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    53<title>mixpp: Class List</title> 
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    7370  <tr><td class="indexkey"><a class="el" href="classbdm_1_1ArxDS.html">bdm::ArxDS</a></td><td class="indexvalue">Generator of <a class="el" href="classbdm_1_1ARX.html" title="Linear Autoregressive model with Gaussian noise.">ARX</a> data </td></tr> 
    7471  <tr><td class="indexkey"><a class="el" href="classbdm_1_1ARXfrg.html">bdm::ARXfrg</a></td><td class="indexvalue"></td></tr> 
    75   <tr><td class="indexkey"><a class="el" href="classbdm_1_1bilinfn.html">bdm::bilinfn</a></td><td class="indexvalue">Class representing function <img class="formulaInl" alt="$f(x,u) = Ax+Bu$" src="form_51.png"/> </td></tr> 
     72  <tr><td class="indexkey"><a class="el" href="classbdm_1_1bilinfn.html">bdm::bilinfn</a></td><td class="indexvalue">Class representing function <img class="formulaInl" alt="$f(x,u) = Ax+Bu$" src="form_51.png"> </td></tr> 
    7673  <tr><td class="indexkey"><a class="el" href="classbdm_1_1BM.html">bdm::BM</a></td><td class="indexvalue">Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities </td></tr> 
    7774  <tr><td class="indexkey"><a class="el" href="classbdm_1_1BMEF.html">bdm::BMEF</a></td><td class="indexvalue">Estimator for Exponential family </td></tr> 
    7875  <tr><td class="indexkey"><a class="el" href="classbdm_1_1chmat.html">bdm::chmat</a></td><td class="indexvalue">Symmetric matrix stored in square <a class="el" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> decomposition using upper cholesky </td></tr> 
    79   <tr><td class="indexkey"><a class="el" href="classbdm_1_1constfn.html">bdm::constfn</a></td><td class="indexvalue">Class representing function <img class="formulaInl" alt="$f(x) = a$" src="form_48.png"/>, here <code>rv</code> is empty </td></tr> 
     76  <tr><td class="indexkey"><a class="el" href="classbdm_1_1constfn.html">bdm::constfn</a></td><td class="indexvalue">Class representing function <img class="formulaInl" alt="$f(x) = a$" src="form_48.png">, here <code>rv</code> is empty </td></tr> 
    8077  <tr><td class="indexkey"><a class="el" href="classbdm_1_1Controller.html">bdm::Controller</a></td><td class="indexvalue"></td></tr> 
    81   <tr><td class="indexkey"><a class="el" href="classbdm_1_1CsvFileDS.html">bdm::CsvFileDS</a></td><td class="indexvalue">CSV file data storage The constructor creates <code>Data</code> matrix from the records in a CSV file <code>fname</code>. The orientation can be of two types: 1. <code>BY_COL</code> which is default - the data are stored in columns; one column per time <img class="formulaInl" alt="$t$" src="form_22.png"/>, one row per data item. 2. <code>BY_ROW</code> if the data are stored the classical CSV style. Then each column stores the values for data item, for ex. <img class="formulaInl" alt="$[y_{t} y_{t-1} ...]$" src="form_23.png"/>, one row for each discrete time instant </td></tr> 
     78  <tr><td class="indexkey"><a class="el" href="classbdm_1_1CsvFileDS.html">bdm::CsvFileDS</a></td><td class="indexvalue">CSV file data storage The constructor creates <code>Data</code> matrix from the records in a CSV file <code>fname</code>. The orientation can be of two types: 1. <code>BY_COL</code> which is default - the data are stored in columns; one column per time <img class="formulaInl" alt="$t$" src="form_22.png">, one row per data item. 2. <code>BY_ROW</code> if the data are stored the classical CSV style. Then each column stores the values for data item, for ex. <img class="formulaInl" alt="$[y_{t} y_{t-1} ...]$" src="form_23.png">, one row for each discrete time instant </td></tr> 
    8279  <tr><td class="indexkey"><a class="el" href="classbdm_1_1datalink.html">bdm::datalink</a></td><td class="indexvalue">DataLink is a connection between two data vectors Up and Down </td></tr> 
    8380  <tr><td class="indexkey"><a class="el" href="classbdm_1_1datalink__2to1__buffered.html">bdm::datalink_2to1_buffered</a></td><td class="indexvalue">Buffered <a class="el" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> from 2 vectors to 1 </td></tr> 
    84   <tr><td class="indexkey"><a class="el" href="classbdm_1_1datalink__buffered.html">bdm::datalink_buffered</a></td><td class="indexvalue">Datalink that buffers delayed values - do not forget to call <a class="el" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f" title="push current data to history">step()</a> </td></tr> 
     81  <tr><td class="indexkey"><a class="el" href="classbdm_1_1datalink__buffered.html">bdm::datalink_buffered</a></td><td class="indexvalue">Datalink that buffers delayed values - do not forget to call <a class="el" href="classbdm_1_1datalink__buffered.html#f137706c55891ba8a8aecc52ea96865f" title="push current data to history">step()</a> </td></tr> 
    8582  <tr><td class="indexkey"><a class="el" href="classbdm_1_1datalink__m2e.html">bdm::datalink_m2e</a></td><td class="indexvalue">Data link with a condition </td></tr> 
    8683  <tr><td class="indexkey"><a class="el" href="classbdm_1_1datalink__m2m.html">bdm::datalink_m2m</a></td><td class="indexvalue">DataLink is a connection between <a class="el" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> and its superordinate (Up) This class links </td></tr> 
    8784  <tr><td class="indexkey"><a class="el" href="classbdm_1_1datalink__part.html">bdm::datalink_part</a></td><td class="indexvalue"></td></tr> 
    8885  <tr><td class="indexkey"><a class="el" href="classbdm_1_1Designer.html">bdm::Designer</a></td><td class="indexvalue">Low-level class for design of control strategy </td></tr> 
    89   <tr><td class="indexkey"><a class="el" href="classbdm_1_1diffbifn.html">bdm::diffbifn</a></td><td class="indexvalue">Class representing a differentiable function of two variables <img class="formulaInl" alt="$f(x,u)$" src="form_50.png"/> </td></tr> 
    90   <tr><td class="indexkey"><a class="el" href="structDIR.html">DIR</a></td><td class="indexvalue"></td></tr> 
    91   <tr><td class="indexkey"><a class="el" href="structdirent.html">dirent</a></td><td class="indexvalue"></td></tr> 
     86  <tr><td class="indexkey"><a class="el" href="classbdm_1_1diffbifn.html">bdm::diffbifn</a></td><td class="indexvalue">Class representing a differentiable function of two variables <img class="formulaInl" alt="$f(x,u)$" src="form_50.png"> </td></tr> 
    9287  <tr><td class="indexkey"><a class="el" href="classbdm_1_1dirfilelog.html">bdm::dirfilelog</a></td><td class="indexvalue">Logging into dirfile with buffer in memory </td></tr> 
    9388  <tr><td class="indexkey"><a class="el" href="classbdm_1_1discrete__support.html">bdm::discrete_support</a></td><td class="indexvalue">Discrete support with stored support points </td></tr> 
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    117112  <tr><td class="indexkey"><a class="el" href="classbdm_1_1eWishartCh.html">bdm::eWishartCh</a></td><td class="indexvalue"></td></tr> 
    118113  <tr><td class="indexkey"><a class="el" href="classbdm_1_1FileDS.html">bdm::FileDS</a></td><td class="indexvalue"></td></tr> 
    119   <tr><td class="indexkey"><a class="el" href="classbdm_1_1fnc.html">bdm::fnc</a></td><td class="indexvalue">Class representing function <img class="formulaInl" alt="$f(x)$" src="form_0.png"/> of variable <img class="formulaInl" alt="$x$" src="form_1.png"/> represented by <code>rv</code> </td></tr> 
     114  <tr><td class="indexkey"><a class="el" href="classbdm_1_1fnc.html">bdm::fnc</a></td><td class="indexvalue">Class representing function <img class="formulaInl" alt="$f(x)$" src="form_0.png"> of variable <img class="formulaInl" alt="$x$" src="form_1.png"> represented by <code>rv</code> </td></tr> 
    120115  <tr><td class="indexkey"><a class="el" href="classbdm_1_1fsqmat.html">bdm::fsqmat</a></td><td class="indexvalue">Fake <a class="el" href="classbdm_1_1sqmat.html" title="Abstract class for representation of double symmetric matrices in square-root form...">sqmat</a>. This class maps <a class="el" href="classbdm_1_1sqmat.html" title="Abstract class for representation of double symmetric matrices in square-root form...">sqmat</a> operations to operations on full matrix </td></tr> 
    121   <tr><td class="indexkey"><a class="el" href="classbdm_1_1grid__fnc.html">bdm::grid_fnc</a></td><td class="indexvalue"></td></tr> 
     116  <tr><td class="indexkey"><a class="el" href="classitpp_1_1Gamma__RNG.html">itpp::Gamma_RNG</a></td><td class="indexvalue">Gamma distribution </td></tr> 
    122117  <tr><td class="indexkey"><a class="el" href="classbdm_1_1ITppFileDS.html">bdm::ITppFileDS</a></td><td class="indexvalue">Read Data Matrix from an IT file </td></tr> 
    123118  <tr><td class="indexkey"><a class="el" href="classbdm_1_1Kalman.html">bdm::Kalman&lt; sq_T &gt;</a></td><td class="indexvalue">Common abstract base for <a class="el" href="classbdm_1_1Kalman.html" title="Common abstract base for Kalman filters.">Kalman</a> filters </td></tr> 
    … …  
    125120  <tr><td class="indexkey"><a class="el" href="classbdm_1_1KalmanFull.html">bdm::KalmanFull</a></td><td class="indexvalue">Basic <a class="el" href="classbdm_1_1Kalman.html" title="Common abstract base for Kalman filters.">Kalman</a> filter with full matrices </td></tr> 
    126121  <tr><td class="indexkey"><a class="el" href="classbdm_1_1ldmat.html">bdm::ldmat</a></td><td class="indexvalue">Matrix stored in LD form, (commonly known as UD) </td></tr> 
    127   <tr><td class="indexkey"><a class="el" href="classbdm_1_1linfn.html">bdm::linfn</a></td><td class="indexvalue">Class representing function <img class="formulaInl" alt="$f(x) = Ax+B$" src="form_49.png"/> </td></tr> 
     122  <tr><td class="indexkey"><a class="el" href="classbdm_1_1linfn.html">bdm::linfn</a></td><td class="indexvalue">Class representing function <img class="formulaInl" alt="$f(x) = Ax+B$" src="form_49.png"> </td></tr> 
    128123  <tr><td class="indexkey"><a class="el" href="classbdm_1_1logger.html">bdm::logger</a></td><td class="indexvalue">Class for storing results (and semi-results) of an experiment </td></tr> 
    129124  <tr><td class="indexkey"><a class="el" href="classbdm_1_1LQG.html">bdm::LQG</a></td><td class="indexvalue"></td></tr> 
    130   <tr><td class="indexkey"><a class="el" href="classbdm_1_1LQG__ARX.html">bdm::LQG_ARX</a></td><td class="indexvalue"><a class="el" href="classbdm_1_1Controller.html">Controller</a> using <a class="el" href="classbdm_1_1ARX.html" title="Linear Autoregressive model with Gaussian noise.">ARX</a> model for estimation and <a class="el" href="classbdm_1_1LQG.html">LQG</a> designer for control </td></tr> 
    131125  <tr><td class="indexkey"><a class="el" href="classbdm_1_1mDirich.html">bdm::mDirich</a></td><td class="indexvalue"></td></tr> 
    132126  <tr><td class="indexkey"><a class="el" href="classbdm_1_1MemDS.html">bdm::MemDS</a></td><td class="indexvalue">Memory storage of off-line data column-wise </td></tr> 
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    135129  <tr><td class="indexkey"><a class="el" href="classbdm_1_1merger__base.html">bdm::merger_base</a></td><td class="indexvalue">Base class for general combination of pdfs on discrete support </td></tr> 
    136130  <tr><td class="indexkey"><a class="el" href="classbdm_1_1merger__mix.html">bdm::merger_mix</a></td><td class="indexvalue">Merger using importance sampling with mixture proposal density </td></tr> 
    137   <tr><td class="indexkey"><a class="el" href="classbdm_1_1mexBM.html">bdm::mexBM</a></td><td class="indexvalue"></td></tr> 
    138   <tr><td class="indexkey"><a class="el" href="classbdm_1_1mexDS.html">bdm::mexDS</a></td><td class="indexvalue">Matlab wrapper for <a class="el" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> mapping functions <a class="el" href="classbdm_1_1mexDS.html#a0b45e92047ef1676ad19a42902956c8b" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step()</a> to a matlab function </td></tr> 
    139   <tr><td class="indexkey"><a class="el" href="classbdm_1_1mexEpdf.html">bdm::mexEpdf</a></td><td class="indexvalue"></td></tr> 
     131  <tr><td class="indexkey"><a class="el" href="classbdm_1_1mexDS.html">bdm::mexDS</a></td><td class="indexvalue">Matlab wrapper for <a class="el" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> mapping functions <a class="el" href="classbdm_1_1mexDS.html#0b45e92047ef1676ad19a42902956c8b" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step()</a> to a matlab function </td></tr> 
    140132  <tr><td class="indexkey"><a class="el" href="classbdm_1_1mexlog.html">bdm::mexlog</a></td><td class="indexvalue">Logger storing results into an mxArray </td></tr> 
    141133  <tr><td class="indexkey"><a class="el" href="classbdm_1_1mgamma.html">bdm::mgamma</a></td><td class="indexvalue">Gamma random walk </td></tr> 
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    149141  <tr><td class="indexkey"><a class="el" href="classbdm_1_1mlstudent.html">bdm::mlstudent</a></td><td class="indexvalue"></td></tr> 
    150142  <tr><td class="indexkey"><a class="el" href="classbdm_1_1mmix.html">bdm::mmix</a></td><td class="indexvalue">Mixture of mpdfs with constant weights, all mpdfs are of equal <a class="el" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> and RVC </td></tr> 
    151   <tr><td class="indexkey"><a class="el" href="classbdm_1_1mpdf.html">bdm::mpdf</a></td><td class="indexvalue">Conditional probability density, e.g. modeling <img class="formulaInl" alt="$ f( x | y) $" src="form_2.png"/>, where <img class="formulaInl" alt="$ x $" src="form_3.png"/> is random variable, <code>rv</code>, and <img class="formulaInl" alt="$ y $" src="form_4.png"/> is conditioning variable, <code>rvc</code> </td></tr> 
     143  <tr><td class="indexkey"><a class="el" href="classbdm_1_1mpdf.html">bdm::mpdf</a></td><td class="indexvalue">Conditional probability density, e.g. modeling <img class="formulaInl" alt="$ f( x | y) $" src="form_2.png">, where <img class="formulaInl" alt="$ x $" src="form_3.png"> is random variable, <code>rv</code>, and <img class="formulaInl" alt="$ y $" src="form_4.png"> is conditioning variable, <code>rvc</code> </td></tr> 
    152144  <tr><td class="indexkey"><a class="el" href="classbdm_1_1mpdf__internal.html">bdm::mpdf_internal&lt; EPDF &gt;</a></td><td class="indexvalue">Mpdf with internal <a class="el" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> that is modified by function <code>condition</code> </td></tr> 
    153145  <tr><td class="indexkey"><a class="el" href="classbdm_1_1MpdfDS.html">bdm::MpdfDS</a></td><td class="indexvalue">Simulate data from conditional density Still having only one density but allowing conditioning on either input or delayed values </td></tr> 
    154146  <tr><td class="indexkey"><a class="el" href="classbdm_1_1MPF.html">bdm::MPF</a></td><td class="indexvalue">Marginalized Particle filter </td></tr> 
    155147  <tr><td class="indexkey"><a class="el" href="classbdm_1_1mprod.html">bdm::mprod</a></td><td class="indexvalue">Chain rule decomposition of <a class="el" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a> </td></tr> 
    156   <tr><td class="indexkey"><a class="el" href="classbdm_1_1mratio.html">bdm::mratio</a></td><td class="indexvalue">Class representing ratio of two densities which arise e.g. by applying the Bayes rule. It represents density in the form: </p> 
    157 <p class="formulaDsp"> 
    158 <img class="formulaDsp" alt="\[ f(rv|rvc) = \frac{f(rv,rvc)}{f(rvc)} \]" src="form_70.png"/> 
    159 </p> 
    160 <p> where <img class="formulaInl" alt="$ f(rvc) = \int f(rv,rvc) d\ rv $" src="form_71.png"/> </td></tr> 
     148  <tr><td class="indexkey"><a class="el" href="classbdm_1_1mratio.html">bdm::mratio</a></td><td class="indexvalue">Class representing ratio of two densities which arise e.g. by applying the Bayes rule. It represents density in the form: <p class="formulaDsp"> 
     149<img class="formulaDsp" alt="\[ f(rv|rvc) = \frac{f(rv,rvc)}{f(rvc)} \]" src="form_70.png"> 
     150<p> 
     151 where <img class="formulaInl" alt="$ f(rvc) = \int f(rv,rvc) d\ rv $" src="form_71.png"> </td></tr> 
    161152  <tr><td class="indexkey"><a class="el" href="classbdm_1_1multiBM.html">bdm::multiBM</a></td><td class="indexvalue">Estimator for Multinomial density </td></tr> 
    162153  <tr><td class="indexkey"><a class="el" href="classbdm_1_1MultiModel.html">bdm::MultiModel</a></td><td class="indexvalue">(Switching) Multiple Model The model runs several models in parallel and evaluates thier weights (fittness) </td></tr> 
    163154  <tr><td class="indexkey"><a class="el" href="classbdm_1_1mxArrayDS.html">bdm::mxArrayDS</a></td><td class="indexvalue">Memory storage of off-line data column-wise </td></tr> 
    164155  <tr><td class="indexkey"><a class="el" href="classbdm_1_1object__ptr.html">bdm::object_ptr&lt; T &gt;</a></td><td class="indexvalue">A wrapper of <a class="el" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr</a> which is never empty </td></tr> 
    165   <tr><td class="indexkey"><a class="el" href="classbdm_1_1Participant.html">bdm::Participant</a></td><td class="indexvalue">Basic <a class="el" href="classbdm_1_1Participant.html" title="Basic Participant.">Participant</a> </td></tr> 
    166156  <tr><td class="indexkey"><a class="el" href="classbdm_1_1ParticularUI.html">bdm::ParticularUI&lt; T &gt;</a></td><td class="indexvalue"></td></tr> 
    167157  <tr><td class="indexkey"><a class="el" href="classbdm_1_1PF.html">bdm::PF</a></td><td class="indexvalue">Trivial particle filter with proposal density equal to parameter evolution model </td></tr> 
    168   <tr><td class="indexkey"><a class="el" href="classitpp_1_1RandunStorage.html">itpp::RandunStorage</a></td><td class="indexvalue"></td></tr> 
    169158  <tr><td class="indexkey"><a class="el" href="classbdm_1_1rectangular__support.html">bdm::rectangular_support</a></td><td class="indexvalue"></td></tr> 
    170159  <tr><td class="indexkey"><a class="el" href="classbdm_1_1root.html">bdm::root</a></td><td class="indexvalue">Root class of BDM objects </td></tr> 
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    175164  <tr><td class="indexkey"><a class="el" href="classbdm_1_1sqmat.html">bdm::sqmat</a></td><td class="indexvalue">Abstract class for representation of double symmetric matrices in square-root form </td></tr> 
    176165  <tr><td class="indexkey"><a class="el" href="classbdm_1_1StateCanonical.html">bdm::StateCanonical</a></td><td class="indexvalue">Conversion of outer <a class="el" href="classbdm_1_1ARX.html" title="Linear Autoregressive model with Gaussian noise.">ARX</a> model (<a class="el" href="classbdm_1_1mlnorm.html" title="Normal distributed linear function with linear function of mean value;.">mlnorm</a>) to state space model </td></tr> 
    177   <tr><td class="indexkey"><a class="el" href="classbdm_1_1stateDS.html">bdm::stateDS</a></td><td class="indexvalue"></td></tr> 
    178166  <tr><td class="indexkey"><a class="el" href="classbdm_1_1StateSpace.html">bdm::StateSpace&lt; sq_T &gt;</a></td><td class="indexvalue">Basic elements of linear state-space model </td></tr> 
    179167  <tr><td class="indexkey"><a class="el" href="classbdm_1_1stdlog.html">bdm::stdlog</a></td><td class="indexvalue">Simple <a class="el" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> used for debugging All data records are written out to std from where they could be send to file </td></tr> 
    180168  <tr><td class="indexkey"><a class="el" href="classbdm_1_1str.html">bdm::str</a></td><td class="indexvalue">Structure of <a class="el" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>, i.e. RVs expanded into a flat list of IDs, used for debugging </td></tr> 
    181   <tr><td class="indexkey"><a class="el" href="structbdm_1_1str__aux.html">bdm::str_aux</a></td><td class="indexvalue"></td></tr> 
    182169  <tr><td class="indexkey"><a class="el" href="classbdm_1_1UI.html">bdm::UI</a></td><td class="indexvalue"><a class="el" href="classbdm_1_1UI.html" title="UI is an abstract class which collects all the auxiliary functions useful to prepare...">UI</a> is an abstract class which collects all the auxiliary functions useful to prepare some concrete user-infos </td></tr> 
    183170  <tr><td class="indexkey"><a class="el" href="classbdm_1_1UIClassException.html">bdm::UIClassException</a></td><td class="indexvalue"></td></tr> 
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    189176</table> 
    190177</div> 
    191 <hr size="1"/><address style="text-align: right;"><small>Generated on Sun Sep 27 00:49:05 2009 for mixpp by&nbsp; 
     178<hr size="1"><address style="text-align: right;"><small>Generated on Wed Oct 7 17:34:45 2009 for mixpp by&nbsp; 
    192179<a href="http://www.doxygen.org/index.html"> 
    193 <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address> 
     180<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.5.9 </small></address> 
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