+<a name="l00348"></a>00348         <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &amp;e ) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( e.<a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ), <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ( e.<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) {};
+<a name="l00349"></a>00349         epdf ( <span class="keyword">const</span> RV &amp;rv0 ) : <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> ( rv0._dsize() ) {
+<a name="l00350"></a>00350                 <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( rv0 );
+<a name="l00351"></a>00351         };
+<a name="l00352"></a>00352         <span class="keywordtype">void</span> set_parameters ( <span class="keywordtype">int</span> dim0 ) {
+<a name="l00353"></a>00353                 <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> = dim0;
+<a name="l00354"></a>00354         }
+<a name="l00356"></a>00356 
+<a name="l00359"></a>00359 
+<a name="l00361"></a><a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b">00361</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a75ba57a89681a8efec488f5796c7cc1b" title="Returns a sample,  from density .">sample</a>()<span class="keyword"> const </span>{
+<a name="l00362"></a>00362                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;not implemented&quot;</span> );
+<a name="l00363"></a>00363                 <span class="keywordflow">return</span> vec();
+<a name="l00364"></a>00364         }
 <a name="l00365"></a>00365 
-<a name="l00367"></a>00367         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( <span class="keyword">const</span> Array&lt;vec&gt; &amp;Avec ) <span class="keyword">const</span>;
+<a name="l00367"></a>00367         <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#ab4cf45fd83cc7573ede9fe1215256058" title="Returns N samples,  from density .">sample_m</a> ( <span class="keywordtype">int</span> N ) <span class="keyword">const</span>;
 <a name="l00368"></a>00368 
-<a name="l00370"></a>00370         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;mpdf&gt;</a> <a class="code" href="classbdm_1_1epdf.html#a1499d35b79bce0cfa64fc5cafb9c03b2" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) <span class="keyword">const</span>;
-<a name="l00371"></a>00371 
-<a name="l00373"></a>00373         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> <a class="code" href="classbdm_1_1epdf.html#aa84b05f5293cab2aeb4e07faffa60906" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) <span class="keyword">const</span>;
-<a name="l00374"></a>00374 
-<a name="l00376"></a><a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75">00376</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>()<span class="keyword"> const </span>{
-<a name="l00377"></a>00377                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;not implemneted&quot;</span> );
-<a name="l00378"></a>00378                 <span class="keywordflow">return</span> vec();
-<a name="l00379"></a>00379         }
-<a name="l00380"></a>00380 
-<a name="l00382"></a><a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c">00382</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()<span class="keyword"> const </span>{
-<a name="l00383"></a>00383                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;not implemneted&quot;</span> );
-<a name="l00384"></a>00384                 <span class="keywordflow">return</span> vec();
-<a name="l00385"></a>00385         }
-<a name="l00386"></a>00386 
-<a name="l00388"></a><a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539">00388</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( vec &amp;lb, vec &amp;ub, <span class="keywordtype">double</span> percentage = 0.95 )<span class="keyword"> const </span>{
-<a name="l00389"></a>00389                 vec mea = <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>();
-<a name="l00390"></a>00390                 vec std = sqrt ( <a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>() );
-<a name="l00391"></a>00391                 lb = mea - 2 * std;
-<a name="l00392"></a>00392                 ub = mea + 2 * std;
-<a name="l00393"></a>00393         };
-<a name="l00395"></a>00395 
-<a name="l00401"></a>00401 
-<a name="l00403"></a><a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff">00403</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv0 ) {
-<a name="l00404"></a>00404                 <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> = rv0;
-<a name="l00405"></a>00405         }
-<a name="l00406"></a>00406 
-<a name="l00408"></a><a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9">00408</a>         <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>()<span class="keyword"> const </span>{
-<a name="l00409"></a>00409                 <span class="keywordtype">bool</span> b = ( <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> == <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
-<a name="l00410"></a>00410                 <span class="keywordflow">return</span> b;
-<a name="l00411"></a>00411         }
-<a name="l00412"></a>00412 
-<a name="l00414"></a><a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21">00414</a>         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>()<span class="keyword"> const </span>{
-<a name="l00415"></a>00415                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>(), <span class="stringliteral">&quot;&quot;</span> );
-<a name="l00416"></a>00416                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;
-<a name="l00417"></a>00417         }
+<a name="l00371"></a><a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">00371</a>         <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val In case the argument is out of suport return...">evallog</a> ( <span class="keyword">const</span> vec &amp;val )<span class="keyword"> const </span>{
+<a name="l00372"></a>00372                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;not implemented&quot;</span> );
+<a name="l00373"></a>00373                 <span class="keywordflow">return</span> 0.0;
+<a name="l00374"></a>00374         }
+<a name="l00375"></a>00375 
+<a name="l00377"></a>00377         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( <span class="keyword">const</span> mat &amp;Val ) <span class="keyword">const</span>;
+<a name="l00378"></a>00378 
+<a name="l00380"></a>00380         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#ad08b68a5abd461f1b6519597e344caf8" title="Compute log-probability of multiple values argument val.">evallog_m</a> ( <span class="keyword">const</span> Array&lt;vec&gt; &amp;Avec ) <span class="keyword">const</span>;
+<a name="l00381"></a>00381 
+<a name="l00383"></a>00383         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;mpdf&gt;</a> <a class="code" href="classbdm_1_1epdf.html#a1499d35b79bce0cfa64fc5cafb9c03b2" title="Return conditional density on the given RV, the remaining rvs will be in conditioning...">condition</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) <span class="keyword">const</span>;
+<a name="l00384"></a>00384 
+<a name="l00386"></a>00386         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> <a class="code" href="classbdm_1_1epdf.html#aa84b05f5293cab2aeb4e07faffa60906" title="Return marginal density on the given RV, the remainig rvs are intergrated out.">marginal</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;<a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> ) <span class="keyword">const</span>;
+<a name="l00387"></a>00387 
+<a name="l00389"></a><a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75">00389</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>()<span class="keyword"> const </span>{
+<a name="l00390"></a>00390                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;not implemneted&quot;</span> );
+<a name="l00391"></a>00391                 <span class="keywordflow">return</span> vec();
+<a name="l00392"></a>00392         }
+<a name="l00393"></a>00393 
+<a name="l00395"></a><a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c">00395</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>()<span class="keyword"> const </span>{
+<a name="l00396"></a>00396                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;not implemneted&quot;</span> );
+<a name="l00397"></a>00397                 <span class="keywordflow">return</span> vec();
+<a name="l00398"></a>00398         }
+<a name="l00399"></a>00399 
+<a name="l00401"></a><a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539">00401</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( vec &amp;lb, vec &amp;ub, <span class="keywordtype">double</span> percentage = 0.95 )<span class="keyword"> const </span>{
+<a name="l00402"></a>00402                 vec mea = <a class="code" href="classbdm_1_1epdf.html#a0c8d13d788094605b3cdab20a6e22b75" title="return expected value">mean</a>();
+<a name="l00403"></a>00403                 vec std = sqrt ( <a class="code" href="classbdm_1_1epdf.html#a4543d40ccfc5d549b0c831a57a3ed84c" title="return expected variance (not covariance!)">variance</a>() );
+<a name="l00404"></a>00404                 lb = mea - 2 * std;
+<a name="l00405"></a>00405                 ub = mea + 2 * std;
+<a name="l00406"></a>00406         };
+<a name="l00408"></a>00408 
+<a name="l00414"></a>00414 
+<a name="l00416"></a><a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff">00416</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv0 ) {
+<a name="l00417"></a>00417                 <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a> = rv0;
+<a name="l00418"></a>00418         }
 <a name="l00419"></a>00419 
-<a name="l00422"></a>00422 
-<a name="l00424"></a><a class="code" href="classbdm_1_1epdf.html#a7083a65f7b7a0d0d13b2c516bd2ec29c">00424</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>()<span class="keyword"> const </span>{
-<a name="l00425"></a>00425                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;
-<a name="l00426"></a>00426         }
-<a name="l00434"></a><a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725">00434</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ) {
-<a name="l00435"></a>00435                 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr&lt;RV&gt;</a> r = UI::build&lt;RV&gt; ( <span class="keyword">set</span>, <span class="stringliteral">&quot;rv&quot;</span>, UI::optional );
-<a name="l00436"></a>00436                 <span class="keywordflow">if</span> ( r ) {
-<a name="l00437"></a>00437                         <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( *r );
-<a name="l00438"></a>00438                 }
+<a name="l00421"></a><a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9">00421</a>         <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>()<span class="keyword"> const </span>{
+<a name="l00422"></a>00422                 <span class="keywordtype">bool</span> b = ( <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a> == <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
+<a name="l00423"></a>00423                 <span class="keywordflow">return</span> b;
+<a name="l00424"></a>00424         }
+<a name="l00425"></a>00425 
+<a name="l00427"></a><a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21">00427</a>         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>()<span class="keyword"> const </span>{
+<a name="l00428"></a>00428                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1epdf.html#ac4b863ff84c7a4882fb3ad18556027f9" title="True if rv is assigned.">isnamed</a>(), <span class="stringliteral">&quot;&quot;</span> );
+<a name="l00429"></a>00429                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a62c5b8ff71d9ebe6cd58d3c342eb1dc8" title="Description of the random variable.">rv</a>;
+<a name="l00430"></a>00430         }
+<a name="l00432"></a>00432 
+<a name="l00435"></a>00435 
+<a name="l00437"></a><a class="code" href="classbdm_1_1epdf.html#a7083a65f7b7a0d0d13b2c516bd2ec29c">00437</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1epdf.html#a7083a65f7b7a0d0d13b2c516bd2ec29c" title="Size of the random variable.">dimension</a>()<span class="keyword"> const </span>{
+<a name="l00438"></a>00438                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>;
 <a name="l00439"></a>00439         }
-<a name="l00440"></a>00440 
-<a name="l00441"></a>00441 };
-<a name="l00442"></a>00442 SHAREDPTR ( epdf );
-<a name="l00443"></a>00443 
-<a name="l00445"></a><a class="code" href="classbdm_1_1mpdf.html">00445</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
-<a name="l00446"></a>00446 <span class="keyword">protected</span>:
-<a name="l00448"></a><a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6">00448</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;
-<a name="l00450"></a><a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288">00450</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;
-<a name="l00451"></a>00451 <span class="keyword">private</span>:
-<a name="l00453"></a>00453         <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* ep;
-<a name="l00454"></a>00454 
-<a name="l00455"></a>00455 <span class="keyword">protected</span>:
-<a name="l00457"></a><a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e">00457</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &amp;iepdf ) {
-<a name="l00458"></a>00458                 ep = &amp;iepdf;
-<a name="l00459"></a>00459         }
-<a name="l00461"></a><a class="code" href="classbdm_1_1mpdf.html#a7555b377f8b5895c9b759c9628ee3e20">00461</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a7555b377f8b5895c9b759c9628ee3e20" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> *iepdfp ) {
-<a name="l00462"></a>00462                 ep = iepdfp;
-<a name="l00463"></a>00463         }
-<a name="l00464"></a>00464 
-<a name="l00465"></a>00465 <span class="keyword">public</span>:
-<a name="l00468"></a>00468 
-<a name="l00469"></a>00469         <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>() : <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ( 0 ), <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>(), ep ( NULL ) { }
-<a name="l00470"></a>00470 
-<a name="l00471"></a>00471         mpdf ( <span class="keyword">const</span> mpdf &amp;m ) : <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ( m.<a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ), <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ( m.<a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ), ep ( m.ep ) { }
-<a name="l00473"></a>00473 
-<a name="l00476"></a>00476 
-<a name="l00478"></a><a class="code" href="classbdm_1_1mpdf.html#af0c1db6fcbb3aae2dd6123884457a367">00478</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#af0c1db6fcbb3aae2dd6123884457a367" title="Returns a sample from the density conditioned on cond, .">samplecond</a> ( <span class="keyword">const</span> vec &amp;cond ) {
-<a name="l00479"></a>00479                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
-<a name="l00480"></a>00480                 <span class="keywordflow">return</span> vec();
-<a name="l00481"></a>00481         }
-<a name="l00482"></a>00482 
-<a name="l00484"></a>00484         <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf.html#a6e497d501331057309d2fddf63259d1a" title="Returns.">samplecond_m</a> ( <span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N );
-<a name="l00485"></a>00485 
-<a name="l00487"></a><a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b">00487</a>         <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;cond ) {
-<a name="l00488"></a>00488                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
-<a name="l00489"></a>00489                 <span class="keywordflow">return</span> 0.0;
-<a name="l00490"></a>00490         }
-<a name="l00491"></a>00491 
-<a name="l00493"></a><a class="code" href="classbdm_1_1mpdf.html#a0b0ed1ed663071bb7cf4a1349eb94fcb">00493</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#a0b0ed1ed663071bb7cf4a1349eb94fcb" title="Matrix version of evallogcond.">evallogcond_m</a> ( <span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) {
-<a name="l00494"></a>00494                 vec v ( Dt.cols() );
-<a name="l00495"></a>00495                 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i &lt; Dt.cols(); i++ ) {
-<a name="l00496"></a>00496                         v ( i ) = <a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( Dt.get_col ( i ), cond );
-<a name="l00497"></a>00497                 }
-<a name="l00498"></a>00498                 <span class="keywordflow">return</span> v;
-<a name="l00499"></a>00499         }
-<a name="l00500"></a>00500 
-<a name="l00502"></a><a class="code" href="classbdm_1_1mpdf.html#a2a0d03756f59924fd038980ee60bd904">00502</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#a2a0d03756f59924fd038980ee60bd904" title="Array&amp;lt;vec&amp;gt; version of evallogcond.">evallogcond_m</a> ( <span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) {
-<a name="l00503"></a>00503                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
-<a name="l00504"></a>00504                 <span class="keywordflow">return</span> vec();
-<a name="l00505"></a>00505         }
-<a name="l00506"></a>00506 
-<a name="l00509"></a>00509 
-<a name="l00510"></a>00510         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; _rv()<span class="keyword"> const </span>{
-<a name="l00511"></a>00511                 <span class="keywordflow">return</span> ep-&gt;<a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();
+<a name="l00447"></a><a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725">00447</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ) {
+<a name="l00448"></a>00448                 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr&lt;RV&gt;</a> r = UI::build&lt;RV&gt; ( <span class="keyword">set</span>, <span class="stringliteral">&quot;rv&quot;</span>, UI::optional );
+<a name="l00449"></a>00449                 <span class="keywordflow">if</span> ( r ) {
+<a name="l00450"></a>00450                         <a class="code" href="classbdm_1_1epdf.html#af423e28448dbb69ef4905295ec8de8ff" title="Name its rv.">set_rv</a> ( *r );
+<a name="l00451"></a>00451                 }
+<a name="l00452"></a>00452         }
+<a name="l00453"></a>00453 
+<a name="l00454"></a>00454 };
+<a name="l00455"></a>00455 SHAREDPTR ( epdf );
+<a name="l00456"></a>00456 
+<a name="l00458"></a><a class="code" href="classbdm_1_1mpdf.html">00458</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
+<a name="l00459"></a>00459 <span class="keyword">protected</span>:
+<a name="l00461"></a><a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6">00461</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;
+<a name="l00463"></a><a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288">00463</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;
+<a name="l00464"></a>00464 <span class="keyword">private</span>:
+<a name="l00466"></a>00466         <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* ep;
+<a name="l00467"></a>00467 
+<a name="l00468"></a>00468 <span class="keyword">protected</span>:
+<a name="l00470"></a><a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e">00470</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> &amp;iepdf ) {
+<a name="l00471"></a>00471                 ep = &amp;iepdf;
+<a name="l00472"></a>00472         }
+<a name="l00474"></a><a class="code" href="classbdm_1_1mpdf.html#a7555b377f8b5895c9b759c9628ee3e20">00474</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a7555b377f8b5895c9b759c9628ee3e20" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> *iepdfp ) {
+<a name="l00475"></a>00475                 ep = iepdfp;
+<a name="l00476"></a>00476         }
+<a name="l00477"></a>00477 
+<a name="l00478"></a>00478 <span class="keyword">public</span>:
+<a name="l00481"></a>00481 
+<a name="l00482"></a>00482         <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>() : <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ( 0 ), <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>(), ep ( NULL ) { }
+<a name="l00483"></a>00483 
+<a name="l00484"></a>00484         mpdf ( <span class="keyword">const</span> mpdf &amp;m ) : <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ( m.<a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> ), <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ( m.<a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> ), ep ( m.ep ) { }
+<a name="l00486"></a>00486 
+<a name="l00489"></a>00489 
+<a name="l00491"></a><a class="code" href="classbdm_1_1mpdf.html#af0c1db6fcbb3aae2dd6123884457a367">00491</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#af0c1db6fcbb3aae2dd6123884457a367" title="Returns a sample from the density conditioned on cond, .">samplecond</a> ( <span class="keyword">const</span> vec &amp;cond ) {
+<a name="l00492"></a>00492                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
+<a name="l00493"></a>00493                 <span class="keywordflow">return</span> vec();
+<a name="l00494"></a>00494         }
+<a name="l00495"></a>00495 
+<a name="l00497"></a>00497         <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf.html#a6e497d501331057309d2fddf63259d1a" title="Returns.">samplecond_m</a> ( <span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N );
+<a name="l00498"></a>00498 
+<a name="l00500"></a><a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b">00500</a>         <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;cond ) {
+<a name="l00501"></a>00501                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
+<a name="l00502"></a>00502                 <span class="keywordflow">return</span> 0.0;
+<a name="l00503"></a>00503         }
+<a name="l00504"></a>00504 
+<a name="l00506"></a><a class="code" href="classbdm_1_1mpdf.html#a0b0ed1ed663071bb7cf4a1349eb94fcb">00506</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#a0b0ed1ed663071bb7cf4a1349eb94fcb" title="Matrix version of evallogcond.">evallogcond_m</a> ( <span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) {
+<a name="l00507"></a>00507                 vec v ( Dt.cols() );
+<a name="l00508"></a>00508                 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i &lt; Dt.cols(); i++ ) {
+<a name="l00509"></a>00509                         v ( i ) = <a class="code" href="classbdm_1_1mpdf.html#a6336a8a72462e2a56a3989a220f18b1b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( Dt.get_col ( i ), cond );
+<a name="l00510"></a>00510                 }
+<a name="l00511"></a>00511                 <span class="keywordflow">return</span> v;
 <a name="l00512"></a>00512         }
-<a name="l00513"></a>00513         <span class="keyword">const</span> RV&amp; _rvc()<span class="keyword"> const </span>{
-<a name="l00514"></a>00514                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;
-<a name="l00515"></a>00515         }
-<a name="l00516"></a>00516 
-<a name="l00517"></a>00517         <span class="keywordtype">int</span> dimension()<span class="keyword"> const </span>{
-<a name="l00518"></a>00518                 <span class="keywordflow">return</span> ep-&gt;dimension();
-<a name="l00519"></a>00519         }
-<a name="l00520"></a>00520         <span class="keywordtype">int</span> dimensionc() {
-<a name="l00521"></a>00521                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;
-<a name="l00522"></a>00522         }
-<a name="l00523"></a>00523 
-<a name="l00533"></a>00533         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a30a0bceb948e287d497c578e371b1667" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> );
-<a name="l00535"></a>00535 
-<a name="l00538"></a>00538         <span class="keywordtype">void</span> set_rvc ( <span class="keyword">const</span> RV &amp;rvc0 ) {
-<a name="l00539"></a>00539                 <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> = rvc0;
-<a name="l00540"></a>00540         }
-<a name="l00541"></a>00541         <span class="keywordtype">void</span> set_rv ( <span class="keyword">const</span> RV &amp;rv0 ) {
-<a name="l00542"></a>00542                 ep-&gt;set_rv ( rv0 );
-<a name="l00543"></a>00543         }
-<a name="l00544"></a>00544         <span class="keywordtype">bool</span> isnamed() {
-<a name="l00545"></a>00545                 <span class="keywordflow">return</span> ( ep-&gt;isnamed() ) &amp;&amp; ( <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> == <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>._dsize() );
-<a name="l00546"></a>00546         }
-<a name="l00548"></a>00548 };
-<a name="l00549"></a>00549 SHAREDPTR ( mpdf );
-<a name="l00550"></a>00550 
-<a name="l00552"></a>00552 <span class="keyword">template</span> &lt;<span class="keyword">class</span> EPDF&gt;
-<a name="l00553"></a><a class="code" href="classbdm_1_1mpdf__internal.html">00553</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf__internal.html" title="Mpdf with internal epdf that is modified by function condition.">mpdf_internal</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> {
-<a name="l00554"></a>00554 <span class="keyword">protected</span> :
-<a name="l00556"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468">00556</a>         EPDF <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>;
-<a name="l00557"></a>00557 <span class="keyword">public</span>:
-<a name="l00559"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f">00559</a>         <a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f" title="constructor">mpdf_internal</a>() : <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>(), <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>() {
-<a name="l00560"></a>00560                 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a> );
-<a name="l00561"></a>00561         }
-<a name="l00562"></a>00562 
-<a name="l00565"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">00565</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( <span class="keyword">const</span> vec &amp;cond ) {
-<a name="l00566"></a>00566                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
-<a name="l00567"></a>00567         }
-<a name="l00568"></a>00568 
-<a name="l00570"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a">00570</a>         EPDF&amp; <a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a" title="access function to iepdf">e</a>() {
-<a name="l00571"></a>00571                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>;
-<a name="l00572"></a>00572         }
-<a name="l00573"></a>00573 
-<a name="l00575"></a>00575         vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">samplecond</a> ( <span class="keyword">const</span> vec &amp;cond );
-<a name="l00577"></a>00577         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">evallogcond</a> ( <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond );
-<a name="l00579"></a>00579         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> ( <span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond );
-<a name="l00581"></a>00581         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> ( <span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond );
-<a name="l00583"></a>00583         <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">samplecond_m</a> ( <span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N );
-<a name="l00584"></a>00584 };
-<a name="l00585"></a>00585 
-<a name="l00611"></a><a class="code" href="classbdm_1_1datalink.html">00611</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> {
-<a name="l00612"></a>00612 <span class="keyword">protected</span>:
-<a name="l00614"></a><a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c">00614</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>;
-<a name="l00615"></a>00615 
-<a name="l00617"></a><a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045">00617</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a>;
-<a name="l00618"></a>00618 
-<a name="l00620"></a><a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb">00620</a>         ivec <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>;
-<a name="l00621"></a>00621 
-<a name="l00622"></a>00622 <span class="keyword">public</span>:
-<a name="l00624"></a><a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2">00624</a>         <a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a>() : <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> ( 0 ), <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> ( 0 ) { }
-<a name="l00625"></a>00625 
-<a name="l00627"></a><a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd">00627</a>         <a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd" title="Convenience constructor.">datalink</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up ) {
-<a name="l00628"></a>00628                 <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up );
-<a name="l00629"></a>00629         }
-<a name="l00630"></a>00630 
-<a name="l00632"></a>00632         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up );
-<a name="l00633"></a>00633 
-<a name="l00635"></a>00635         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keywordtype">int</span> ds, <span class="keywordtype">int</span> us, <span class="keyword">const</span> ivec &amp;upind );
-<a name="l00636"></a>00636 
-<a name="l00638"></a><a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5">00638</a>         vec <a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &amp;quot;Up&amp;quot;.">pushdown</a> ( <span class="keyword">const</span> vec &amp;val_up ) {
-<a name="l00639"></a>00639                 vec tmp ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> );
-<a name="l00640"></a>00640                 <a class="code" href="classbdm_1_1datalink.html#abfc15c5e565d4dc1d0110deb5e8c3e6b" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val_up, tmp );
-<a name="l00641"></a>00641                 <span class="keywordflow">return</span> tmp;
+<a name="l00513"></a>00513 
+<a name="l00515"></a><a class="code" href="classbdm_1_1mpdf.html#a2a0d03756f59924fd038980ee60bd904">00515</a>         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf.html#a2a0d03756f59924fd038980ee60bd904" title="Array&amp;lt;vec&amp;gt; version of evallogcond.">evallogcond_m</a> ( <span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) {
+<a name="l00516"></a>00516                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
+<a name="l00517"></a>00517                 <span class="keywordflow">return</span> vec();
+<a name="l00518"></a>00518         }
+<a name="l00519"></a>00519 
+<a name="l00522"></a>00522 
+<a name="l00523"></a>00523         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; _rv()<span class="keyword"> const </span>{
+<a name="l00524"></a>00524                 <span class="keywordflow">return</span> ep-&gt;<a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();
+<a name="l00525"></a>00525         }
+<a name="l00526"></a>00526         <span class="keyword">const</span> RV&amp; _rvc()<span class="keyword"> const </span>{
+<a name="l00527"></a>00527                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>;
+<a name="l00528"></a>00528         }
+<a name="l00529"></a>00529 
+<a name="l00530"></a>00530         <span class="keywordtype">int</span> dimension()<span class="keyword"> const </span>{
+<a name="l00531"></a>00531                 <span class="keywordflow">return</span> ep-&gt;dimension();
+<a name="l00532"></a>00532         }
+<a name="l00533"></a>00533         <span class="keywordtype">int</span> dimensionc() {
+<a name="l00534"></a>00534                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a>;
+<a name="l00535"></a>00535         }
+<a name="l00536"></a>00536 
+<a name="l00546"></a>00546         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a30a0bceb948e287d497c578e371b1667" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> );
+<a name="l00548"></a>00548 
+<a name="l00551"></a>00551         <span class="keywordtype">void</span> set_rvc ( <span class="keyword">const</span> RV &amp;rvc0 ) {
+<a name="l00552"></a>00552                 <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a> = rvc0;
+<a name="l00553"></a>00553         }
+<a name="l00554"></a>00554         <span class="keywordtype">void</span> set_rv ( <span class="keyword">const</span> RV &amp;rv0 ) {
+<a name="l00555"></a>00555                 ep-&gt;set_rv ( rv0 );
+<a name="l00556"></a>00556         }
+<a name="l00557"></a>00557         <span class="keywordtype">bool</span> isnamed() {
+<a name="l00558"></a>00558                 <span class="keywordflow">return</span> ( ep-&gt;isnamed() ) &amp;&amp; ( <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> == <a class="code" href="classbdm_1_1mpdf.html#a5a5f08950daa08b85b01ddf4e1c36288" title="random variable in condition">rvc</a>._dsize() );
+<a name="l00559"></a>00559         }
+<a name="l00561"></a>00561 };
+<a name="l00562"></a>00562 SHAREDPTR ( mpdf );
+<a name="l00563"></a>00563 
+<a name="l00565"></a>00565 <span class="keyword">template</span> &lt;<span class="keyword">class</span> EPDF&gt;
+<a name="l00566"></a><a class="code" href="classbdm_1_1mpdf__internal.html">00566</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mpdf__internal.html" title="Mpdf with internal epdf that is modified by function condition.">mpdf_internal</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> {
+<a name="l00567"></a>00567 <span class="keyword">protected</span> :
+<a name="l00569"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468">00569</a>         EPDF <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>;
+<a name="l00570"></a>00570 <span class="keyword">public</span>:
+<a name="l00572"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f">00572</a>         <a class="code" href="classbdm_1_1mpdf__internal.html#ae054b86262261abe0724f5890218689f" title="constructor">mpdf_internal</a>() : <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>(), <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>() {
+<a name="l00573"></a>00573                 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a> );
+<a name="l00574"></a>00574         }
+<a name="l00575"></a>00575 
+<a name="l00578"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">00578</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( <span class="keyword">const</span> vec &amp;cond ) {
+<a name="l00579"></a>00579                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
+<a name="l00580"></a>00580         }
+<a name="l00581"></a>00581 
+<a name="l00583"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a">00583</a>         EPDF&amp; <a class="code" href="classbdm_1_1mpdf__internal.html#a6b4d1cb8d7e230e313b4f0c905874d5a" title="access function to iepdf">e</a>() {
+<a name="l00584"></a>00584                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>;
+<a name="l00585"></a>00585         }
+<a name="l00586"></a>00586 
+<a name="l00588"></a>00588         vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">samplecond</a> ( <span class="keyword">const</span> vec &amp;cond );
+<a name="l00590"></a>00590         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">evallogcond</a> ( <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond );
+<a name="l00592"></a>00592         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> ( <span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond );
+<a name="l00594"></a>00594         <span class="keyword">virtual</span> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">evallogcond_m</a> ( <span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond );
+<a name="l00596"></a>00596         <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">samplecond_m</a> ( <span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N );
+<a name="l00597"></a>00597 };
+<a name="l00598"></a>00598 
+<a name="l00624"></a><a class="code" href="classbdm_1_1datalink.html">00624</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> {
+<a name="l00625"></a>00625 <span class="keyword">protected</span>:
+<a name="l00627"></a><a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c">00627</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>;
+<a name="l00628"></a>00628 
+<a name="l00630"></a><a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045">00630</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a>;
+<a name="l00631"></a>00631 
+<a name="l00633"></a><a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb">00633</a>         ivec <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>;
+<a name="l00634"></a>00634 
+<a name="l00635"></a>00635 <span class="keyword">public</span>:
+<a name="l00637"></a><a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2">00637</a>         <a class="code" href="classbdm_1_1datalink.html#ab8b5d5074fc1310a37c3713d58b900e2" title="Constructor.">datalink</a>() : <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> ( 0 ), <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> ( 0 ) { }
+<a name="l00638"></a>00638 
+<a name="l00640"></a><a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd">00640</a>         <a class="code" href="classbdm_1_1datalink.html#a4016403730eb742462614d60393565cd" title="Convenience constructor.">datalink</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up ) {
+<a name="l00641"></a>00641                 <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up );
 <a name="l00642"></a>00642         }
-<a name="l00644"></a><a class="code" href="classbdm_1_1datalink.html#abfc15c5e565d4dc1d0110deb5e8c3e6b">00644</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#abfc15c5e565d4dc1d0110deb5e8c3e6b" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <span class="keyword">const</span> vec &amp;val_up, vec &amp;val_down ) {
-<a name="l00645"></a>00645                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">&quot;Wrong val_up&quot;</span> );
-<a name="l00646"></a>00646                 val_down = val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> );
-<a name="l00647"></a>00647         }
-<a name="l00649"></a><a class="code" href="classbdm_1_1datalink.html#a610e966f2edb1fcd6a5b28267c571793">00649</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#a610e966f2edb1fcd6a5b28267c571793" title="Fill val of &amp;quot;Up&amp;quot; by my pieces.">pushup</a> ( vec &amp;val_up, <span class="keyword">const</span> vec &amp;val ) {
-<a name="l00650"></a>00650                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">&quot;Wrong val&quot;</span> );
-<a name="l00651"></a>00651                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">&quot;Wrong val_up&quot;</span> );
-<a name="l00652"></a>00652                 set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>, val );
-<a name="l00653"></a>00653         }
-<a name="l00655"></a><a class="code" href="classbdm_1_1datalink.html#a340c5a253544a1dc2fd87932a5341c32">00655</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a340c5a253544a1dc2fd87932a5341c32" title="access functions">_upsize</a>() {
-<a name="l00656"></a>00656                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a>;
-<a name="l00657"></a>00657         }
-<a name="l00659"></a><a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698">00659</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>() {
-<a name="l00660"></a>00660                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>;
-<a name="l00661"></a>00661         }
-<a name="l00662"></a>00662 };
-<a name="l00663"></a>00663 
-<a name="l00666"></a><a class="code" href="classbdm_1_1datalink__part.html">00666</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> {
-<a name="l00667"></a>00667 <span class="keyword">protected</span>:
-<a name="l00669"></a><a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943">00669</a>         ivec <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>;
-<a name="l00670"></a>00670 <span class="keyword">public</span>:
-<a name="l00671"></a>00671         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__part.html#a6cef1083755c27e4476501abe6f49dce" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up );
-<a name="l00673"></a><a class="code" href="classbdm_1_1datalink__part.html#aaba9b673ef82584e1bc06cc7a32b0a59">00673</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__part.html#aaba9b673ef82584e1bc06cc7a32b0a59" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <span class="keyword">const</span> vec &amp;val_up, vec &amp;val_down ) {
-<a name="l00674"></a>00674                 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>, val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> ) );
-<a name="l00675"></a>00675         }
-<a name="l00676"></a>00676 };
-<a name="l00677"></a>00677 
-<a name="l00682"></a><a class="code" href="classbdm_1_1datalink__buffered.html">00682</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a> {
-<a name="l00683"></a>00683 <span class="keyword">protected</span>:
-<a name="l00685"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988">00685</a>         vec <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>;
-<a name="l00687"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc">00687</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>;
-<a name="l00689"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7">00689</a>         ivec <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>;
-<a name="l00691"></a><a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5">00691</a>         ivec <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a>;
-<a name="l00693"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc">00693</a>         ivec <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>;
-<a name="l00694"></a>00694 <span class="keyword">public</span>:
-<a name="l00695"></a>00695 
-<a name="l00696"></a>00696         <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a>() : <a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a>(), <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> ( 0 ), <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a> ( 0 ), <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a> ( 0 ) {};
-<a name="l00698"></a><a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f">00698</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f" title="push current data to history">step</a> ( <span class="keyword">const</span> vec &amp;val_up ) {
-<a name="l00699"></a>00699                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() &gt; 0 ) {
-<a name="l00700"></a>00700                         <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>.shift_right ( 0, <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
-<a name="l00701"></a>00701                   <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>.set_subvector ( 0, val_up(<a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>) ); <span class="comment">// write U after Drv</span>
-<a name="l00702"></a>00702                 }
-<a name="l00703"></a>00703         }
-<a name="l00705"></a><a class="code" href="classbdm_1_1datalink__buffered.html#ae665d66cb42862c1181645c438110a96">00705</a>         vec <a class="code" href="classbdm_1_1datalink__buffered.html#ae665d66cb42862c1181645c438110a96" title="Get val for myself from val of &amp;quot;Up&amp;quot;.">pushdown</a> ( <span class="keyword">const</span> vec &amp;val_up ) {
-<a name="l00706"></a>00706                 vec tmp ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> );
-<a name="l00707"></a>00707                 <a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val_up, tmp );
-<a name="l00708"></a>00708                 <span class="keywordflow">return</span> tmp;
-<a name="l00709"></a>00709         }
-<a name="l00710"></a>00710 
-<a name="l00711"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f">00711</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <span class="keyword">const</span> vec &amp;val_up, vec &amp;val_down ) {
-<a name="l00712"></a>00712                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( val_down.length() &gt;= <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>, <span class="stringliteral">&quot;short val_down&quot;</span> );
-<a name="l00713"></a>00713 
-<a name="l00714"></a>00714                 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>, val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> ) ); <span class="comment">// copy direct values</span>
-<a name="l00715"></a>00715                 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>, <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> ( <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a> ) ); <span class="comment">// copy delayed values</span>
+<a name="l00643"></a>00643 
+<a name="l00645"></a>00645         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up );
+<a name="l00646"></a>00646 
+<a name="l00648"></a>00648         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keywordtype">int</span> ds, <span class="keywordtype">int</span> us, <span class="keyword">const</span> ivec &amp;upind );
+<a name="l00649"></a>00649 
+<a name="l00651"></a><a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5">00651</a>         vec <a class="code" href="classbdm_1_1datalink.html#a5b5368c3899eed2f670d09142c2548e5" title="Get val for myself from val of &amp;quot;Up&amp;quot;.">pushdown</a> ( <span class="keyword">const</span> vec &amp;val_up ) {
+<a name="l00652"></a>00652                 vec tmp ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> );
+<a name="l00653"></a>00653                 <a class="code" href="classbdm_1_1datalink.html#abfc15c5e565d4dc1d0110deb5e8c3e6b" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val_up, tmp );
+<a name="l00654"></a>00654                 <span class="keywordflow">return</span> tmp;
+<a name="l00655"></a>00655         }
+<a name="l00657"></a><a class="code" href="classbdm_1_1datalink.html#abfc15c5e565d4dc1d0110deb5e8c3e6b">00657</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#abfc15c5e565d4dc1d0110deb5e8c3e6b" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <span class="keyword">const</span> vec &amp;val_up, vec &amp;val_down ) {
+<a name="l00658"></a>00658                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">&quot;Wrong val_up&quot;</span> );
+<a name="l00659"></a>00659                 val_down = val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> );
+<a name="l00660"></a>00660         }
+<a name="l00662"></a><a class="code" href="classbdm_1_1datalink.html#a610e966f2edb1fcd6a5b28267c571793">00662</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink.html#a610e966f2edb1fcd6a5b28267c571793" title="Fill val of &amp;quot;Up&amp;quot; by my pieces.">pushup</a> ( vec &amp;val_up, <span class="keyword">const</span> vec &amp;val ) {
+<a name="l00663"></a>00663                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> == val.length(), <span class="stringliteral">&quot;Wrong val&quot;</span> );
+<a name="l00664"></a>00664                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> == val_up.length(), <span class="stringliteral">&quot;Wrong val_up&quot;</span> );
+<a name="l00665"></a>00665                 set_subvector ( val_up, <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>, val );
+<a name="l00666"></a>00666         }
+<a name="l00668"></a><a class="code" href="classbdm_1_1datalink.html#a340c5a253544a1dc2fd87932a5341c32">00668</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a340c5a253544a1dc2fd87932a5341c32" title="access functions">_upsize</a>() {
+<a name="l00669"></a>00669                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a>;
+<a name="l00670"></a>00670         }
+<a name="l00672"></a><a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698">00672</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>() {
+<a name="l00673"></a>00673                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>;
+<a name="l00674"></a>00674         }
+<a name="l00675"></a>00675 };
+<a name="l00676"></a>00676 
+<a name="l00679"></a><a class="code" href="classbdm_1_1datalink__part.html">00679</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> {
+<a name="l00680"></a>00680 <span class="keyword">protected</span>:
+<a name="l00682"></a><a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943">00682</a>         ivec <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>;
+<a name="l00683"></a>00683 <span class="keyword">public</span>:
+<a name="l00684"></a>00684         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__part.html#a6cef1083755c27e4476501abe6f49dce" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up );
+<a name="l00686"></a><a class="code" href="classbdm_1_1datalink__part.html#aaba9b673ef82584e1bc06cc7a32b0a59">00686</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__part.html#aaba9b673ef82584e1bc06cc7a32b0a59" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <span class="keyword">const</span> vec &amp;val_up, vec &amp;val_down ) {
+<a name="l00687"></a>00687                 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>, val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> ) );
+<a name="l00688"></a>00688         }
+<a name="l00689"></a>00689 };
+<a name="l00690"></a>00690 
+<a name="l00695"></a><a class="code" href="classbdm_1_1datalink__buffered.html">00695</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a> {
+<a name="l00696"></a>00696 <span class="keyword">protected</span>:
+<a name="l00698"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988">00698</a>         vec <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>;
+<a name="l00700"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc">00700</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>;
+<a name="l00702"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7">00702</a>         ivec <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>;
+<a name="l00704"></a><a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5">00704</a>         ivec <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a>;
+<a name="l00706"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc">00706</a>         ivec <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>;
+<a name="l00707"></a>00707 <span class="keyword">public</span>:
+<a name="l00708"></a>00708 
+<a name="l00709"></a>00709         <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a>() : <a class="code" href="classbdm_1_1datalink__part.html">datalink_part</a>(), <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> ( 0 ), <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a> ( 0 ), <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a> ( 0 ) {};
+<a name="l00711"></a><a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f">00711</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f" title="push current data to history">step</a> ( <span class="keyword">const</span> vec &amp;val_up ) {
+<a name="l00712"></a>00712                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>.length() &gt; 0 ) {
+<a name="l00713"></a>00713                         <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>.shift_right ( 0, <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>.length() );
+<a name="l00714"></a>00714                   <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>.set_subvector ( 0, val_up(<a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a>) ); 
+<a name="l00715"></a>00715                 }
 <a name="l00716"></a>00716         }
-<a name="l00717"></a>00717 
-<a name="l00718"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a">00718</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up ) {
-<a name="l00719"></a>00719                 <span class="comment">// create link between up and down</span>
-<a name="l00720"></a>00720                 <a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">datalink_part::set_connection</a> ( rv, rv_up );
-<a name="l00721"></a>00721 
-<a name="l00722"></a>00722                 <span class="comment">// create rvs of history</span>
-<a name="l00723"></a>00723                 <span class="comment">// we can store only what we get in rv_up - everything else is removed</span>
-<a name="l00724"></a>00724                 ivec valid_ids = rv.<a class="code" href="classbdm_1_1RV.html#aa858d36d0264e1f1c89500531162fdf1" title="Find indices of self in another rv, ignore time,.">findself_ids</a> ( rv_up );
-<a name="l00725"></a>00725                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rv_hist = rv.<a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( find ( valid_ids &gt;= 0 ) ); <span class="comment">// select only rvs that are in rv_up</span>
-<a name="l00726"></a>00726           <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rv_hist0 =rv_hist.remove_time();  <span class="comment">// these RVs will form history at time =0</span>
-<a name="l00727"></a>00727           <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a> = rv_hist0.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a>(rv_up); <span class="comment">// indeces of elements of rv_up to be copied</span>
-<a name="l00728"></a>00728           <span class="comment">// now we need to know what is needed from Up</span>
-<a name="l00729"></a>00729                 rv_hist = rv_hist.<a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e" title="return rvs with expanded delayes and sorted in the order of:">expand_delayes</a>(); <span class="comment">// full regressor - including time 0</span>
-<a name="l00730"></a>00730           <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>=rv_hist.<a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a>(rv_hist0);   <span class="comment">// remove time 0</span>
-<a name="l00731"></a>00731                 <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> = zeros ( <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
-<a name="l00732"></a>00732 
-<a name="l00733"></a>00733                 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( rv, <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a>, <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a> );
+<a name="l00718"></a><a class="code" href="classbdm_1_1datalink__buffered.html#ae665d66cb42862c1181645c438110a96">00718</a>         vec <a class="code" href="classbdm_1_1datalink__buffered.html#ae665d66cb42862c1181645c438110a96" title="Get val for myself from val of &amp;quot;Up&amp;quot;.">pushdown</a> ( <span class="keyword">const</span> vec &amp;val_up ) {
+<a name="l00719"></a>00719                 vec tmp ( <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> );
+<a name="l00720"></a>00720                 <a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val_up, tmp );
+<a name="l00721"></a>00721                 <span class="keywordflow">return</span> tmp;
+<a name="l00722"></a>00722         }
+<a name="l00723"></a>00723 
+<a name="l00724"></a><a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f">00724</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <span class="keyword">const</span> vec &amp;val_up, vec &amp;val_down ) {
+<a name="l00725"></a>00725                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( val_down.length() &gt;= <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a>, <span class="stringliteral">&quot;short val_down&quot;</span> );
+<a name="l00726"></a>00726 
+<a name="l00727"></a>00727                 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>, val_up ( <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a> ) ); <span class="comment">// copy direct values</span>
+<a name="l00728"></a>00728                 set_subvector ( val_down, <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>, <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> ( <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a> ) ); <span class="comment">// copy delayed values</span>
+<a name="l00729"></a>00729         }
+<a name="l00730"></a>00730 
+<a name="l00731"></a><a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a">00731</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up ) {
+<a name="l00732"></a>00732                 <span class="comment">// create link between up and down</span>
+<a name="l00733"></a>00733                 <a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">datalink_part::set_connection</a> ( rv, rv_up );
 <a name="l00734"></a>00734 
-<a name="l00735"></a>00735                 <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>.length() + <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>.length();
-<a name="l00736"></a>00736                 <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> = <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>.length();
-<a name="l00737"></a>00737         }
-<a name="l00738"></a>00738 };
-<a name="l00739"></a>00739 
-<a name="l00741"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html">00741</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__2to1__buffered.html" title="buffered datalink from 2 vectors to 1">datalink_2to1_buffered</a> {
-<a name="l00742"></a>00742 <span class="keyword">protected</span>:
-<a name="l00743"></a>00743         <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> dl1;
-<a name="l00744"></a>00744         <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> dl2;
-<a name="l00745"></a>00745 <span class="keyword">public</span>:
-<a name="l00747"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef1441b4885ae4d8e95b3ff28e575364">00747</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef1441b4885ae4d8e95b3ff28e575364" title="set connection between RVs">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up1, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up2 ) {
-<a name="l00748"></a>00748                 dl1.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up1 );
-<a name="l00749"></a>00749                 dl2.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up2 );
+<a name="l00735"></a>00735                 <span class="comment">// create rvs of history</span>
+<a name="l00736"></a>00736                 <span class="comment">// we can store only what we get in rv_up - everything else is removed</span>
+<a name="l00737"></a>00737                 ivec valid_ids = rv.<a class="code" href="classbdm_1_1RV.html#aa858d36d0264e1f1c89500531162fdf1" title="Find indices of self in another rv, ignore time,.">findself_ids</a> ( rv_up );
+<a name="l00738"></a>00738                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rv_hist = rv.<a class="code" href="classbdm_1_1RV.html#ac0c04ab99ded62e1e05bcefb151ebeb9" title="Select only variables at indices ind.">subselect</a> ( find ( valid_ids &gt;= 0 ) ); <span class="comment">// select only rvs that are in rv_up</span>
+<a name="l00739"></a>00739           <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rv_hist0 =rv_hist.remove_time();  <span class="comment">// these RVs will form history at time =0</span>
+<a name="l00740"></a>00740           <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a> = rv_hist0.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a>(rv_up); <span class="comment">// indeces of elements of rv_up to be copied</span>
+<a name="l00741"></a>00741           <span class="comment">// now we need to know what is needed from Up</span>
+<a name="l00742"></a>00742                 rv_hist = rv_hist.<a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e" title="return rvs with expanded delayes and sorted in the order of:">expand_delayes</a>(); <span class="comment">// full regressor - including time 0</span>
+<a name="l00743"></a>00743           <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>=rv_hist.<a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a>(rv_hist0);   <span class="comment">// remove time 0</span>
+<a name="l00744"></a>00744                 <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> = zeros ( <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
+<a name="l00745"></a>00745 
+<a name="l00746"></a>00746                 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( rv, <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a>, <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a> );
+<a name="l00747"></a>00747 
+<a name="l00748"></a>00748                 <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>.length() + <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>.length();
+<a name="l00749"></a>00749                 <a class="code" href="classbdm_1_1datalink.html#a0f0d0af6848114d96108d3a6af25a045" title="Remember how long val of &amp;quot;Up&amp;quot; should be.">upsize</a> = <a class="code" href="classbdm_1_1datalink.html#a240b37d793c6bdc32824ed0a0541b1eb" title="val-to-val link, indices of the upper val">v2v_up</a>.length();
 <a name="l00750"></a>00750         }
-<a name="l00751"></a>00751         <span class="keywordtype">void</span> filldown ( <span class="keyword">const</span> vec &amp;val1, <span class="keyword">const</span> vec &amp;val2, vec &amp;val_down ) {
-<a name="l00752"></a>00752                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( val_down.length() &gt;= dl1.<a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>() + dl2.<a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>(), <span class="stringliteral">&quot;short val_down&quot;</span> );
-<a name="l00753"></a>00753                 dl1.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val1, val_down );
-<a name="l00754"></a>00754                 dl2.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val2, val_down );
-<a name="l00755"></a>00755         }
-<a name="l00756"></a>00756         <span class="keywordtype">void</span> step ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;ut ) {
-<a name="l00757"></a>00757                 dl1.step ( dt );
-<a name="l00758"></a>00758                 dl2.step ( ut );
-<a name="l00759"></a>00759         }
-<a name="l00760"></a>00760 };
-<a name="l00761"></a>00761 
-<a name="l00762"></a>00762 
-<a name="l00763"></a>00763 
-<a name="l00765"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00765</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> {
-<a name="l00766"></a>00766 <span class="keyword">protected</span>:
-<a name="l00768"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9">00768</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>;
-<a name="l00769"></a>00769 
-<a name="l00771"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783">00771</a>         ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>;
-<a name="l00772"></a>00772 
-<a name="l00774"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc">00774</a>         ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>;
-<a name="l00775"></a>00775 
-<a name="l00776"></a>00776 <span class="keyword">public</span>:
-<a name="l00778"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6">00778</a>         <a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6" title="Constructor.">datalink_m2e</a>() : <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ( 0 ) { }
-<a name="l00779"></a>00779 
-<a name="l00781"></a>00781         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#aadd918bf877c48714cff51ee4ad989b0" title="Set connection between vectors.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up );
+<a name="l00752"></a><a class="code" href="classbdm_1_1datalink__buffered.html#ac95435dc0781d14529cddde9b2894b6d">00752</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__buffered.html#ac95435dc0781d14529cddde9b2894b6d" title="set history of variable given by rv1 to values of hist.">set_history</a>(<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; rv1, <span class="keyword">const</span> vec &amp;hist0){
+<a name="l00753"></a>00753                 <a class="code" href="bdmerror_8h.html#a7a3399d182b8e3065532596e76f84849" title="Throw std::runtime_exception if t is not true.">bdm_assert</a>(rv1.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>()==hist0.length(),<span class="stringliteral">&quot;hist is not compatible with given rv1&quot;</span>);
+<a name="l00754"></a>00754                 ivec ind_H;
+<a name="l00755"></a>00755                 ivec ind_h0;
+<a name="l00756"></a>00756                 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a>(rv1, ind_H, ind_h0); <span class="comment">// find indeces of rv in </span>
+<a name="l00757"></a>00757                 set_subvector(<a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>, ind_H, hist0(ind_h0)); <span class="comment">// copy given hist to appropriate places</span>
+<a name="l00758"></a>00758         }
+<a name="l00759"></a>00759 };
+<a name="l00760"></a>00760 
+<a name="l00762"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html">00762</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__2to1__buffered.html" title="buffered datalink from 2 vectors to 1">datalink_2to1_buffered</a> {
+<a name="l00763"></a>00763 <span class="keyword">protected</span>:
+<a name="l00764"></a>00764         <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> dl1;
+<a name="l00765"></a>00765         <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> dl2;
+<a name="l00766"></a>00766 <span class="keyword">public</span>:
+<a name="l00768"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef1441b4885ae4d8e95b3ff28e575364">00768</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef1441b4885ae4d8e95b3ff28e575364" title="set connection between RVs">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up1, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up2 ) {
+<a name="l00769"></a>00769                 dl1.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up1 );
+<a name="l00770"></a>00770                 dl2.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up2 );
+<a name="l00771"></a>00771         }
+<a name="l00772"></a>00772         <span class="keywordtype">void</span> filldown ( <span class="keyword">const</span> vec &amp;val1, <span class="keyword">const</span> vec &amp;val2, vec &amp;val_down ) {
+<a name="l00773"></a>00773                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( val_down.length() &gt;= dl1.<a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>() + dl2.<a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>(), <span class="stringliteral">&quot;short val_down&quot;</span> );
+<a name="l00774"></a>00774                 dl1.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val1, val_down );
+<a name="l00775"></a>00775                 dl2.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val2, val_down );
+<a name="l00776"></a>00776         }
+<a name="l00777"></a>00777         <span class="keywordtype">void</span> step ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;ut ) {
+<a name="l00778"></a>00778                 dl1.step ( dt );
+<a name="l00779"></a>00779                 dl2.step ( ut );
+<a name="l00780"></a>00780         }
+<a name="l00781"></a>00781 };
 <a name="l00782"></a>00782 
-<a name="l00784"></a>00784         vec <a class="code" href="classbdm_1_1datalink__m2e.html#a7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> ( <span class="keyword">const</span> vec &amp;val_up );
-<a name="l00785"></a>00785 
-<a name="l00787"></a>00787         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#ab29bc3c7bf2a1d87e77ccaa793d097d5" title="Copy corresponding values to Up.condition.">pushup_cond</a> ( vec &amp;val_up, <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond );
-<a name="l00788"></a>00788 };
-<a name="l00789"></a>00789 
-<a name="l00792"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00792</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html" title="DataLink is a connection between mpdf and its superordinate (Up) This class links...">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a> {
-<a name="l00793"></a>00793 <span class="keyword">protected</span>:
-<a name="l00795"></a><a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d">00795</a>         ivec <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>;
-<a name="l00797"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5">00797</a>         ivec <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>;
-<a name="l00798"></a>00798 
-<a name="l00799"></a>00799 <span class="keyword">public</span>:
-<a name="l00801"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287">00801</a>         <a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {};
-<a name="l00803"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4">00803</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc_up ) {
-<a name="l00804"></a>00804                 <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">datalink_m2e::set_connection</a> ( rv, rvc, rv_up );
-<a name="l00805"></a>00805                 <span class="comment">//establish c2c connection</span>
-<a name="l00806"></a>00806                 rvc.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a> );
-<a name="l00807"></a>00807                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>.length() + <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>.length() == <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">&quot;cond is not fully given&quot;</span> );
-<a name="l00808"></a>00808         }
-<a name="l00809"></a>00809 
-<a name="l00811"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90">00811</a>         vec <a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &amp;quot;Up&amp;quot;.">get_cond</a> ( <span class="keyword">const</span> vec &amp;val_up, <span class="keyword">const</span> vec &amp;cond_up ) {
-<a name="l00812"></a>00812                 vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> );
-<a name="l00813"></a>00813                 set_subvector ( tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a> ) );
-<a name="l00814"></a>00814                 set_subvector ( tmp, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, cond_up ( <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a> ) );
-<a name="l00815"></a>00815                 <span class="keywordflow">return</span> tmp;
-<a name="l00816"></a>00816         }
-<a name="l00818"></a>00818 
-<a name="l00819"></a>00819 };
-<a name="l00820"></a>00820 
-<a name="l00826"></a><a class="code" href="classbdm_1_1logger.html">00826</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
-<a name="l00827"></a>00827 <span class="keyword">protected</span>:
-<a name="l00829"></a><a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f">00829</a>         Array&lt;RV&gt; <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>;
-<a name="l00831"></a><a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02">00831</a>         Array&lt;string&gt; <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>;
-<a name="l00832"></a>00832 <span class="keyword">public</span>:
-<a name="l00834"></a><a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf">00834</a>         <a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a>() : <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( 0 ), <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> ( 0 ) {}
-<a name="l00835"></a>00835 
-<a name="l00838"></a><a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">00838</a>         <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keywordtype">string</span> prefix = <span class="stringliteral">&quot;&quot;</span> ) {
-<a name="l00839"></a>00839                 <span class="keywordtype">int</span> id;
-<a name="l00840"></a>00840                 <span class="keywordflow">if</span> ( rv.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() &gt; 0 ) {
-<a name="l00841"></a>00841                         <span class="keywordtype">id</span> = <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length();
-<a name="l00842"></a>00842                         <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> = concat ( <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix ); <span class="comment">// diff</span>
-<a name="l00843"></a>00843                         <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length ( <span class="keywordtype">id</span> + 1, <span class="keyword">true</span> );
-<a name="l00844"></a>00844                         <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( <span class="keywordtype">id</span> ) = rv;
-<a name="l00845"></a>00845                 } <span class="keywordflow">else</span> {
-<a name="l00846"></a>00846                         <span class="keywordtype">id</span> = -1;
-<a name="l00847"></a>00847                 }
-<a name="l00848"></a>00848                 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span>
-<a name="l00849"></a>00849         }
-<a name="l00850"></a>00850 
-<a name="l00852"></a><a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309">00852</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &amp;v ) {
-<a name="l00853"></a>00853                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
-<a name="l00854"></a>00854         };
-<a name="l00856"></a><a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6">00856</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6" title="log this double">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &amp;d ) {
-<a name="l00857"></a>00857                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
-<a name="l00858"></a>00858         };
-<a name="l00859"></a>00859 
-<a name="l00861"></a><a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99">00861</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99" title="Shifts storage position for another time step.">step</a>() {
-<a name="l00862"></a>00862                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemneted&quot;</span> );
-<a name="l00863"></a>00863         };
-<a name="l00864"></a>00864 
-<a name="l00866"></a><a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d">00866</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {};
-<a name="l00867"></a>00867 
-<a name="l00869"></a><a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc">00869</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {};
-<a name="l00870"></a>00870 
-<a name="l00871"></a>00871 };
-<a name="l00872"></a>00872 
-<a name="l00876"></a><a class="code" href="classbdm_1_1mepdf.html">00876</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> {
-<a name="l00878"></a>00878         <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> iepdf;
-<a name="l00879"></a>00879 <span class="keyword">public</span>:
-<a name="l00881"></a><a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155">00881</a>         <a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>() { }
-<a name="l00883"></a><a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c">00883</a>         <a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c" title="Set internal shared pointer.">mepdf</a> ( <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> em ) {
-<a name="l00884"></a>00884                 iepdf = em;
-<a name="l00885"></a>00885                 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( *iepdf.<a class="code" href="classbdm_1_1shared__ptr.html#a37ebcfb6750dd7b5630f1d2354c07a96">get</a>() );
-<a name="l00886"></a>00886                 <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> = 0;
-<a name="l00887"></a>00887         }
+<a name="l00783"></a>00783 
+<a name="l00784"></a>00784 
+<a name="l00786"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00786</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> {
+<a name="l00787"></a>00787 <span class="keyword">protected</span>:
+<a name="l00789"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9">00789</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>;
+<a name="l00790"></a>00790 
+<a name="l00792"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783">00792</a>         ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>;
+<a name="l00793"></a>00793 
+<a name="l00795"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc">00795</a>         ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>;
+<a name="l00796"></a>00796 
+<a name="l00797"></a>00797 <span class="keyword">public</span>:
+<a name="l00799"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6">00799</a>         <a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6" title="Constructor.">datalink_m2e</a>() : <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ( 0 ) { }
+<a name="l00800"></a>00800 
+<a name="l00802"></a>00802         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#aadd918bf877c48714cff51ee4ad989b0" title="Set connection between vectors.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up );
+<a name="l00803"></a>00803 
+<a name="l00805"></a>00805         vec <a class="code" href="classbdm_1_1datalink__m2e.html#a7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> ( <span class="keyword">const</span> vec &amp;val_up );
+<a name="l00806"></a>00806 
+<a name="l00808"></a>00808         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#ab29bc3c7bf2a1d87e77ccaa793d097d5" title="Copy corresponding values to Up.condition.">pushup_cond</a> ( vec &amp;val_up, <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond );
+<a name="l00809"></a>00809 };
+<a name="l00810"></a>00810 
+<a name="l00813"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00813</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html" title="DataLink is a connection between mpdf and its superordinate (Up) This class links...">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a> {
+<a name="l00814"></a>00814 <span class="keyword">protected</span>:
+<a name="l00816"></a><a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d">00816</a>         ivec <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>;
+<a name="l00818"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5">00818</a>         ivec <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>;
+<a name="l00819"></a>00819 
+<a name="l00820"></a>00820 <span class="keyword">public</span>:
+<a name="l00822"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287">00822</a>         <a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {};
+<a name="l00824"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4">00824</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc_up ) {
+<a name="l00825"></a>00825                 <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">datalink_m2e::set_connection</a> ( rv, rvc, rv_up );
+<a name="l00826"></a>00826                 <span class="comment">//establish c2c connection</span>
+<a name="l00827"></a>00827                 rvc.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a> );
+<a name="l00828"></a>00828                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>.length() + <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>.length() == <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">&quot;cond is not fully given&quot;</span> );
+<a name="l00829"></a>00829         }
+<a name="l00830"></a>00830 
+<a name="l00832"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90">00832</a>         vec <a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &amp;quot;Up&amp;quot;.">get_cond</a> ( <span class="keyword">const</span> vec &amp;val_up, <span class="keyword">const</span> vec &amp;cond_up ) {
+<a name="l00833"></a>00833                 vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> );
+<a name="l00834"></a>00834                 set_subvector ( tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a> ) );
+<a name="l00835"></a>00835                 set_subvector ( tmp, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, cond_up ( <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a> ) );
+<a name="l00836"></a>00836                 <span class="keywordflow">return</span> tmp;
+<a name="l00837"></a>00837         }
+<a name="l00839"></a>00839 
+<a name="l00840"></a>00840 };
+<a name="l00841"></a>00841 
+<a name="l00847"></a><a class="code" href="classbdm_1_1logger.html">00847</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
+<a name="l00848"></a>00848 <span class="keyword">protected</span>:
+<a name="l00850"></a><a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f">00850</a>         Array&lt;RV&gt; <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>;
+<a name="l00852"></a><a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02">00852</a>         Array&lt;string&gt; <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>;
+<a name="l00853"></a>00853 <span class="keyword">public</span>:
+<a name="l00855"></a><a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf">00855</a>         <a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a>() : <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( 0 ), <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> ( 0 ) {}
+<a name="l00856"></a>00856 
+<a name="l00859"></a><a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">00859</a>         <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keywordtype">string</span> prefix = <span class="stringliteral">&quot;&quot;</span> ) {
+<a name="l00860"></a>00860                 <span class="keywordtype">int</span> id;
+<a name="l00861"></a>00861                 <span class="keywordflow">if</span> ( rv.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() &gt; 0 ) {
+<a name="l00862"></a>00862                         <span class="keywordtype">id</span> = <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length();
+<a name="l00863"></a>00863                         <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> = concat ( <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix ); <span class="comment">// diff</span>
+<a name="l00864"></a>00864                         <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length ( <span class="keywordtype">id</span> + 1, <span class="keyword">true</span> );
+<a name="l00865"></a>00865                         <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( <span class="keywordtype">id</span> ) = rv;
+<a name="l00866"></a>00866                 } <span class="keywordflow">else</span> {
+<a name="l00867"></a>00867                         <span class="keywordtype">id</span> = -1;
+<a name="l00868"></a>00868                 }
+<a name="l00869"></a>00869                 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span>
+<a name="l00870"></a>00870         }
+<a name="l00871"></a>00871 
+<a name="l00873"></a><a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309">00873</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &amp;v ) {
+<a name="l00874"></a>00874                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
+<a name="l00875"></a>00875         };
+<a name="l00877"></a><a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6">00877</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6" title="log this double">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &amp;d ) {
+<a name="l00878"></a>00878                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
+<a name="l00879"></a>00879         };
+<a name="l00880"></a>00880 
+<a name="l00882"></a><a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99">00882</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99" title="Shifts storage position for another time step.">step</a>() {
+<a name="l00883"></a>00883                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemneted&quot;</span> );
+<a name="l00884"></a>00884         };
+<a name="l00885"></a>00885 
+<a name="l00887"></a><a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d">00887</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {};
 <a name="l00888"></a>00888 
-<a name="l00890"></a><a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e">00890</a>         vec <a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e" title="empty">samplecond</a> ( <span class="keyword">const</span> vec &amp;cond ) {
-<a name="l00891"></a>00891                 <span class="keywordflow">return</span> iepdf-&gt;sample();
-<a name="l00892"></a>00892         }
-<a name="l00893"></a><a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b">00893</a>         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond ) {
-<a name="l00894"></a>00894                 <span class="keywordflow">return</span> iepdf-&gt;evallog ( val );
-<a name="l00895"></a>00895         }
-<a name="l00896"></a>00896 
-<a name="l00904"></a>00904         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#a27ef18a3e3b1b5de02739d1324bf25fb" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> );
-<a name="l00905"></a>00905 };
-<a name="l00906"></a>00906 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( mepdf );
-<a name="l00907"></a>00907 SHAREDPTR ( mepdf );
-<a name="l00908"></a>00908 
-<a name="l00910"></a>00910 RV get_composite_rv ( <span class="keyword">const</span> Array&lt;shared_ptr&lt;mpdf&gt; &gt; &amp;mpdfs, <span class="keywordtype">bool</span> checkoverlap = <span class="keyword">false</span> );
-<a name="l00911"></a>00911 
-<a name="l00927"></a><a class="code" href="classbdm_1_1DS.html">00927</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
-<a name="l00928"></a>00928 <span class="keyword">protected</span>:
-<a name="l00930"></a><a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9">00930</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a>;
-<a name="l00932"></a><a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983">00932</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>;
-<a name="l00934"></a><a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd">00934</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd" title="size of output">ytsize</a>;
-<a name="l00936"></a><a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec">00936</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>;
-<a name="l00938"></a><a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702">00938</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span>
-<a name="l00940"></a><a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995">00940</a> <span class="comment"></span>                <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>; <span class="comment">//</span>
-<a name="l00942"></a><a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867">00942</a> <span class="comment"></span>        <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut;
-<a name="l00943"></a>00943 <span class="keyword">public</span>:
-<a name="l00945"></a><a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a">00945</a>                 <a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() : <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>(),<a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>() {};
-<a name="l00946"></a>00946 
-<a name="l00948"></a><a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba">00948</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt ) {
-<a name="l00949"></a>00949                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> );
-<a name="l00950"></a>00950         }
-<a name="l00951"></a>00951 
-<a name="l00953"></a><a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832">00953</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a> ( vec &amp;dt, <span class="keyword">const</span> ivec &amp;indeces ) {
-<a name="l00954"></a>00954                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> );
-<a name="l00955"></a>00955         }
-<a name="l00956"></a>00956 
-<a name="l00958"></a><a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a">00958</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> ( vec &amp;ut ) {
-<a name="l00959"></a>00959                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> );
-<a name="l00960"></a>00960         }
-<a name="l00961"></a>00961 
-<a name="l00963"></a><a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d">00963</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d" title="Accepts action variables at specific indeces.">write</a> ( vec &amp;ut, <span class="keyword">const</span> ivec &amp;indeces ) {
-<a name="l00964"></a>00964                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> );
-<a name="l00965"></a>00965         }
-<a name="l00966"></a>00966 
-<a name="l00968"></a>00968         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a9a14c64d881e838ddc3a5617ee8a973b" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>() = 0;
-<a name="l00969"></a>00969 
-<a name="l00971"></a><a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e">00971</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
-<a name="l00972"></a>00972                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> == <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <span class="stringliteral">&quot;invalid DS: dtsize (&quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> ) + <span class="stringliteral">&quot;) different from Drv &quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
-<a name="l00973"></a>00973                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> == <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <span class="stringliteral">&quot;invalid DS: utsize (&quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> ) + <span class="stringliteral">&quot;) different from Urv &quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
-<a name="l00974"></a>00974 
-<a name="l00975"></a>00975                 <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a> = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <span class="stringliteral">&quot;&quot;</span> );
-<a name="l00976"></a>00976                 L_ut = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">&quot;&quot;</span> );
+<a name="l00890"></a><a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc">00890</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {};
+<a name="l00891"></a>00891 
+<a name="l00892"></a>00892 };
+<a name="l00893"></a>00893 
+<a name="l00897"></a><a class="code" href="classbdm_1_1mepdf.html">00897</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> {
+<a name="l00899"></a>00899         <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> iepdf;
+<a name="l00900"></a>00900 <span class="keyword">public</span>:
+<a name="l00902"></a><a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155">00902</a>         <a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>() { }
+<a name="l00904"></a><a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c">00904</a>         <a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c" title="Set internal shared pointer.">mepdf</a> ( <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> em ) {
+<a name="l00905"></a>00905                 iepdf = em;
+<a name="l00906"></a>00906                 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( *iepdf.<a class="code" href="classbdm_1_1shared__ptr.html#a37ebcfb6750dd7b5630f1d2354c07a96">get</a>() );
+<a name="l00907"></a>00907                 <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> = 0;
+<a name="l00908"></a>00908         }
+<a name="l00909"></a>00909 
+<a name="l00911"></a><a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e">00911</a>         vec <a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e" title="empty">samplecond</a> ( <span class="keyword">const</span> vec &amp;cond ) {
+<a name="l00912"></a>00912                 <span class="keywordflow">return</span> iepdf-&gt;sample();
+<a name="l00913"></a>00913         }
+<a name="l00914"></a><a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b">00914</a>         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond ) {
+<a name="l00915"></a>00915                 <span class="keywordflow">return</span> iepdf-&gt;evallog ( val );
+<a name="l00916"></a>00916         }
+<a name="l00917"></a>00917 
+<a name="l00925"></a>00925         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#a27ef18a3e3b1b5de02739d1324bf25fb" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> );
+<a name="l00926"></a>00926 };
+<a name="l00927"></a>00927 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( mepdf );
+<a name="l00928"></a>00928 SHAREDPTR ( mepdf );
+<a name="l00929"></a>00929 
+<a name="l00931"></a>00931 RV get_composite_rv ( <span class="keyword">const</span> Array&lt;shared_ptr&lt;mpdf&gt; &gt; &amp;mpdfs, <span class="keywordtype">bool</span> checkoverlap = <span class="keyword">false</span> );
+<a name="l00932"></a>00932 
+<a name="l00948"></a><a class="code" href="classbdm_1_1DS.html">00948</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
+<a name="l00949"></a>00949 <span class="keyword">protected</span>:
+<a name="l00951"></a><a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9">00951</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a>;
+<a name="l00953"></a><a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983">00953</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>;
+<a name="l00955"></a><a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd">00955</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd" title="size of output">ytsize</a>;
+<a name="l00957"></a><a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec">00957</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>;
+<a name="l00959"></a><a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702">00959</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span>
+<a name="l00961"></a><a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995">00961</a> <span class="comment"></span>                <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>; <span class="comment">//</span>
+<a name="l00963"></a><a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867">00963</a> <span class="comment"></span>        <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut;
+<a name="l00964"></a>00964 <span class="keyword">public</span>:
+<a name="l00966"></a><a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a">00966</a>                 <a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() : <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>(),<a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>() {};
+<a name="l00967"></a>00967 
+<a name="l00969"></a><a class="code" href="classbdm_1_1DS.html#a76d11928675f276f805655ae2a05d773">00969</a>         <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#a76d11928675f276f805655ae2a05d773" title="Returns maximum number of provided data, by default it is set to maximum allowed...">max_length</a>() {<span class="keywordflow">return</span> std::numeric_limits&lt; int &gt;::max();}
+<a name="l00971"></a><a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba">00971</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt ) {
+<a name="l00972"></a>00972                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> );
+<a name="l00973"></a>00973         }
+<a name="l00975"></a><a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832">00975</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a> ( vec &amp;dt, <span class="keyword">const</span> ivec &amp;indeces ) {
+<a name="l00976"></a>00976                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> );
 <a name="l00977"></a>00977         }
-<a name="l00979"></a><a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf">00979</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
-<a name="l00980"></a>00980                 vec tmp ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() + <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
-<a name="l00981"></a>00981                 <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( tmp );
-<a name="l00982"></a>00982                 <span class="comment">// d is first in getdata</span>
-<a name="l00983"></a>00983                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, tmp.left ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
-<a name="l00984"></a>00984                 <span class="comment">// u follows after d in getdata</span>
-<a name="l00985"></a>00985                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( L_ut, tmp.mid ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
-<a name="l00986"></a>00986         }
-<a name="l00988"></a><a class="code" href="classbdm_1_1DS.html#a069497b610296be053d862a2493be0ce">00988</a>         <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#a069497b610296be053d862a2493be0ce" title="access function">_drv</a>()<span class="keyword"> const </span>{
-<a name="l00989"></a>00989                 <span class="comment">//              return concat (Drv, Urv);// why!!!</span>
-<a name="l00990"></a>00990                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>;<span class="comment">// why!!!</span>
-<a name="l00991"></a>00991         }
-<a name="l00993"></a><a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33">00993</a>         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{
-<a name="l00994"></a>00994                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>;
-<a name="l00995"></a>00995         }
-<a name="l00997"></a><a class="code" href="classbdm_1_1DS.html#ac09878f86907329ac631a3df8755c558">00997</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#ac09878f86907329ac631a3df8755c558" title="access function">_yrv</a>()<span class="keyword"> const </span>{
-<a name="l00998"></a>00998                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>;
-<a name="l00999"></a>00999                 }
-<a name="l01001"></a><a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc">01001</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc" title="set random variables">set_drv</a> (<span class="keyword">const</span>  <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;yrv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;urv) {
-<a name="l01002"></a>01002                     <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a> = yrv;
-<a name="l01003"></a>01003                         <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = concat(yrv,urv);
-<a name="l01004"></a>01004                 <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv;
-<a name="l01005"></a>01005         }
-<a name="l01006"></a>01006 };
-<a name="l01007"></a>01007 
-<a name="l01029"></a><a class="code" href="classbdm_1_1BM.html">01029</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
-<a name="l01030"></a>01030 <span class="keyword">protected</span>:
-<a name="l01032"></a><a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed">01032</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;
-<a name="l01034"></a><a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a">01034</a>         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;
-<a name="l01036"></a><a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee">01036</a>         <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>;
-<a name="l01037"></a>01037 <span class="keyword">public</span>:
-<a name="l01040"></a>01040 
-<a name="l01041"></a>01041         <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>() : <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( 0 ), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( true ), <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 4 ), <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 4 ) {
-<a name="l01042"></a>01042                 <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> = -1;<span class="comment">/*empty IDs*/</span>
-<a name="l01043"></a>01043                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> = 0;
-<a name="l01044"></a>01044                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) = 1;  <span class="comment">/*log only mean*/</span>
-<a name="l01045"></a>01045         };
-<a name="l01046"></a>01046         <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &amp;B ) :  <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ( B.<a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( B.<a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( B.<a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ) {}
-<a name="l01049"></a><a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">01049</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">_copy_</a>()<span class="keyword"> const </span>{
-<a name="l01050"></a>01050                 <span class="keywordflow">return</span> NULL;
-<a name="l01051"></a>01051         };
-<a name="l01053"></a>01053 
-<a name="l01056"></a>01056 
-<a name="l01060"></a>01060         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> ( <span class="keyword">const</span> vec &amp;dt ) = 0;
-<a name="l01062"></a>01062         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> ( <span class="keyword">const</span> mat &amp;Dt );
-<a name="l01065"></a><a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">01065</a>         <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( <span class="keyword">const</span> vec &amp;dt )<span class="keyword"> const </span>{
-<a name="l01066"></a>01066                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
-<a name="l01067"></a>01067                 <span class="keywordflow">return</span> 0.0;
-<a name="l01068"></a>01068         }
-<a name="l01069"></a>01069 
-<a name="l01071"></a><a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae">01071</a>         vec <a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> ( <span class="keyword">const</span> mat &amp;dt )<span class="keyword"> const </span>{
-<a name="l01072"></a>01072                 vec tmp ( dt.cols() );
-<a name="l01073"></a>01073                 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i &lt; dt.cols(); i++ ) {
-<a name="l01074"></a>01074                         tmp ( i ) = <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( dt.get_col ( i ) );
-<a name="l01075"></a>01075                 }
-<a name="l01076"></a>01076                 <span class="keywordflow">return</span> tmp;
-<a name="l01077"></a>01077         }
+<a name="l00978"></a>00978 
+<a name="l00980"></a><a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a">00980</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> ( vec &amp;ut ) {
+<a name="l00981"></a>00981                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> );
+<a name="l00982"></a>00982         }
+<a name="l00983"></a>00983 
+<a name="l00985"></a><a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d">00985</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d" title="Accepts action variables at specific indeces.">write</a> ( vec &amp;ut, <span class="keyword">const</span> ivec &amp;indeces ) {
+<a name="l00986"></a>00986                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> );
+<a name="l00987"></a>00987         }
+<a name="l00988"></a>00988 
+<a name="l00990"></a>00990         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a9a14c64d881e838ddc3a5617ee8a973b" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>() = 0;
+<a name="l00991"></a>00991 
+<a name="l00993"></a><a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e">00993</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
+<a name="l00994"></a>00994                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> == <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <span class="stringliteral">&quot;invalid DS: dtsize (&quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> ) + <span class="stringliteral">&quot;) different from Drv &quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
+<a name="l00995"></a>00995                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> == <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <span class="stringliteral">&quot;invalid DS: utsize (&quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> ) + <span class="stringliteral">&quot;) different from Urv &quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
+<a name="l00996"></a>00996 
+<a name="l00997"></a>00997                 <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a> = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <span class="stringliteral">&quot;&quot;</span> );
+<a name="l00998"></a>00998                 L_ut = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">&quot;&quot;</span> );
+<a name="l00999"></a>00999         }
+<a name="l01001"></a><a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf">01001</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
+<a name="l01002"></a>01002                 vec tmp ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() + <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
+<a name="l01003"></a>01003                 <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( tmp );
+<a name="l01004"></a>01004                 <span class="comment">// d is first in getdata</span>
+<a name="l01005"></a>01005                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, tmp.left ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
+<a name="l01006"></a>01006                 <span class="comment">// u follows after d in getdata</span>
+<a name="l01007"></a>01007                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( L_ut, tmp.mid ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) );
+<a name="l01008"></a>01008         }
+<a name="l01010"></a><a class="code" href="classbdm_1_1DS.html#a069497b610296be053d862a2493be0ce">01010</a>         <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#a069497b610296be053d862a2493be0ce" title="access function">_drv</a>()<span class="keyword"> const </span>{
+<a name="l01011"></a>01011                 <span class="comment">//              return concat (Drv, Urv);// why!!!</span>
+<a name="l01012"></a>01012                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>;<span class="comment">// why!!!</span>
+<a name="l01013"></a>01013         }
+<a name="l01015"></a><a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33">01015</a>         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{
+<a name="l01016"></a>01016                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>;
+<a name="l01017"></a>01017         }
+<a name="l01019"></a><a class="code" href="classbdm_1_1DS.html#ac09878f86907329ac631a3df8755c558">01019</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#ac09878f86907329ac631a3df8755c558" title="access function">_yrv</a>()<span class="keyword"> const </span>{
+<a name="l01020"></a>01020                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>;
+<a name="l01021"></a>01021                 }
+<a name="l01023"></a><a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc">01023</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc" title="set random variables">set_drv</a> (<span class="keyword">const</span>  <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;yrv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;urv) {
+<a name="l01024"></a>01024                     <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a> = yrv;
+<a name="l01025"></a>01025                         <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = concat(yrv,urv);
+<a name="l01026"></a>01026                 <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv;
+<a name="l01027"></a>01027         }
+<a name="l01028"></a>01028 };
+<a name="l01029"></a>01029 
+<a name="l01051"></a><a class="code" href="classbdm_1_1BM.html">01051</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> {
+<a name="l01052"></a>01052 <span class="keyword">protected</span>:
+<a name="l01054"></a><a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed">01054</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;
+<a name="l01056"></a><a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a">01056</a>         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;
+<a name="l01058"></a><a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee">01058</a>         <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>;
+<a name="l01059"></a>01059 <span class="keyword">public</span>:
+<a name="l01062"></a>01062 
+<a name="l01063"></a>01063         <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>() : <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( 0 ), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( true ), <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 4 ), <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 4 ) {
+<a name="l01064"></a>01064                 <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> = -1;<span class="comment">/*empty IDs*/</span>
+<a name="l01065"></a>01065                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> = 0;
+<a name="l01066"></a>01066                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) = 1;  <span class="comment">/*log only mean*/</span>
+<a name="l01067"></a>01067         };
+<a name="l01068"></a>01068         <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &amp;B ) :  <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ( B.<a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( B.<a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( B.<a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ) {}
+<a name="l01071"></a><a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">01071</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">_copy_</a>()<span class="keyword"> const </span>{
+<a name="l01072"></a>01072                 <span class="keywordflow">return</span> NULL;
+<a name="l01073"></a>01073         };
+<a name="l01075"></a>01075 
 <a name="l01078"></a>01078 
-<a name="l01080"></a><a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba">01080</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a>()<span class="keyword"> const </span>{
-<a name="l01081"></a>01081                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
-<a name="l01082"></a>01082                 <span class="keywordflow">return</span> NULL;
-<a name="l01083"></a>01083         };
-<a name="l01085"></a><a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912">01085</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs conditional density of 1-step ahead predictor .">predictor</a>()<span class="keyword"> const </span>{
-<a name="l01086"></a>01086                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
-<a name="l01087"></a>01087                 <span class="keywordflow">return</span> NULL;
-<a name="l01088"></a>01088         };
-<a name="l01090"></a>01090 
-<a name="l01095"></a>01095 
-<a name="l01097"></a><a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb">01097</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>;
-<a name="l01099"></a><a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33">01099</a>         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{
-<a name="l01100"></a>01100                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>;
-<a name="l01101"></a>01101         }
-<a name="l01102"></a>01102 
-<a name="l01104"></a><a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4">01104</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a> ( <span class="keyword">const</span> vec &amp;val ) {
-<a name="l01105"></a>01105                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented!&quot;</span> );
-<a name="l01106"></a>01106         }
-<a name="l01107"></a>01107 
-<a name="l01109"></a>01109 
-<a name="l01110"></a>01110 
-<a name="l01113"></a>01113 
-<a name="l01114"></a>01114         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; _drv()<span class="keyword"> const </span>{
-<a name="l01115"></a>01115                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;
-<a name="l01116"></a>01116         }
-<a name="l01117"></a>01117         <span class="keywordtype">void</span> set_drv ( <span class="keyword">const</span> RV &amp;rv ) {
-<a name="l01118"></a>01118                 <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> = rv;
-<a name="l01119"></a>01119         }
-<a name="l01120"></a>01120         <span class="keywordtype">void</span> set_rv ( <span class="keyword">const</span> RV &amp;rv ) {
-<a name="l01121"></a>01121                 <span class="keyword">const_cast&lt;</span>epdf&amp;<span class="keyword">&gt;</span> ( posterior() ).set_rv ( rv );
-<a name="l01122"></a>01122         }
-<a name="l01123"></a>01123         <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{
-<a name="l01124"></a>01124                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;
-<a name="l01125"></a>01125         }
-<a name="l01126"></a>01126         <span class="keywordtype">void</span> set_evalll ( <span class="keywordtype">bool</span> evl0 ) {
-<a name="l01127"></a>01127                 <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> = evl0;
+<a name="l01082"></a>01082         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> ( <span class="keyword">const</span> vec &amp;dt ) = 0;
+<a name="l01084"></a>01084         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> ( <span class="keyword">const</span> mat &amp;Dt );
+<a name="l01087"></a><a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">01087</a>         <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( <span class="keyword">const</span> vec &amp;dt )<span class="keyword"> const </span>{
+<a name="l01088"></a>01088                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
+<a name="l01089"></a>01089                 <span class="keywordflow">return</span> 0.0;
+<a name="l01090"></a>01090         }
+<a name="l01091"></a>01091 
+<a name="l01093"></a><a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae">01093</a>         vec <a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> ( <span class="keyword">const</span> mat &amp;dt )<span class="keyword"> const </span>{
+<a name="l01094"></a>01094                 vec tmp ( dt.cols() );
+<a name="l01095"></a>01095                 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i &lt; dt.cols(); i++ ) {
+<a name="l01096"></a>01096                         tmp ( i ) = <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( dt.get_col ( i ) );
+<a name="l01097"></a>01097                 }
+<a name="l01098"></a>01098                 <span class="keywordflow">return</span> tmp;
+<a name="l01099"></a>01099         }
+<a name="l01100"></a>01100 
+<a name="l01102"></a><a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba">01102</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a>()<span class="keyword"> const </span>{
+<a name="l01103"></a>01103                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
+<a name="l01104"></a>01104                 <span class="keywordflow">return</span> NULL;
+<a name="l01105"></a>01105         };
+<a name="l01107"></a><a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912">01107</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs conditional density of 1-step ahead predictor .">predictor</a>()<span class="keyword"> const </span>{
+<a name="l01108"></a>01108                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> );
+<a name="l01109"></a>01109                 <span class="keywordflow">return</span> NULL;
+<a name="l01110"></a>01110         };
+<a name="l01112"></a>01112 
+<a name="l01117"></a>01117 
+<a name="l01119"></a><a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb">01119</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>;
+<a name="l01121"></a><a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33">01121</a>         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{
+<a name="l01122"></a>01122                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>;
+<a name="l01123"></a>01123         }
+<a name="l01124"></a>01124 
+<a name="l01126"></a><a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4">01126</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a> ( <span class="keyword">const</span> vec &amp;val ) {
+<a name="l01127"></a>01127                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented!&quot;</span> );
 <a name="l01128"></a>01128         }
-<a name="l01129"></a>01129         <span class="keyword">virtual</span> <span class="keyword">const</span> epdf&amp; posterior() <span class="keyword">const</span> = 0;
+<a name="l01129"></a>01129 
 <a name="l01131"></a>01131 
-<a name="l01134"></a>01134 
-<a name="l01136"></a><a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e">01136</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &amp;quot;logbounds,logll&amp;quot;.">set_options</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;opt ) {
-<a name="l01137"></a>01137                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) = 1;
-<a name="l01138"></a>01138                 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">&quot;logbounds&quot;</span> ) != string::npos ) {
-<a name="l01139"></a>01139                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) = 1;
-<a name="l01140"></a>01140                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) = 1;
-<a name="l01141"></a>01141                 }
-<a name="l01142"></a>01142                 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">&quot;logll&quot;</span> ) != string::npos ) {
-<a name="l01143"></a>01143                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) = 1;
-<a name="l01144"></a>01144                 }
-<a name="l01145"></a>01145         }
-<a name="l01147"></a><a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca">01147</a>         ivec <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>;
-<a name="l01148"></a>01148 
-<a name="l01150"></a><a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207">01150</a>         ivec <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>;
-<a name="l01152"></a><a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827">01152</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L, <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;name = <span class="stringliteral">&quot;&quot;</span> ) {
-<a name="l01153"></a>01153                 <span class="comment">// internal</span>
-<a name="l01154"></a>01154                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r;
-<a name="l01155"></a>01155                 <span class="keywordflow">if</span> ( posterior().isnamed() ) {
-<a name="l01156"></a>01156                         r = posterior().<a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();
-<a name="l01157"></a>01157                 } <span class="keywordflow">else</span> {
-<a name="l01158"></a>01158                         r = <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">&quot;est&quot;</span>, posterior().dimension() );
-<a name="l01159"></a>01159                 };
-<a name="l01160"></a>01160 
-<a name="l01161"></a>01161                 <span class="comment">// Add mean value</span>
-<a name="l01162"></a>01162                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">&quot;mean_&quot;</span> );
-<a name="l01163"></a>01163                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">&quot;lb_&quot;</span> );
-<a name="l01164"></a>01164                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">&quot;ub_&quot;</span> );
-<a name="l01165"></a>01165                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">&quot;ll&quot;</span>, 1 ), name );    <span class="comment">//TODO: &quot;local&quot; RV</span>
-<a name="l01166"></a>01166         }
-<a name="l01167"></a>01167         <span class="keyword">virtual</span> <span class="keywordtype">void</span> logit ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
-<a name="l01168"></a>01168                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ), posterior().mean() );
-<a name="l01169"></a>01169                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) || <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) ) {  <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span>
-<a name="l01170"></a>01170                         vec ub, lb;
-<a name="l01171"></a>01171                         posterior().<a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( lb, ub );
-<a name="l01172"></a>01172                         L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ), lb );
-<a name="l01173"></a>01173                         L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ), ub );
-<a name="l01174"></a>01174                 }
-<a name="l01175"></a>01175                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) ) L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> );
-<a name="l01176"></a>01176         }
-<a name="l01178"></a><a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de">01178</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de" title="This method arrange instance properties according the data stored in the Setting...">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ) {
-<a name="l01179"></a>01179                 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr&lt;RV&gt;</a> r = UI::build&lt;RV&gt; ( <span class="keyword">set</span>, <span class="stringliteral">&quot;drv&quot;</span>, UI::optional );
-<a name="l01180"></a>01180                 <span class="keywordflow">if</span> ( r ) {
-<a name="l01181"></a>01181                         set_drv ( *r );
-<a name="l01182"></a>01182                 }
-<a name="l01183"></a>01183                 <span class="keywordtype">string</span> opt;
-<a name="l01184"></a>01184                 <span class="keywordflow">if</span> ( !<a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a> ( opt, <span class="keyword">set</span>, <span class="stringliteral">&quot;options&quot;</span>, UI::optional ) ) {
-<a name="l01185"></a>01185                         <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &amp;quot;logbounds,logll&amp;quot;.">set_options</a> ( opt );
-<a name="l01186"></a>01186                 }
-<a name="l01187"></a>01187         }
-<a name="l01188"></a>01188 
-<a name="l01189"></a>01189 };
-<a name="l01190"></a>01190 
-<a name="l01191"></a>01191 <span class="keyword">typedef</span> Array&lt;shared_ptr&lt;epdf&gt; &gt; epdf_array;
-<a name="l01192"></a>01192 
-<a name="l01193"></a>01193 <span class="keyword">typedef</span> Array&lt;shared_ptr&lt;mpdf&gt; &gt; mpdf_array;
-<a name="l01194"></a>01194 
-<a name="l01195"></a>01195 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
-<a name="l01196"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930">01196</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">mpdf_internal&lt;EPDF&gt;::samplecond</a> ( <span class="keyword">const</span> vec &amp;cond ) {
-<a name="l01197"></a>01197         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
-<a name="l01198"></a>01198         vec temp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample();
-<a name="l01199"></a>01199         <span class="keywordflow">return</span> temp;
-<a name="l01200"></a>01200 }
-<a name="l01201"></a>01201 
-<a name="l01202"></a>01202 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
-<a name="l01203"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823">01203</a> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">mpdf_internal&lt;EPDF&gt;::samplecond_m</a> ( <span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N ) {
-<a name="l01204"></a>01204         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
-<a name="l01205"></a>01205         mat temp ( dimension(), N );
-<a name="l01206"></a>01206         vec smp ( dimension() );
-<a name="l01207"></a>01207         <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i &lt; N; i++ ) {
-<a name="l01208"></a>01208                 smp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample();
-<a name="l01209"></a>01209                 temp.set_col ( i, smp );
-<a name="l01210"></a>01210         }
-<a name="l01211"></a>01211 
-<a name="l01212"></a>01212         <span class="keywordflow">return</span> temp;
-<a name="l01213"></a>01213 }
+<a name="l01132"></a>01132 
+<a name="l01135"></a>01135 
+<a name="l01136"></a>01136         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; _drv()<span class="keyword"> const </span>{
+<a name="l01137"></a>01137                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>;
+<a name="l01138"></a>01138         }
+<a name="l01139"></a>01139         <span class="keywordtype">void</span> set_drv ( <span class="keyword">const</span> RV &amp;rv ) {
+<a name="l01140"></a>01140                 <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> = rv;
+<a name="l01141"></a>01141         }
+<a name="l01142"></a>01142         <span class="keywordtype">void</span> set_rv ( <span class="keyword">const</span> RV &amp;rv ) {
+<a name="l01143"></a>01143                 <span class="keyword">const_cast&lt;</span>epdf&amp;<span class="keyword">&gt;</span> ( posterior() ).set_rv ( rv );
+<a name="l01144"></a>01144         }
+<a name="l01145"></a>01145         <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{
+<a name="l01146"></a>01146                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>;
+<a name="l01147"></a>01147         }
+<a name="l01148"></a>01148         <span class="keywordtype">void</span> set_evalll ( <span class="keywordtype">bool</span> evl0 ) {
+<a name="l01149"></a>01149                 <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> = evl0;
+<a name="l01150"></a>01150         }
+<a name="l01151"></a>01151         <span class="keyword">virtual</span> <span class="keyword">const</span> epdf&amp; posterior() <span class="keyword">const</span> = 0;
+<a name="l01153"></a>01153 
+<a name="l01156"></a>01156 
+<a name="l01158"></a><a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e">01158</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &amp;quot;logbounds,logll&amp;quot;.">set_options</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;opt ) {
+<a name="l01159"></a>01159                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) = 1;
+<a name="l01160"></a>01160                 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">&quot;logbounds&quot;</span> ) != string::npos ) {
+<a name="l01161"></a>01161                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) = 1;
+<a name="l01162"></a>01162                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) = 1;
+<a name="l01163"></a>01163                 }
+<a name="l01164"></a>01164                 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">&quot;logll&quot;</span> ) != string::npos ) {
+<a name="l01165"></a>01165                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) = 1;
+<a name="l01166"></a>01166                 }
+<a name="l01167"></a>01167         }
+<a name="l01169"></a><a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca">01169</a>         ivec <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>;
+<a name="l01170"></a>01170 
+<a name="l01172"></a><a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207">01172</a>         ivec <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>;
+<a name="l01174"></a><a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827">01174</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L, <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;name = <span class="stringliteral">&quot;&quot;</span> ) {
+<a name="l01175"></a>01175                 <span class="comment">// internal</span>
+<a name="l01176"></a>01176                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r;
+<a name="l01177"></a>01177                 <span class="keywordflow">if</span> ( posterior().isnamed() ) {
+<a name="l01178"></a>01178                         r = posterior().<a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>();
+<a name="l01179"></a>01179                 } <span class="keywordflow">else</span> {
+<a name="l01180"></a>01180                         r = <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">&quot;est&quot;</span>, posterior().dimension() );
+<a name="l01181"></a>01181                 };
+<a name="l01182"></a>01182 
+<a name="l01183"></a>01183                 <span class="comment">// Add mean value</span>
+<a name="l01184"></a>01184                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">&quot;mean_&quot;</span> );
+<a name="l01185"></a>01185                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">&quot;lb_&quot;</span> );
+<a name="l01186"></a>01186                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">&quot;ub_&quot;</span> );
+<a name="l01187"></a>01187                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">&quot;ll&quot;</span>, 1 ), name );    <span class="comment">//TODO: &quot;local&quot; RV</span>
+<a name="l01188"></a>01188         }
+<a name="l01189"></a>01189         <span class="keyword">virtual</span> <span class="keywordtype">void</span> logit ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
+<a name="l01190"></a>01190                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ), posterior().mean() );
+<a name="l01191"></a>01191                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) || <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) ) {  <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span>
+<a name="l01192"></a>01192                         vec ub, lb;
+<a name="l01193"></a>01193                         posterior().<a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( lb, ub );
+<a name="l01194"></a>01194                         L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ), lb );
+<a name="l01195"></a>01195                         L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ), ub );
+<a name="l01196"></a>01196                 }
+<a name="l01197"></a>01197                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) ) L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> );
+<a name="l01198"></a>01198         }
+<a name="l01200"></a><a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de">01200</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de" title="This method arrange instance properties according the data stored in the Setting...">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ) {
+<a name="l01201"></a>01201                 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr&lt;RV&gt;</a> r = UI::build&lt;RV&gt; ( <span class="keyword">set</span>, <span class="stringliteral">&quot;drv&quot;</span>, UI::optional );
+<a name="l01202"></a>01202                 <span class="keywordflow">if</span> ( r ) {
+<a name="l01203"></a>01203                         set_drv ( *r );
+<a name="l01204"></a>01204                 }
+<a name="l01205"></a>01205                 <span class="keywordtype">string</span> opt;
+<a name="l01206"></a>01206                 <span class="keywordflow">if</span> ( !<a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a> ( opt, <span class="keyword">set</span>, <span class="stringliteral">&quot;options&quot;</span>, UI::optional ) ) {
+<a name="l01207"></a>01207                         <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &amp;quot;logbounds,logll&amp;quot;.">set_options</a> ( opt );
+<a name="l01208"></a>01208                 }
+<a name="l01209"></a>01209         }
+<a name="l01210"></a>01210 
+<a name="l01211"></a>01211 };
+<a name="l01212"></a>01212 
+<a name="l01213"></a>01213 <span class="keyword">typedef</span> Array&lt;shared_ptr&lt;epdf&gt; &gt; epdf_array;
 <a name="l01214"></a>01214 
-<a name="l01215"></a>01215 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
-<a name="l01216"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948">01216</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">mpdf_internal&lt;EPDF&gt;::evallogcond</a> ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;cond ) {
-<a name="l01217"></a>01217         <span class="keywordtype">double</span> tmp;
-<a name="l01218"></a>01218         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
-<a name="l01219"></a>01219         tmp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog ( dt );
-<a name="l01220"></a>01220         <span class="keywordflow">return</span> tmp;
-<a name="l01221"></a>01221 }
-<a name="l01222"></a>01222 
-<a name="l01223"></a>01223 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
-<a name="l01224"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c">01224</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal&lt;EPDF&gt;::evallogcond_m</a> ( <span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) {
-<a name="l01225"></a>01225         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
-<a name="l01226"></a>01226         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m ( Dt );
-<a name="l01227"></a>01227 }
-<a name="l01228"></a>01228 
-<a name="l01229"></a>01229 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
-<a name="l01230"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae82db07ce8af02f29cfd81e014edb3db">01230</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal&lt;EPDF&gt;::evallogcond_m</a> ( <span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) {
-<a name="l01231"></a>01231         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
-<a name="l01232"></a>01232         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m ( Dt );
-<a name="l01233"></a>01233 }
-<a name="l01234"></a>01234 
-<a name="l01235"></a>01235 }; <span class="comment">//namespace</span>
-<a name="l01236"></a>01236 <span class="preprocessor">#endif // BDMBASE_H</span>
+<a name="l01215"></a>01215 <span class="keyword">typedef</span> Array&lt;shared_ptr&lt;mpdf&gt; &gt; mpdf_array;
+<a name="l01216"></a>01216 
+<a name="l01217"></a>01217 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
+<a name="l01218"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930">01218</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">mpdf_internal&lt;EPDF&gt;::samplecond</a> ( <span class="keyword">const</span> vec &amp;cond ) {
+<a name="l01219"></a>01219         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
+<a name="l01220"></a>01220         vec temp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample();
+<a name="l01221"></a>01221         <span class="keywordflow">return</span> temp;
+<a name="l01222"></a>01222 }
+<a name="l01223"></a>01223 
+<a name="l01224"></a>01224 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
+<a name="l01225"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823">01225</a> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">mpdf_internal&lt;EPDF&gt;::samplecond_m</a> ( <span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N ) {
+<a name="l01226"></a>01226         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
+<a name="l01227"></a>01227         mat temp ( dimension(), N );
+<a name="l01228"></a>01228         vec smp ( dimension() );
+<a name="l01229"></a>01229         <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i &lt; N; i++ ) {
+<a name="l01230"></a>01230                 smp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample();
+<a name="l01231"></a>01231                 temp.set_col ( i, smp );
+<a name="l01232"></a>01232         }
+<a name="l01233"></a>01233 
+<a name="l01234"></a>01234         <span class="keywordflow">return</span> temp;
+<a name="l01235"></a>01235 }
+<a name="l01236"></a>01236 
+<a name="l01237"></a>01237 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
+<a name="l01238"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948">01238</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">mpdf_internal&lt;EPDF&gt;::evallogcond</a> ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;cond ) {
+<a name="l01239"></a>01239         <span class="keywordtype">double</span> tmp;
+<a name="l01240"></a>01240         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
+<a name="l01241"></a>01241         tmp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog ( dt );
+<a name="l01242"></a>01242         <span class="keywordflow">return</span> tmp;
+<a name="l01243"></a>01243 }
+<a name="l01244"></a>01244 
+<a name="l01245"></a>01245 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
+<a name="l01246"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c">01246</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal&lt;EPDF&gt;::evallogcond_m</a> ( <span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) {
+<a name="l01247"></a>01247         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
+<a name="l01248"></a>01248         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m ( Dt );
+<a name="l01249"></a>01249 }
+<a name="l01250"></a>01250 
+<a name="l01251"></a>01251 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt;
+<a name="l01252"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae82db07ce8af02f29cfd81e014edb3db">01252</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal&lt;EPDF&gt;::evallogcond_m</a> ( <span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) {
+<a name="l01253"></a>01253         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond );
+<a name="l01254"></a>01254         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m ( Dt );
+<a name="l01255"></a>01255 }
+<a name="l01256"></a>01256 
+<a name="l01257"></a>01257 }; <span class="comment">//namespace</span>
+<a name="l01258"></a>01258 <span class="preprocessor">#endif // BDMBASE_H</span>
 </pre></div></div>
-<hr size="1"/><address style="text-align: right;"><small>Generated on Tue Sep 8 22:11:32 2009 for mixpp by&nbsp;
+<hr size="1"/><address style="text-align: right;"><small>Generated on Sun Sep 13 22:40:39 2009 for mixpp by&nbsp;
 <a href="http://www.doxygen.org/index.html">
 <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>