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  • library/doc/html/bdmbase_8h_source.html

    r656 r661  
    207207<a name="l00238"></a>00238                 <span class="keywordflow">return</span> tmp; 
    208208<a name="l00239"></a>00239         } 
    209 <a name="l00241"></a><a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e">00241</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e" title="return rvs with expanded delayes and sorted in the order of:">expand_delayes</a>()<span class="keyword"> const </span>{ 
     209<a name="l00241"></a><a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e">00241</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e" title="return rvs with expanded delayes and sorted in the order of: ">expand_delayes</a>()<span class="keyword"> const </span>{ 
    210210<a name="l00242"></a>00242                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rvt = this-&gt;remove_time(); <span class="comment">//rv at t=0</span> 
    211211<a name="l00243"></a>00243                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> tmp = rvt; 
    … …  
    220220<a name="l00255"></a>00255  
    221221<a name="l00257"></a>00257         <a class="code" href="classbdm_1_1str.html" title="Structure of RV, i.e. RVs expanded into a flat list of IDs, used for debugging.">str</a> <a class="code" href="classbdm_1_1RV.html#a8bdd7f4072749c7cc864b78a418ca388" title="generate str from rv, by expanding sizes">tostr</a>() <span class="keyword">const</span>; 
    222 <a name="l00260"></a>00260         ivec <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;crv ) <span class="keyword">const</span>; 
     222<a name="l00260"></a>00260         ivec <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;crv ) <span class="keyword">const</span>; 
    223223<a name="l00262"></a>00262         ivec <a class="code" href="classbdm_1_1RV.html#a0c6e3a1c54a612d2ea390c841aa5eb6f" title="same as dataind but this time crv should not be complete supperset of rv.">dataind_part</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;crv ) <span class="keyword">const</span>; 
    224 <a name="l00265"></a>00265         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2, ivec &amp;selfi, ivec &amp;rv2i ) <span class="keyword">const</span>; 
     224<a name="l00265"></a>00265         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv2, ivec &amp;selfi, ivec &amp;rv2i ) <span class="keyword">const</span>; 
    225225<a name="l00267"></a><a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241">00267</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>()<span class="keyword"> const </span>{ 
    226226<a name="l00268"></a>00268                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>.length()&gt;0 ? min (<a class="code" href="classbdm_1_1RV.html#aef6703854820bbf61736738f1bac6896" title="Vector of shifts from current time.">times</a>) : 0; 
    … …  
    282282<a name="l00365"></a>00365         <span class="keyword">virtual</span> mat <a class="code" href="classbdm_1_1epdf.html#ab4cf45fd83cc7573ede9fe1215256058" title="Returns N samples,  from density .">sample_m</a> ( <span class="keywordtype">int</span> N ) <span class="keyword">const</span>; 
    283283<a name="l00366"></a>00366  
    284 <a name="l00369"></a><a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">00369</a>         <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249" title="Compute log-probability of argument val In case the argument is out of suport return...">evallog</a> ( <span class="keyword">const</span> vec &amp;val )<span class="keyword"> const </span>{ 
     284<a name="l00369"></a><a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">00369</a>         <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1epdf.html#adeab266d63c236c277538867d5c3f249">evallog</a> ( <span class="keyword">const</span> vec &amp;val )<span class="keyword"> const </span>{ 
    285285<a name="l00370"></a>00370                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;not implemented&quot;</span> ); 
    286286<a name="l00371"></a>00371                 <span class="keywordflow">return</span> 0.0; 
    … …  
    331331<a name="l00436"></a>00436                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1epdf.html#a16adac20ec7fe07e1ea0b27d917788ce" title="dimension of the random variable">dim</a>; 
    332332<a name="l00437"></a>00437         } 
    333 <a name="l00445"></a><a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725">00445</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ) { 
     333<a name="l00445"></a><a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725">00445</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1epdf.html#afa9efc98a065b31c630fe18cc418f725">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ) { 
    334334<a name="l00446"></a>00446                 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr&lt;RV&gt;</a> r = UI::build&lt;RV&gt; ( <span class="keyword">set</span>, <span class="stringliteral">&quot;rv&quot;</span>, UI::optional ); 
    335335<a name="l00447"></a>00447                 <span class="keywordflow">if</span> ( r ) { 
    … …  
    403403<a name="l00533"></a>00533         } 
    404404<a name="l00534"></a>00534  
    405 <a name="l00544"></a>00544         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a30a0bceb948e287d497c578e371b1667" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ); 
     405<a name="l00544"></a>00544         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf.html#a30a0bceb948e287d497c578e371b1667">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ); 
    406406<a name="l00546"></a>00546  
    407407<a name="l00549"></a>00549         <span class="keywordtype">void</span> set_rvc ( <span class="keyword">const</span> RV &amp;rvc0 ) { 
    … …  
    426426<a name="l00572"></a>00572         } 
    427427<a name="l00573"></a>00573  
    428 <a name="l00576"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">00576</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( <span class="keyword">const</span> vec &amp;cond ) { 
     428<a name="l00576"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">00576</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> ( <span class="keyword">const</span> vec &amp;cond ) { 
    429429<a name="l00577"></a>00577                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> ); 
    430430<a name="l00578"></a>00578         } 
    … …  
    531531<a name="l00737"></a>00737                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rv_hist0 =rv_hist.remove_time();  <span class="comment">// these RVs will form history at time =0</span> 
    532532<a name="l00738"></a>00738                 <span class="comment">// now we need to know what is needed from Up</span> 
    533 <a name="l00739"></a>00739                 rv_hist = rv_hist.<a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e" title="return rvs with expanded delayes and sorted in the order of:">expand_delayes</a>(); <span class="comment">// full regressor - including time 0</span> 
     533<a name="l00739"></a>00739                 rv_hist = rv_hist.<a class="code" href="classbdm_1_1RV.html#ac5819f71d774649412c10b8e1716be1e" title="return rvs with expanded delayes and sorted in the order of: ">expand_delayes</a>(); <span class="comment">// full regressor - including time 0</span> 
    534534<a name="l00740"></a>00740                 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>=rv_hist.<a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a>(rv_hist0);   <span class="comment">// remove time 0</span> 
    535535<a name="l00741"></a>00741                 <a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a> = zeros ( <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ); 
    … …  
    537537<a name="l00743"></a>00743                 <span class="comment">// decide if we need to copy val to history</span> 
    538538<a name="l00744"></a>00744                 <span class="keywordflow">if</span> (<a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() &gt;0) { 
    539 <a name="l00745"></a>00745                         <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a> = rv_hist0.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a>(rv_up); <span class="comment">// indeces of elements of rv_up to be copied</span> 
     539<a name="l00745"></a>00745                         <a class="code" href="classbdm_1_1datalink__buffered.html#a0b09e10e42212497170ed5642bce7dbc" title="v2h: indeces of up too be pushed to h">v2h_up</a> = rv_hist0.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a>(rv_up); <span class="comment">// indeces of elements of rv_up to be copied</span> 
    540540<a name="l00746"></a>00746                 } <span class="comment">// else v2h_up is empty</span> 
    541541<a name="l00747"></a>00747                  
    542 <a name="l00748"></a>00748                 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( rv, <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a>, <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a> ); 
     542<a name="l00748"></a>00748                 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rv, <a class="code" href="classbdm_1_1datalink__buffered.html#ada58df16761169992059b8cd91d070c5" title="h2v : indeces in history">h2v_hist</a>, <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a> ); 
    543543<a name="l00749"></a>00749  
    544544<a name="l00750"></a>00750                 <a class="code" href="classbdm_1_1datalink.html#abc8ff50395fc1066a1e486dea18d987c" title="Remember how long val should be.">downsize</a> = <a class="code" href="classbdm_1_1datalink__part.html#a64f64e7e6357419240bc2b1b0749c943" title="indeces of values in vector downsize">v2v_down</a>.length() + <a class="code" href="classbdm_1_1datalink__buffered.html#aa1ce2032fe5c86fa87d80baccb9aacd7" title="h2v : indeces in down">h2v_down</a>.length(); 
    … …  
    549549<a name="l00756"></a>00756                 ivec ind_H; 
    550550<a name="l00757"></a>00757                 ivec ind_h0; 
    551 <a name="l00758"></a>00758                 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a>(rv1, ind_H, ind_h0); <span class="comment">// find indeces of rv in </span> 
     551<a name="l00758"></a>00758                 <a class="code" href="classbdm_1_1datalink__buffered.html#a211c56b68be3864d535a8b75d735ebdc" title="rv of the history">Hrv</a>.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a>(rv1, ind_H, ind_h0); <span class="comment">// find indeces of rv in </span> 
    552552<a name="l00759"></a>00759                 set_subvector(<a class="code" href="classbdm_1_1datalink__buffered.html#aa7cb8a47b88b95fde0255a041d076988" title="History, ordered as .">history</a>, ind_H, hist0(ind_h0)); <span class="comment">// copy given hist to appropriate places</span> 
    553553<a name="l00760"></a>00760         } 
    … …  
    556556<a name="l00764"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html">00764</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__2to1__buffered.html" title="buffered datalink from 2 vectors to 1">datalink_2to1_buffered</a> { 
    557557<a name="l00765"></a>00765 <span class="keyword">protected</span>: 
    558 <a name="l00766"></a>00766         <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> dl1; 
    559 <a name="l00767"></a>00767         <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> dl2; 
    560 <a name="l00768"></a>00768 <span class="keyword">public</span>: 
    561 <a name="l00770"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef1441b4885ae4d8e95b3ff28e575364">00770</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef1441b4885ae4d8e95b3ff28e575364" title="set connection between RVs">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up1, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up2 ) { 
    562 <a name="l00771"></a>00771                 dl1.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up1 ); 
    563 <a name="l00772"></a>00772                 dl2.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up2 ); 
    564 <a name="l00773"></a>00773         } 
    565 <a name="l00774"></a>00774         <span class="keywordtype">void</span> filldown ( <span class="keyword">const</span> vec &amp;val1, <span class="keyword">const</span> vec &amp;val2, vec &amp;val_down ) { 
    566 <a name="l00775"></a>00775                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( val_down.length() &gt;= dl1.<a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>() + dl2.<a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>(), <span class="stringliteral">&quot;short val_down&quot;</span> ); 
    567 <a name="l00776"></a>00776                 dl1.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val1, val_down ); 
    568 <a name="l00777"></a>00777                 dl2.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val2, val_down ); 
    569 <a name="l00778"></a>00778         } 
    570 <a name="l00779"></a>00779         <span class="keywordtype">void</span> step ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;ut ) { 
    571 <a name="l00780"></a>00780                 dl1.step ( dt ); 
    572 <a name="l00781"></a>00781                 dl2.step ( ut ); 
    573 <a name="l00782"></a>00782         } 
    574 <a name="l00783"></a>00783 }; 
    575 <a name="l00784"></a>00784  
    576 <a name="l00785"></a>00785  
    577 <a name="l00786"></a>00786  
    578 <a name="l00788"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00788</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> { 
    579 <a name="l00789"></a>00789 <span class="keyword">protected</span>: 
    580 <a name="l00791"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9">00791</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>; 
    581 <a name="l00792"></a>00792  
    582 <a name="l00794"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783">00794</a>         ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>; 
    583 <a name="l00795"></a>00795  
    584 <a name="l00797"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc">00797</a>         ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>; 
    585 <a name="l00798"></a>00798  
    586 <a name="l00799"></a>00799 <span class="keyword">public</span>: 
    587 <a name="l00801"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6">00801</a>         <a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6" title="Constructor.">datalink_m2e</a>() : <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ( 0 ) { } 
     558<a name="l00767"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef99848172760c7d989b59063ca1bb55">00767</a>         <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef99848172760c7d989b59063ca1bb55" title="link 1st vector to down">dl1</a>; 
     559<a name="l00769"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#a2031ad6aeef42ad9ef10d73e7b8cc0f2">00769</a>         <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#a2031ad6aeef42ad9ef10d73e7b8cc0f2" title="link 2nd vector to down">dl2</a>; 
     560<a name="l00770"></a>00770 <span class="keyword">public</span>: 
     561<a name="l00772"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef1441b4885ae4d8e95b3ff28e575364">00772</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef1441b4885ae4d8e95b3ff28e575364" title="set connection between RVs">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up1, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up2 ) { 
     562<a name="l00773"></a>00773                 <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef99848172760c7d989b59063ca1bb55" title="link 1st vector to down">dl1</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up1 ); 
     563<a name="l00774"></a>00774                 <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#a2031ad6aeef42ad9ef10d73e7b8cc0f2" title="link 2nd vector to down">dl2</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rv, rv_up2 ); 
     564<a name="l00775"></a>00775         } 
     565<a name="l00777"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aee6ee8524a30aceac28bab01b9b4cb39">00777</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aee6ee8524a30aceac28bab01b9b4cb39" title="fill values of down from the values of the two up vectors">filldown</a> ( <span class="keyword">const</span> vec &amp;val1, <span class="keyword">const</span> vec &amp;val2, vec &amp;val_down ) { 
     566<a name="l00778"></a>00778                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( val_down.length() &gt;= <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef99848172760c7d989b59063ca1bb55" title="link 1st vector to down">dl1</a>.<a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>() + <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#a2031ad6aeef42ad9ef10d73e7b8cc0f2" title="link 2nd vector to down">dl2</a>.<a class="code" href="classbdm_1_1datalink.html#a8f0cce4477e906f3090bb803e06d8698" title="access functions">_downsize</a>(), <span class="stringliteral">&quot;short val_down&quot;</span> ); 
     567<a name="l00779"></a>00779                 <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef99848172760c7d989b59063ca1bb55" title="link 1st vector to down">dl1</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val1, val_down ); 
     568<a name="l00780"></a>00780                 <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#a2031ad6aeef42ad9ef10d73e7b8cc0f2" title="link 2nd vector to down">dl2</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( val2, val_down ); 
     569<a name="l00781"></a>00781         } 
     570<a name="l00783"></a><a class="code" href="classbdm_1_1datalink__2to1__buffered.html#ab083becb2d0744d0346a0267d70ea475">00783</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#ab083becb2d0744d0346a0267d70ea475" title="update buffer">step</a> ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;ut ) { 
     571<a name="l00784"></a>00784                 <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#aef99848172760c7d989b59063ca1bb55" title="link 1st vector to down">dl1</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f" title="push current data to history">step</a> ( dt ); 
     572<a name="l00785"></a>00785                 <a class="code" href="classbdm_1_1datalink__2to1__buffered.html#a2031ad6aeef42ad9ef10d73e7b8cc0f2" title="link 2nd vector to down">dl2</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f" title="push current data to history">step</a> ( ut ); 
     573<a name="l00786"></a>00786         } 
     574<a name="l00787"></a>00787 }; 
     575<a name="l00788"></a>00788  
     576<a name="l00789"></a>00789  
     577<a name="l00790"></a>00790  
     578<a name="l00792"></a><a class="code" href="classbdm_1_1datalink__m2e.html">00792</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> { 
     579<a name="l00793"></a>00793 <span class="keyword">protected</span>: 
     580<a name="l00795"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9">00795</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>; 
     581<a name="l00796"></a>00796  
     582<a name="l00798"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783">00798</a>         ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a>; 
     583<a name="l00799"></a>00799  
     584<a name="l00801"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc">00801</a>         ivec <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>; 
    588585<a name="l00802"></a>00802  
    589 <a name="l00804"></a>00804         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#aadd918bf877c48714cff51ee4ad989b0" title="Set connection between vectors.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up ); 
    590 <a name="l00805"></a>00805  
    591 <a name="l00807"></a>00807         vec <a class="code" href="classbdm_1_1datalink__m2e.html#a7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> ( <span class="keyword">const</span> vec &amp;val_up ); 
    592 <a name="l00808"></a>00808  
    593 <a name="l00810"></a>00810         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#ab29bc3c7bf2a1d87e77ccaa793d097d5" title="Copy corresponding values to Up.condition.">pushup_cond</a> ( vec &amp;val_up, <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond ); 
    594 <a name="l00811"></a>00811 }; 
     586<a name="l00803"></a>00803 <span class="keyword">public</span>: 
     587<a name="l00805"></a><a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6">00805</a>         <a class="code" href="classbdm_1_1datalink__m2e.html#a5ad951e9cf850c9bfe4e492e91a50af6" title="Constructor.">datalink_m2e</a>() : <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ( 0 ) { } 
     588<a name="l00806"></a>00806  
     589<a name="l00808"></a>00808         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#aadd918bf877c48714cff51ee4ad989b0" title="Set connection between vectors.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up ); 
     590<a name="l00809"></a>00809  
     591<a name="l00811"></a>00811         vec <a class="code" href="classbdm_1_1datalink__m2e.html#a7ba850822e3cf9a4b079afc7e7c01703" title="Construct condition.">get_cond</a> ( <span class="keyword">const</span> vec &amp;val_up ); 
    595592<a name="l00812"></a>00812  
    596 <a name="l00815"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00815</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html" title="DataLink is a connection between mpdf and its superordinate (Up) This class links...">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a> { 
    597 <a name="l00816"></a>00816 <span class="keyword">protected</span>: 
    598 <a name="l00818"></a><a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d">00818</a>         ivec <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>; 
    599 <a name="l00820"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5">00820</a>         ivec <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>; 
    600 <a name="l00821"></a>00821  
    601 <a name="l00822"></a>00822 <span class="keyword">public</span>: 
    602 <a name="l00824"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287">00824</a>         <a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {}; 
    603 <a name="l00826"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4">00826</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc_up ) { 
    604 <a name="l00827"></a>00827                 <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">datalink_m2e::set_connection</a> ( rv, rvc, rv_up ); 
    605 <a name="l00828"></a>00828                 <span class="comment">//establish c2c connection</span> 
    606 <a name="l00829"></a>00829                 rvc.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55" title="when this rv is a part of bigger rv, this function returns indices of self in the...">dataind</a> ( rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a> ); 
    607 <a name="l00830"></a>00830                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>.length() + <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>.length() == <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">&quot;cond is not fully given&quot;</span> ); 
    608 <a name="l00831"></a>00831         } 
    609 <a name="l00832"></a>00832  
    610 <a name="l00834"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90">00834</a>         vec <a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &amp;quot;Up&amp;quot;.">get_cond</a> ( <span class="keyword">const</span> vec &amp;val_up, <span class="keyword">const</span> vec &amp;cond_up ) { 
    611 <a name="l00835"></a>00835                 vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ); 
    612 <a name="l00836"></a>00836                 set_subvector ( tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a> ) ); 
    613 <a name="l00837"></a>00837                 set_subvector ( tmp, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, cond_up ( <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a> ) ); 
    614 <a name="l00838"></a>00838                 <span class="keywordflow">return</span> tmp; 
    615 <a name="l00839"></a>00839         } 
    616 <a name="l00841"></a>00841  
    617 <a name="l00842"></a>00842 }; 
    618 <a name="l00843"></a>00843  
    619 <a name="l00849"></a><a class="code" href="classbdm_1_1logger.html">00849</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> { 
    620 <a name="l00850"></a>00850 <span class="keyword">protected</span>: 
    621 <a name="l00852"></a><a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f">00852</a>         Array&lt;RV&gt; <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>; 
    622 <a name="l00854"></a><a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02">00854</a>         Array&lt;string&gt; <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>; 
    623 <a name="l00855"></a>00855 <span class="keyword">public</span>: 
    624 <a name="l00857"></a><a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf">00857</a>         <a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a>() : <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( 0 ), <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> ( 0 ) {} 
    625 <a name="l00858"></a>00858  
    626 <a name="l00861"></a><a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">00861</a>         <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keywordtype">string</span> prefix = <span class="stringliteral">&quot;&quot;</span> ) { 
    627 <a name="l00862"></a>00862                 <span class="keywordtype">int</span> id; 
    628 <a name="l00863"></a>00863                 <span class="keywordflow">if</span> ( rv.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() &gt; 0 ) { 
    629 <a name="l00864"></a>00864                         <span class="keywordtype">id</span> = <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length(); 
    630 <a name="l00865"></a>00865                         <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> = concat ( <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix ); <span class="comment">// diff</span> 
    631 <a name="l00866"></a>00866                         <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length ( <span class="keywordtype">id</span> + 1, <span class="keyword">true</span> ); 
    632 <a name="l00867"></a>00867                         <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( <span class="keywordtype">id</span> ) = rv; 
    633 <a name="l00868"></a>00868                 } <span class="keywordflow">else</span> { 
    634 <a name="l00869"></a>00869                         <span class="keywordtype">id</span> = -1; 
    635 <a name="l00870"></a>00870                 } 
    636 <a name="l00871"></a>00871                 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span> 
    637 <a name="l00872"></a>00872         } 
    638 <a name="l00873"></a>00873  
    639 <a name="l00875"></a><a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309">00875</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &amp;v ) { 
    640 <a name="l00876"></a>00876                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> ); 
    641 <a name="l00877"></a>00877         }; 
    642 <a name="l00879"></a><a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6">00879</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6" title="log this double">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &amp;d ) { 
     593<a name="l00814"></a>00814         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2e.html#ab29bc3c7bf2a1d87e77ccaa793d097d5" title="Copy corresponding values to Up.condition.">pushup_cond</a> ( vec &amp;val_up, <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond ); 
     594<a name="l00815"></a>00815 }; 
     595<a name="l00816"></a>00816  
     596<a name="l00819"></a><a class="code" href="classbdm_1_1datalink__m2m.html">00819</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1datalink__m2m.html">datalink_m2m</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1datalink__m2e.html" title="Data link with a condition.">datalink_m2e</a> { 
     597<a name="l00820"></a>00820 <span class="keyword">protected</span>: 
     598<a name="l00822"></a><a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d">00822</a>         ivec <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a>; 
     599<a name="l00824"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5">00824</a>         ivec <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>; 
     600<a name="l00825"></a>00825  
     601<a name="l00826"></a>00826 <span class="keyword">public</span>: 
     602<a name="l00828"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287">00828</a>         <a class="code" href="classbdm_1_1datalink__m2m.html#a3baed32cb66f0e2f731032cec0a4d287" title="Constructor.">datalink_m2m</a>() {}; 
     603<a name="l00830"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4">00830</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">set_connection</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv_up, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rvc_up ) { 
     604<a name="l00831"></a>00831                 <a class="code" href="classbdm_1_1datalink__m2m.html#a0ed49a99e8a3be264b952558b6f515d4" title="Set connection between the vectors.">datalink_m2e::set_connection</a> ( rv, rvc, rv_up ); 
     605<a name="l00832"></a>00832                 <span class="comment">//establish c2c connection</span> 
     606<a name="l00833"></a>00833                 rvc.<a class="code" href="classbdm_1_1RV.html#acbebdb5e0d30101a6eb63550ef701c55">dataind</a> ( rvc_up, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a> ); 
     607<a name="l00834"></a>00834                 <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>.length() + <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>.length() == <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a>, <span class="stringliteral">&quot;cond is not fully given&quot;</span> ); 
     608<a name="l00835"></a>00835         } 
     609<a name="l00836"></a>00836  
     610<a name="l00838"></a><a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90">00838</a>         vec <a class="code" href="classbdm_1_1datalink__m2m.html#a911fb7fcfa80d4e31db8e0cc03141a90" title="Get cond for myself from val and cond of &amp;quot;Up&amp;quot;.">get_cond</a> ( <span class="keyword">const</span> vec &amp;val_up, <span class="keyword">const</span> vec &amp;cond_up ) { 
     611<a name="l00839"></a>00839                 vec tmp ( <a class="code" href="classbdm_1_1datalink__m2e.html#a3fb26525e0bfa7932a37c5cd404801f9" title="Remember how long cond should be.">condsize</a> ); 
     612<a name="l00840"></a>00840                 set_subvector ( tmp, <a class="code" href="classbdm_1_1datalink__m2e.html#a9e0048d87bda78e9b8d38761440c7abc" title="upper_val-to-local_cond link, indices of the local cond">v2c_lo</a>, val_up ( <a class="code" href="classbdm_1_1datalink__m2e.html#a43fe3e2d7aa04134053ec15793722783" title="upper_val-to-local_cond link, indices of the upper val">v2c_up</a> ) ); 
     613<a name="l00841"></a>00841                 set_subvector ( tmp, <a class="code" href="classbdm_1_1datalink__m2m.html#a0ea05c47de4538b7042ff878e6e309a5" title="cond-to-cond link, indices of the local cond">c2c_lo</a>, cond_up ( <a class="code" href="classbdm_1_1datalink__m2m.html#ad64dda6f92654628276bbcebb7600d0d" title="cond-to-cond link, indices of the upper cond">c2c_up</a> ) ); 
     614<a name="l00842"></a>00842                 <span class="keywordflow">return</span> tmp; 
     615<a name="l00843"></a>00843         } 
     616<a name="l00845"></a>00845  
     617<a name="l00846"></a>00846 }; 
     618<a name="l00847"></a>00847  
     619<a name="l00853"></a><a class="code" href="classbdm_1_1logger.html">00853</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> { 
     620<a name="l00854"></a>00854 <span class="keyword">protected</span>: 
     621<a name="l00856"></a><a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f">00856</a>         Array&lt;RV&gt; <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>; 
     622<a name="l00858"></a><a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02">00858</a>         Array&lt;string&gt; <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>; 
     623<a name="l00859"></a>00859 <span class="keyword">public</span>: 
     624<a name="l00861"></a><a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf">00861</a>         <a class="code" href="classbdm_1_1logger.html#af9c2fe7db5ddbda0098a4a5bd2c29fbf" title="Default constructor.">logger</a>() : <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( 0 ), <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> ( 0 ) {} 
     625<a name="l00862"></a>00862  
     626<a name="l00865"></a><a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">00865</a>         <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv, <span class="keywordtype">string</span> prefix = <span class="stringliteral">&quot;&quot;</span> ) { 
     627<a name="l00866"></a>00866                 <span class="keywordtype">int</span> id; 
     628<a name="l00867"></a>00867                 <span class="keywordflow">if</span> ( rv.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() &gt; 0 ) { 
     629<a name="l00868"></a>00868                         <span class="keywordtype">id</span> = <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.length(); 
     630<a name="l00869"></a>00869                         <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a> = concat ( <a class="code" href="classbdm_1_1logger.html#a68ca1f05cf3d414ba0f39211977b8d02" title="Names of logged quantities, e.g. names of algorithm variants.">names</a>, prefix ); <span class="comment">// diff</span> 
     631<a name="l00870"></a>00870                         <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a>.set_length ( <span class="keywordtype">id</span> + 1, <span class="keyword">true</span> ); 
     632<a name="l00871"></a>00871                         <a class="code" href="classbdm_1_1logger.html#ac54566a4554089443a20b2a49ed1a61f" title="RVs of all logged variables.">entries</a> ( <span class="keywordtype">id</span> ) = rv; 
     633<a name="l00872"></a>00872                 } <span class="keywordflow">else</span> { 
     634<a name="l00873"></a>00873                         <span class="keywordtype">id</span> = -1; 
     635<a name="l00874"></a>00874                 } 
     636<a name="l00875"></a>00875                 <span class="keywordflow">return</span> id; <span class="comment">// identifier of the last entry</span> 
     637<a name="l00876"></a>00876         } 
     638<a name="l00877"></a>00877  
     639<a name="l00879"></a><a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309">00879</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> vec &amp;v ) { 
    643640<a name="l00880"></a>00880                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> ); 
    644641<a name="l00881"></a>00881         }; 
    645 <a name="l00882"></a>00882  
    646 <a name="l00884"></a><a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99">00884</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99" title="Shifts storage position for another time step.">step</a>() { 
    647 <a name="l00885"></a>00885                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemneted&quot;</span> ); 
    648 <a name="l00886"></a>00886         }; 
    649 <a name="l00887"></a>00887  
    650 <a name="l00889"></a><a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d">00889</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {}; 
    651 <a name="l00890"></a>00890  
    652 <a name="l00892"></a><a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc">00892</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {}; 
    653 <a name="l00893"></a>00893  
    654 <a name="l00894"></a>00894 }; 
    655 <a name="l00895"></a>00895  
    656 <a name="l00899"></a><a class="code" href="classbdm_1_1mepdf.html">00899</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> { 
    657 <a name="l00901"></a>00901         <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> iepdf; 
    658 <a name="l00902"></a>00902 <span class="keyword">public</span>: 
    659 <a name="l00904"></a><a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155">00904</a>         <a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>() { } 
    660 <a name="l00906"></a><a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c">00906</a>         <a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c" title="Set internal shared pointer.">mepdf</a> ( <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> em ) { 
    661 <a name="l00907"></a>00907                 iepdf = em; 
    662 <a name="l00908"></a>00908                 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( *iepdf.<a class="code" href="classbdm_1_1shared__ptr.html#a37ebcfb6750dd7b5630f1d2354c07a96">get</a>() ); 
    663 <a name="l00909"></a>00909                 <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> = 0; 
    664 <a name="l00910"></a>00910         } 
    665 <a name="l00911"></a>00911  
    666 <a name="l00913"></a><a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e">00913</a>         vec <a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e" title="empty">samplecond</a> ( <span class="keyword">const</span> vec &amp;cond ) { 
    667 <a name="l00914"></a>00914                 <span class="keywordflow">return</span> iepdf-&gt;sample(); 
    668 <a name="l00915"></a>00915         } 
    669 <a name="l00916"></a><a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b">00916</a>         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond ) { 
    670 <a name="l00917"></a>00917                 <span class="keywordflow">return</span> iepdf-&gt;evallog ( val ); 
    671 <a name="l00918"></a>00918         } 
    672 <a name="l00919"></a>00919  
    673 <a name="l00927"></a>00927         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#a27ef18a3e3b1b5de02739d1324bf25fb" title="Load from structure with elements:.">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ); 
    674 <a name="l00928"></a>00928 }; 
    675 <a name="l00929"></a>00929 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( mepdf ); 
    676 <a name="l00930"></a>00930 SHAREDPTR ( mepdf ); 
    677 <a name="l00931"></a>00931  
    678 <a name="l00933"></a>00933 RV get_composite_rv ( <span class="keyword">const</span> Array&lt;shared_ptr&lt;mpdf&gt; &gt; &amp;mpdfs, <span class="keywordtype">bool</span> checkoverlap = <span class="keyword">false</span> ); 
    679 <a name="l00934"></a>00934  
    680 <a name="l00950"></a><a class="code" href="classbdm_1_1DS.html">00950</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> { 
    681 <a name="l00951"></a>00951 <span class="keyword">protected</span>: 
    682 <a name="l00953"></a><a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9">00953</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a>; 
    683 <a name="l00955"></a><a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983">00955</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>; 
    684 <a name="l00957"></a><a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd">00957</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd" title="size of output">ytsize</a>; 
    685 <a name="l00959"></a><a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec">00959</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>; 
    686 <a name="l00961"></a><a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702">00961</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span> 
    687 <a name="l00963"></a><a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995">00963</a> <span class="comment"></span>                <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>; <span class="comment">//</span> 
    688 <a name="l00965"></a><a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867">00965</a> <span class="comment"></span>        <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, L_ut; 
    689 <a name="l00966"></a>00966 <span class="keyword">public</span>: 
    690 <a name="l00968"></a><a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a">00968</a>                 <a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() : <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>(),<a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>() {}; 
    691 <a name="l00969"></a>00969  
    692 <a name="l00971"></a><a class="code" href="classbdm_1_1DS.html#a76d11928675f276f805655ae2a05d773">00971</a>         <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#a76d11928675f276f805655ae2a05d773" title="Returns maximum number of provided data, by default it is set to maximum allowed...">max_length</a>() {<span class="keywordflow">return</span> std::numeric_limits&lt; int &gt;::max();} 
    693 <a name="l00973"></a><a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba">00973</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt ) { 
    694 <a name="l00974"></a>00974                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> ); 
    695 <a name="l00975"></a>00975         } 
    696 <a name="l00977"></a><a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832">00977</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a> ( vec &amp;dt, <span class="keyword">const</span> ivec &amp;indeces ) { 
     642<a name="l00883"></a><a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6">00883</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#aaa1d72cd3d2ff6bbf87340154af02ea6" title="log this double">logit</a> ( <span class="keywordtype">int</span> <span class="keywordtype">id</span>, <span class="keyword">const</span> <span class="keywordtype">double</span> &amp;d ) { 
     643<a name="l00884"></a>00884                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> ); 
     644<a name="l00885"></a>00885         }; 
     645<a name="l00886"></a>00886  
     646<a name="l00888"></a><a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99">00888</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#af137e9a0c905357c5c3fbb16eac34a99" title="Shifts storage position for another time step.">step</a>() { 
     647<a name="l00889"></a>00889                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemneted&quot;</span> ); 
     648<a name="l00890"></a>00890         }; 
     649<a name="l00891"></a>00891  
     650<a name="l00893"></a><a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d">00893</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#a0e3fc7d13e23a8f71fc7c8a5ea68559d" title="Finalize storing information.">finalize</a>() {}; 
     651<a name="l00894"></a>00894  
     652<a name="l00896"></a><a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc">00896</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1logger.html#acd6291a73491f755dc7bc88d022eb2fc" title="Initialize the storage.">init</a>() {}; 
     653<a name="l00897"></a>00897  
     654<a name="l00898"></a>00898 }; 
     655<a name="l00899"></a>00899  
     656<a name="l00903"></a><a class="code" href="classbdm_1_1mepdf.html">00903</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1mepdf.html" title="Unconditional mpdf, allows using epdf in the role of mpdf.">mepdf</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a> { 
     657<a name="l00905"></a>00905         <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> iepdf; 
     658<a name="l00906"></a>00906 <span class="keyword">public</span>: 
     659<a name="l00908"></a><a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155">00908</a>         <a class="code" href="classbdm_1_1mepdf.html#a4a2b01e7bb510c6b8946757cae6c9155" title="Default constructor.">mepdf</a>() { } 
     660<a name="l00910"></a><a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c">00910</a>         <a class="code" href="classbdm_1_1mepdf.html#a1f94e70702ff676f53d95ca7ec38e25c" title="Set internal shared pointer.">mepdf</a> ( <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> em ) { 
     661<a name="l00911"></a>00911                 iepdf = em; 
     662<a name="l00912"></a>00912                 <a class="code" href="classbdm_1_1mpdf.html#a147afacb393324bb3f9a7a89e33f835e" title="set internal pointer ep to point to given iepdf ">set_ep</a> ( *iepdf.<a class="code" href="classbdm_1_1shared__ptr.html#a37ebcfb6750dd7b5630f1d2354c07a96">get</a>() ); 
     663<a name="l00913"></a>00913                 <a class="code" href="classbdm_1_1mpdf.html#a7c1900976ff13dbc09c9729b3bbff9e6" title="dimension of the condition">dimc</a> = 0; 
     664<a name="l00914"></a>00914         } 
     665<a name="l00915"></a>00915  
     666<a name="l00917"></a><a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e">00917</a>         vec <a class="code" href="classbdm_1_1mepdf.html#ab904a90ef78294040b498717cc13015e" title="empty">samplecond</a> ( <span class="keyword">const</span> vec &amp;cond ) { 
     667<a name="l00918"></a>00918                 <span class="keywordflow">return</span> iepdf-&gt;sample(); 
     668<a name="l00919"></a>00919         } 
     669<a name="l00920"></a><a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b">00920</a>         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mepdf.html#a57decd7718f3789e9d1f10f19def935b" title="Shortcut for conditioning and evaluation of the internal epdf. In some cases, this...">evallogcond</a> ( <span class="keyword">const</span> vec &amp;val, <span class="keyword">const</span> vec &amp;cond ) { 
     670<a name="l00921"></a>00921                 <span class="keywordflow">return</span> iepdf-&gt;evallog ( val ); 
     671<a name="l00922"></a>00922         } 
     672<a name="l00923"></a>00923  
     673<a name="l00931"></a>00931         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1mepdf.html#a27ef18a3e3b1b5de02739d1324bf25fb">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ); 
     674<a name="l00932"></a>00932 }; 
     675<a name="l00933"></a>00933 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( mepdf ); 
     676<a name="l00934"></a>00934 SHAREDPTR ( mepdf ); 
     677<a name="l00935"></a>00935  
     678<a name="l00937"></a>00937 RV get_composite_rv ( <span class="keyword">const</span> Array&lt;shared_ptr&lt;mpdf&gt; &gt; &amp;mpdfs, <span class="keywordtype">bool</span> checkoverlap = <span class="keyword">false</span> ); 
     679<a name="l00938"></a>00938  
     680<a name="l00954"></a><a class="code" href="classbdm_1_1DS.html">00954</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> { 
     681<a name="l00955"></a>00955 <span class="keyword">protected</span>: 
     682<a name="l00957"></a><a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9">00957</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a>; 
     683<a name="l00959"></a><a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983">00959</a>         <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>; 
     684<a name="l00961"></a><a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd">00961</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd" title="size of output">ytsize</a>; 
     685<a name="l00963"></a><a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec">00963</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>; 
     686<a name="l00965"></a><a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702">00965</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; <span class="comment">//</span> 
     687<a name="l00967"></a><a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995">00967</a> <span class="comment"></span>                <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>; <span class="comment">//</span> 
     688<a name="l00969"></a><a class="code" href="classbdm_1_1DS.html#a13c89cfedbd132742534641ed69391d4">00969</a> <span class="comment"></span>        ivec <a class="code" href="classbdm_1_1DS.html#a13c89cfedbd132742534641ed69391d4" title="Remember its own index in Logger L, [0=dt, 1=ut].">LIDs</a>; 
     689<a name="l00970"></a>00970 <span class="keyword">public</span>: 
     690<a name="l00972"></a><a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a">00972</a>                 <a class="code" href="classbdm_1_1DS.html#abedd82e08ae6686b4b1732a122c2201a" title="default constructors">DS</a>() : <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>(),<a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>(), <a class="code" href="classbdm_1_1DS.html#a13c89cfedbd132742534641ed69391d4" title="Remember its own index in Logger L, [0=dt, 1=ut].">LIDs</a>(2) {}; 
     691<a name="l00973"></a>00973  
     692<a name="l00975"></a><a class="code" href="classbdm_1_1DS.html#a76d11928675f276f805655ae2a05d773">00975</a>         <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1DS.html#a76d11928675f276f805655ae2a05d773" title="Returns maximum number of provided data, by default it is set to maximum allowed...">max_length</a>() {<span class="keywordflow">return</span> std::numeric_limits&lt; int &gt;::max();} 
     693<a name="l00977"></a><a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba">00977</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt ) { 
    697694<a name="l00978"></a>00978                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> ); 
    698695<a name="l00979"></a>00979         } 
    699 <a name="l00980"></a>00980  
    700 <a name="l00982"></a><a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a">00982</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#af5baeee8528e5e4c5c7a344b2e3f192a" title="Accepts action variable and schedule it for application.">write</a> ( vec &amp;ut ) { 
    701 <a name="l00983"></a>00983                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> ); 
    702 <a name="l00984"></a>00984         } 
    703 <a name="l00985"></a>00985  
    704 <a name="l00987"></a><a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d">00987</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a6bced13f84f6bf04449728817e049e1d" title="Accepts action variables at specific indeces.">write</a> ( vec &amp;ut, <span class="keyword">const</span> ivec &amp;indeces ) { 
    705 <a name="l00988"></a>00988                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> ); 
    706 <a name="l00989"></a>00989         } 
    707 <a name="l00990"></a>00990  
    708 <a name="l00992"></a><a class="code" href="classbdm_1_1DS.html#a4df78b21d352013d8804a8dda860b7ea">00992</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a4df78b21d352013d8804a8dda860b7ea" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>()  
    709 <a name="l00993"></a>00993         { 
    710 <a name="l00994"></a>00994                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> ); 
    711 <a name="l00995"></a>00995         } 
    712 <a name="l00996"></a>00996  
    713 <a name="l00998"></a><a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e">00998</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) { 
    714 <a name="l00999"></a>00999                 <a class="code" href="bdmerror_8h.html#a7a3399d182b8e3065532596e76f84849" title="Throw std::runtime_exception if t is not true.">bdm_assert</a> ( <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> == <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <span class="stringliteral">&quot;invalid DS: dtsize (&quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> ) + <span class="stringliteral">&quot;) different from Drv &quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) ); 
    715 <a name="l01000"></a>01000                 <a class="code" href="bdmerror_8h.html#a7a3399d182b8e3065532596e76f84849" title="Throw std::runtime_exception if t is not true.">bdm_assert</a> ( <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> == <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <span class="stringliteral">&quot;invalid DS: utsize (&quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> ) + <span class="stringliteral">&quot;) different from Urv &quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) ); 
    716 <a name="l01001"></a>01001  
    717 <a name="l01002"></a>01002                 <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a> = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <span class="stringliteral">&quot;&quot;</span> ); 
    718 <a name="l01003"></a>01003                 L_ut = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">&quot;&quot;</span> ); 
    719 <a name="l01004"></a>01004         } 
    720 <a name="l01006"></a><a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf">01006</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) { 
    721 <a name="l01007"></a>01007                 vec tmp ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() + <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ); 
    722 <a name="l01008"></a>01008                 <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( tmp ); 
    723 <a name="l01009"></a>01009                 <span class="comment">// d is first in getdata</span> 
    724 <a name="l01010"></a>01010                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, tmp.left ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) ); 
    725 <a name="l01011"></a>01011                 <span class="comment">// u follows after d in getdata</span> 
    726 <a name="l01012"></a>01012                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( L_ut, tmp.mid ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) ); 
    727 <a name="l01013"></a>01013         } 
    728 <a name="l01015"></a><a class="code" href="classbdm_1_1DS.html#a069497b610296be053d862a2493be0ce">01015</a>         <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#a069497b610296be053d862a2493be0ce" title="access function">_drv</a>()<span class="keyword"> const </span>{ 
    729 <a name="l01016"></a>01016                 <span class="comment">//              return concat (Drv, Urv);// why!!!</span> 
    730 <a name="l01017"></a>01017                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>;<span class="comment">// why!!!</span> 
    731 <a name="l01018"></a>01018         } 
    732 <a name="l01020"></a><a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33">01020</a>         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{ 
    733 <a name="l01021"></a>01021                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; 
     696<a name="l00981"></a><a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832">00981</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#aa0bf451c7fea73ff4150ff9e83da4832" title="Returns data records at indeces.">getdata</a> ( vec &amp;dt, <span class="keyword">const</span> ivec &amp;indeces ) { 
     697<a name="l00982"></a>00982                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> ); 
     698<a name="l00983"></a>00983         } 
     699<a name="l00984"></a>00984  
     700<a name="l00986"></a><a class="code" href="classbdm_1_1DS.html#a19ed7794819b195e9d9adbd29da999bd">00986</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a19ed7794819b195e9d9adbd29da999bd" title="Accepts action variable and schedule it for application.">write</a> (<span class="keyword">const</span> vec &amp;ut ) { 
     701<a name="l00987"></a>00987                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> ); 
     702<a name="l00988"></a>00988         } 
     703<a name="l00989"></a>00989  
     704<a name="l00991"></a><a class="code" href="classbdm_1_1DS.html#aa5a8d2a5125cda38fd191c246129ece6">00991</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#aa5a8d2a5125cda38fd191c246129ece6" title="Accepts action variables at specific indeces.">write</a> (<span class="keyword">const</span> vec &amp;ut, <span class="keyword">const</span> ivec &amp;indeces ) { 
     705<a name="l00992"></a>00992                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> ); 
     706<a name="l00993"></a>00993         } 
     707<a name="l00994"></a>00994  
     708<a name="l00996"></a><a class="code" href="classbdm_1_1DS.html#a4df78b21d352013d8804a8dda860b7ea">00996</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a4df78b21d352013d8804a8dda860b7ea" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>()  
     709<a name="l00997"></a>00997         { 
     710<a name="l00998"></a>00998                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;abstract class&quot;</span> ); 
     711<a name="l00999"></a>00999         } 
     712<a name="l01000"></a>01000  
     713<a name="l01002"></a><a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e">01002</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3c9e417d85052396fe74c164857ee67e" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) { 
     714<a name="l01003"></a>01003                 <a class="code" href="bdmerror_8h.html#a7a3399d182b8e3065532596e76f84849" title="Throw std::runtime_exception if t is not true.">bdm_assert</a> ( <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> == <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <span class="stringliteral">&quot;invalid DS: dtsize (&quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> ) + <span class="stringliteral">&quot;) different from Drv &quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) ); 
     715<a name="l01004"></a>01004                 <a class="code" href="bdmerror_8h.html#a7a3399d182b8e3065532596e76f84849" title="Throw std::runtime_exception if t is not true.">bdm_assert</a> ( <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> == <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <span class="stringliteral">&quot;invalid DS: utsize (&quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> ) + <span class="stringliteral">&quot;) different from Urv &quot;</span> + num2str ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) ); 
     716<a name="l01005"></a>01005  
     717<a name="l01006"></a>01006                 <a class="code" href="classbdm_1_1DS.html#a13c89cfedbd132742534641ed69391d4" title="Remember its own index in Logger L, [0=dt, 1=ut].">LIDs</a>(0) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>, <span class="stringliteral">&quot;&quot;</span> ); 
     718<a name="l01007"></a>01007                 <a class="code" href="classbdm_1_1DS.html#a13c89cfedbd132742534641ed69391d4" title="Remember its own index in Logger L, [0=dt, 1=ut].">LIDs</a>(1) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">&quot;&quot;</span> ); 
     719<a name="l01008"></a>01008         } 
     720<a name="l01010"></a><a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf">01010</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#ae03d2c93cddd5c3a03107ddd3ae999cf" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) { 
     721<a name="l01011"></a>01011                 vec tmp ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() + <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ); 
     722<a name="l01012"></a>01012                 <a class="code" href="classbdm_1_1DS.html#ac1ec862dec7164fee3284c6f9a51b0ba" title="Returns full vector of observed data=[output, input].">getdata</a> ( tmp ); 
     723<a name="l01013"></a>01013                 <span class="comment">// d is first in getdata</span> 
     724<a name="l01014"></a>01014                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#a13c89cfedbd132742534641ed69391d4" title="Remember its own index in Logger L, [0=dt, 1=ut].">LIDs</a>(0), tmp.left ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) ); 
     725<a name="l01015"></a>01015                 <span class="comment">// u follows after d in getdata</span> 
     726<a name="l01016"></a>01016                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#a13c89cfedbd132742534641ed69391d4" title="Remember its own index in Logger L, [0=dt, 1=ut].">LIDs</a>(1), tmp.mid ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() ) ); 
     727<a name="l01017"></a>01017         } 
     728<a name="l01019"></a><a class="code" href="classbdm_1_1DS.html#a069497b610296be053d862a2493be0ce">01019</a>         <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#a069497b610296be053d862a2493be0ce" title="access function">_drv</a>()<span class="keyword"> const </span>{ 
     729<a name="l01020"></a>01020                 <span class="comment">//              return concat (Drv, Urv);// why!!!</span> 
     730<a name="l01021"></a>01021                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>;<span class="comment">// why!!!</span> 
    734731<a name="l01022"></a>01022         } 
    735 <a name="l01024"></a><a class="code" href="classbdm_1_1DS.html#ac09878f86907329ac631a3df8755c558">01024</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#ac09878f86907329ac631a3df8755c558" title="access function">_yrv</a>()<span class="keyword"> const </span>{ 
    736 <a name="l01025"></a>01025                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>; 
    737 <a name="l01026"></a>01026                 } 
    738 <a name="l01028"></a><a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc">01028</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc" title="set random variables">set_drv</a> (<span class="keyword">const</span>  <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;yrv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;urv) { 
    739 <a name="l01029"></a>01029                     <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a> = yrv; 
    740 <a name="l01030"></a>01030                         <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = concat(yrv,urv); 
    741 <a name="l01031"></a>01031                 <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv; 
    742 <a name="l01032"></a>01032         } 
    743 <a name="l01033"></a>01033 }; 
    744 <a name="l01034"></a>01034  
    745 <a name="l01056"></a><a class="code" href="classbdm_1_1BM.html">01056</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> { 
    746 <a name="l01057"></a>01057 <span class="keyword">protected</span>: 
    747 <a name="l01059"></a><a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed">01059</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; 
    748 <a name="l01061"></a><a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a">01061</a>         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; 
    749 <a name="l01063"></a><a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee">01063</a>         <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>; 
    750 <a name="l01064"></a>01064 <span class="keyword">public</span>: 
    751 <a name="l01067"></a>01067  
    752 <a name="l01068"></a>01068         <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>() : <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( 0 ), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( true ), <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 4 ), <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 4 ) { 
    753 <a name="l01069"></a>01069                 <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> = -1;<span class="comment">/*empty IDs*/</span> 
    754 <a name="l01070"></a>01070                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> = 0; 
    755 <a name="l01071"></a>01071                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) = 1;  <span class="comment">/*log only mean*/</span> 
    756 <a name="l01072"></a>01072         }; 
    757 <a name="l01073"></a>01073         <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &amp;B ) :  <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ( B.<a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( B.<a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( B.<a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ) {} 
    758 <a name="l01076"></a><a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">01076</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab" title="Copy function required in vectors, Arrays of BM etc. Have to be DELETED manually!...">_copy_</a>()<span class="keyword"> const </span>{ 
    759 <a name="l01077"></a>01077                 <span class="keywordflow">return</span> NULL; 
    760 <a name="l01078"></a>01078         }; 
    761 <a name="l01080"></a>01080  
    762 <a name="l01083"></a>01083  
    763 <a name="l01087"></a>01087         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> ( <span class="keyword">const</span> vec &amp;dt ) = 0; 
    764 <a name="l01089"></a>01089         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> ( <span class="keyword">const</span> mat &amp;Dt ); 
    765 <a name="l01092"></a><a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">01092</a>         <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( <span class="keyword">const</span> vec &amp;dt )<span class="keyword"> const </span>{ 
    766 <a name="l01093"></a>01093                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> ); 
    767 <a name="l01094"></a>01094                 <span class="keywordflow">return</span> 0.0; 
    768 <a name="l01095"></a>01095         } 
    769 <a name="l01096"></a>01096  
    770 <a name="l01098"></a><a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae">01098</a>         vec <a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> ( <span class="keyword">const</span> mat &amp;dt )<span class="keyword"> const </span>{ 
    771 <a name="l01099"></a>01099                 vec tmp ( dt.cols() ); 
    772 <a name="l01100"></a>01100                 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i &lt; dt.cols(); i++ ) { 
    773 <a name="l01101"></a>01101                         tmp ( i ) = <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( dt.get_col ( i ) ); 
    774 <a name="l01102"></a>01102                 } 
    775 <a name="l01103"></a>01103                 <span class="keywordflow">return</span> tmp; 
    776 <a name="l01104"></a>01104         } 
    777 <a name="l01105"></a>01105  
    778 <a name="l01107"></a><a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba">01107</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a>()<span class="keyword"> const </span>{ 
    779 <a name="l01108"></a>01108                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> ); 
    780 <a name="l01109"></a>01109                 <span class="keywordflow">return</span> NULL; 
    781 <a name="l01110"></a>01110         }; 
    782 <a name="l01112"></a><a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912">01112</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs conditional density of 1-step ahead predictor .">predictor</a>()<span class="keyword"> const </span>{ 
    783 <a name="l01113"></a>01113                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> ); 
    784 <a name="l01114"></a>01114                 <span class="keywordflow">return</span> NULL; 
    785 <a name="l01115"></a>01115         }; 
    786 <a name="l01117"></a>01117  
    787 <a name="l01122"></a>01122  
    788 <a name="l01124"></a><a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb">01124</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>; 
    789 <a name="l01126"></a><a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33">01126</a>         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{ 
    790 <a name="l01127"></a>01127                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>; 
    791 <a name="l01128"></a>01128         } 
    792 <a name="l01129"></a>01129  
    793 <a name="l01131"></a><a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4">01131</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a> ( <span class="keyword">const</span> vec &amp;val ) { 
    794 <a name="l01132"></a>01132                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented!&quot;</span> ); 
    795 <a name="l01133"></a>01133         } 
    796 <a name="l01134"></a>01134  
    797 <a name="l01136"></a>01136  
    798 <a name="l01137"></a>01137  
     732<a name="l01024"></a><a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33">01024</a>         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#aa6a9a375da64c82fc227bda3418a1f33" title="access function">_urv</a>()<span class="keyword"> const </span>{ 
     733<a name="l01025"></a>01025                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>; 
     734<a name="l01026"></a>01026         } 
     735<a name="l01028"></a><a class="code" href="classbdm_1_1DS.html#ac09878f86907329ac631a3df8755c558">01028</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1DS.html#ac09878f86907329ac631a3df8755c558" title="access function">_yrv</a>()<span class="keyword"> const </span>{ 
     736<a name="l01029"></a>01029                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a>; 
     737<a name="l01030"></a>01030                 } 
     738<a name="l01032"></a><a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc">01032</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc" title="set random variables">set_drv</a> (<span class="keyword">const</span>  <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;yrv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;urv) { 
     739<a name="l01033"></a>01033                     <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a> = yrv; 
     740<a name="l01034"></a>01034                         <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = concat(yrv,urv); 
     741<a name="l01035"></a>01035                 <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv; 
     742<a name="l01036"></a>01036         } 
     743<a name="l01037"></a>01037 }; 
     744<a name="l01038"></a>01038  
     745<a name="l01060"></a><a class="code" href="classbdm_1_1BM.html">01060</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1root.html" title="Root class of BDM objects.">root</a> { 
     746<a name="l01061"></a>01061 <span class="keyword">protected</span>: 
     747<a name="l01063"></a><a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed">01063</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; 
     748<a name="l01065"></a><a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a">01065</a>         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; 
     749<a name="l01067"></a><a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee">01067</a>         <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a>; 
     750<a name="l01068"></a>01068 <span class="keyword">public</span>: 
     751<a name="l01071"></a>01071  
     752<a name="l01072"></a>01072         <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>() : <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( 0 ), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( true ), <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 4 ), <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 4 ) { 
     753<a name="l01073"></a>01073                 <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> = -1;<span class="comment">/*empty IDs*/</span> 
     754<a name="l01074"></a>01074                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> = 0; 
     755<a name="l01075"></a>01075                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) = 1;  <span class="comment">/*log only mean*/</span> 
     756<a name="l01076"></a>01076         }; 
     757<a name="l01077"></a>01077         <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> &amp;B ) :  <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ( B.<a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> ), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ( B.<a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ), <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ( B.<a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> ) {} 
     758<a name="l01080"></a><a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">01080</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a>* <a class="code" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab" title="Copy function required in vectors, Arrays of BM etc. Have to be DELETED manually!...">_copy_</a>()<span class="keyword"> const </span>{ 
     759<a name="l01081"></a>01081                 <span class="keywordflow">return</span> NULL; 
     760<a name="l01082"></a>01082         }; 
     761<a name="l01084"></a>01084  
     762<a name="l01087"></a>01087  
     763<a name="l01091"></a>01091         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a60b1779a577367c369a932cabd3a6188" title="Incremental Bayes rule.">bayes</a> ( <span class="keyword">const</span> vec &amp;dt ) = 0; 
     764<a name="l01093"></a>01093         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a1dee3fddaf021e62d925289660a707dc" title="Batch Bayes rule (columns of Dt are observations).">bayesB</a> ( <span class="keyword">const</span> mat &amp;Dt ); 
     765<a name="l01096"></a><a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">01096</a>         <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( <span class="keyword">const</span> vec &amp;dt )<span class="keyword"> const </span>{ 
     766<a name="l01097"></a>01097                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> ); 
     767<a name="l01098"></a>01098                 <span class="keywordflow">return</span> 0.0; 
     768<a name="l01099"></a>01099         } 
     769<a name="l01100"></a>01100  
     770<a name="l01102"></a><a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae">01102</a>         vec <a class="code" href="classbdm_1_1BM.html#a0e8ebe61fb14990abe1254bd3dda5fae" title="Matrix version of logpred.">logpred_m</a> ( <span class="keyword">const</span> mat &amp;dt )<span class="keyword"> const </span>{ 
     771<a name="l01103"></a>01103                 vec tmp ( dt.cols() ); 
     772<a name="l01104"></a>01104                 <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i &lt; dt.cols(); i++ ) { 
     773<a name="l01105"></a>01105                         tmp ( i ) = <a class="code" href="classbdm_1_1BM.html#a50257e0c1e5b5c73153ea6e716ad8ae0">logpred</a> ( dt.get_col ( i ) ); 
     774<a name="l01106"></a>01106                 } 
     775<a name="l01107"></a>01107                 <span class="keywordflow">return</span> tmp; 
     776<a name="l01108"></a>01108         } 
     777<a name="l01109"></a>01109  
     778<a name="l01111"></a><a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba">01111</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>* <a class="code" href="classbdm_1_1BM.html#a688d7a2aced1e06aa1c468d73a9e5eba" title="Constructs a predictive density .">epredictor</a>()<span class="keyword"> const </span>{ 
     779<a name="l01112"></a>01112                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> ); 
     780<a name="l01113"></a>01113                 <span class="keywordflow">return</span> NULL; 
     781<a name="l01114"></a>01114         }; 
     782<a name="l01116"></a><a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912">01116</a>         <span class="keyword">virtual</span> <a class="code" href="classbdm_1_1mpdf.html" title="Conditional probability density, e.g. modeling , where  is random variable, rv, and...">mpdf</a>* <a class="code" href="classbdm_1_1BM.html#a598b25e3f3d96a5bc00a5faeb5b3c912" title="Constructs conditional density of 1-step ahead predictor .">predictor</a>()<span class="keyword"> const </span>{ 
     783<a name="l01117"></a>01117                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented&quot;</span> ); 
     784<a name="l01118"></a>01118                 <span class="keywordflow">return</span> NULL; 
     785<a name="l01119"></a>01119         }; 
     786<a name="l01121"></a>01121  
     787<a name="l01126"></a>01126  
     788<a name="l01128"></a><a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb">01128</a>         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>; 
     789<a name="l01130"></a><a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33">01130</a>         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1BM.html#ab5e8e016be16e4029c789063cb3f3b33" title="access function">_rvc</a>()<span class="keyword"> const </span>{ 
     790<a name="l01131"></a>01131                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ade95c590d650b2db423d53992f0906cb" title="Name of extension variable.">rvc</a>; 
     791<a name="l01132"></a>01132         } 
     792<a name="l01133"></a>01133  
     793<a name="l01135"></a><a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4">01135</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a6799f4b16a6a59ed58b1d0d6e17116f4" title="Substitute val for rvc.">condition</a> ( <span class="keyword">const</span> vec &amp;val ) { 
     794<a name="l01136"></a>01136                 <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;Not implemented!&quot;</span> ); 
     795<a name="l01137"></a>01137         } 
     796<a name="l01138"></a>01138  
    799797<a name="l01140"></a>01140  
    800 <a name="l01141"></a>01141         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; _drv()<span class="keyword"> const </span>{ 
    801 <a name="l01142"></a>01142                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; 
    802 <a name="l01143"></a>01143         } 
    803 <a name="l01144"></a>01144         <span class="keywordtype">void</span> set_drv ( <span class="keyword">const</span> RV &amp;rv ) { 
    804 <a name="l01145"></a>01145                 <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> = rv; 
    805 <a name="l01146"></a>01146         } 
    806 <a name="l01147"></a>01147         <span class="keywordtype">void</span> set_rv ( <span class="keyword">const</span> RV &amp;rv ) { 
    807 <a name="l01148"></a>01148                 <span class="keyword">const_cast&lt;</span>epdf&amp;<span class="keyword">&gt;</span> ( posterior() ).set_rv ( rv ); 
    808 <a name="l01149"></a>01149         } 
    809 <a name="l01150"></a>01150         <span class="keywordtype">double</span> _ll()<span class="keyword"> const </span>{ 
    810 <a name="l01151"></a>01151                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; 
    811 <a name="l01152"></a>01152         } 
    812 <a name="l01153"></a>01153         <span class="keywordtype">void</span> set_evalll ( <span class="keywordtype">bool</span> evl0 ) { 
    813 <a name="l01154"></a>01154                 <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> = evl0; 
     798<a name="l01141"></a>01141  
     799<a name="l01145"></a>01145         <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; _drv()<span class="keyword"> const </span>{ 
     800<a name="l01146"></a>01146                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a>; 
     801<a name="l01147"></a>01147         } 
     802<a name="l01149"></a><a class="code" href="classbdm_1_1BM.html#af135ae6dce7e9f30c9f88229c7930b96">01149</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#af135ae6dce7e9f30c9f88229c7930b96" title="access function">set_drv</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv ) { 
     803<a name="l01150"></a>01150                 <a class="code" href="classbdm_1_1BM.html#ac400357e37d27a4834b2b1d9211009ed" title="Random variable of the data (optional).">drv</a> = rv; 
     804<a name="l01151"></a>01151         } 
     805<a name="l01153"></a><a class="code" href="classbdm_1_1BM.html#ab38d92f17620813ad872d86e01a26e5e">01153</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#ab38d92f17620813ad872d86e01a26e5e" title="access to rv of the posterior">set_rv</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rv ) { 
     806<a name="l01154"></a>01154                 <span class="keyword">const_cast&lt;</span><a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>&amp;<span class="keyword">&gt;</span> ( <a class="code" href="classbdm_1_1BM.html#abb7b0065d6cb722a66b371a8260121e1" title="return posterior density">posterior</a>() ).<a class="code" href="classbdm_1_1BM.html#ab38d92f17620813ad872d86e01a26e5e" title="access to rv of the posterior">set_rv</a> ( rv ); 
    814807<a name="l01155"></a>01155         } 
    815 <a name="l01156"></a>01156         <span class="keyword">virtual</span> <span class="keyword">const</span> epdf&amp; posterior() <span class="keyword">const</span> = 0; 
    816 <a name="l01158"></a>01158  
    817 <a name="l01161"></a>01161  
    818 <a name="l01163"></a><a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e">01163</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &amp;quot;logbounds,logll&amp;quot;.">set_options</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;opt ) { 
    819 <a name="l01164"></a>01164                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) = 1; 
    820 <a name="l01165"></a>01165                 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">&quot;logbounds&quot;</span> ) != string::npos ) { 
    821 <a name="l01166"></a>01166                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) = 1; 
    822 <a name="l01167"></a>01167                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) = 1; 
    823 <a name="l01168"></a>01168                 } 
    824 <a name="l01169"></a>01169                 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">&quot;logll&quot;</span> ) != string::npos ) { 
    825 <a name="l01170"></a>01170                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) = 1; 
    826 <a name="l01171"></a>01171                 } 
    827 <a name="l01172"></a>01172         } 
    828 <a name="l01174"></a><a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca">01174</a>         ivec <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>; 
    829 <a name="l01175"></a>01175  
    830 <a name="l01177"></a><a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207">01177</a>         ivec <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>; 
    831 <a name="l01179"></a><a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827">01179</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L, <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;name = <span class="stringliteral">&quot;&quot;</span> ) { 
    832 <a name="l01180"></a>01180                 <span class="comment">// internal</span> 
    833 <a name="l01181"></a>01181                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r; 
    834 <a name="l01182"></a>01182                 <span class="keywordflow">if</span> ( posterior().isnamed() ) { 
    835 <a name="l01183"></a>01183                         r = posterior().<a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>(); 
    836 <a name="l01184"></a>01184                 } <span class="keywordflow">else</span> { 
    837 <a name="l01185"></a>01185                         r = <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">&quot;est&quot;</span>, posterior().dimension() ); 
    838 <a name="l01186"></a>01186                 }; 
    839 <a name="l01187"></a>01187  
    840 <a name="l01188"></a>01188                 <span class="comment">// Add mean value</span> 
    841 <a name="l01189"></a>01189                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">&quot;mean_&quot;</span> ); 
    842 <a name="l01190"></a>01190                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">&quot;lb_&quot;</span> ); 
    843 <a name="l01191"></a>01191                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( r, name + <span class="stringliteral">&quot;ub_&quot;</span> ); 
    844 <a name="l01192"></a>01192                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">&quot;ll&quot;</span>, 1 ), name );    <span class="comment">//TODO: &quot;local&quot; RV</span> 
    845 <a name="l01193"></a>01193         } 
    846 <a name="l01195"></a><a class="code" href="classbdm_1_1BM.html#ab517e1679eaa94e803ea4cd0b8efbcd7">01195</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#ab517e1679eaa94e803ea4cd0b8efbcd7" title="Save results to the given logger, details of what is stored is configured by LIDs...">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) { 
    847 <a name="l01196"></a>01196                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ), posterior().mean() ); 
    848 <a name="l01197"></a>01197                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) || <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) ) {  <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span> 
    849 <a name="l01198"></a>01198                         vec ub, lb; 
    850 <a name="l01199"></a>01199                         posterior().<a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( lb, ub ); 
    851 <a name="l01200"></a>01200                         L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ), lb ); 
    852 <a name="l01201"></a>01201                         L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ), ub ); 
    853 <a name="l01202"></a>01202                 } 
    854 <a name="l01203"></a>01203                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) ) L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ); 
    855 <a name="l01204"></a>01204         } 
    856 <a name="l01206"></a><a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de">01206</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de" title="This method arrange instance properties according the data stored in the Setting...">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ) { 
    857 <a name="l01207"></a>01207                 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr&lt;RV&gt;</a> r = UI::build&lt;RV&gt; ( <span class="keyword">set</span>, <span class="stringliteral">&quot;drv&quot;</span>, UI::optional ); 
    858 <a name="l01208"></a>01208                 <span class="keywordflow">if</span> ( r ) { 
    859 <a name="l01209"></a>01209                         set_drv ( *r ); 
    860 <a name="l01210"></a>01210                 } 
    861 <a name="l01211"></a>01211                 <span class="keywordtype">string</span> opt; 
    862 <a name="l01212"></a>01212                 <span class="keywordflow">if</span> ( !<a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a> ( opt, <span class="keyword">set</span>, <span class="stringliteral">&quot;options&quot;</span>, UI::optional ) ) { 
    863 <a name="l01213"></a>01213                         <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &amp;quot;logbounds,logll&amp;quot;.">set_options</a> ( opt ); 
    864 <a name="l01214"></a>01214                 } 
    865 <a name="l01215"></a>01215         } 
    866 <a name="l01216"></a>01216  
    867 <a name="l01217"></a>01217 }; 
    868 <a name="l01218"></a>01218  
    869 <a name="l01219"></a>01219 <span class="keyword">typedef</span> Array&lt;shared_ptr&lt;epdf&gt; &gt; epdf_array; 
    870 <a name="l01220"></a>01220  
    871 <a name="l01221"></a>01221 <span class="keyword">typedef</span> Array&lt;shared_ptr&lt;mpdf&gt; &gt; mpdf_array; 
    872 <a name="l01222"></a>01222  
    873 <a name="l01223"></a>01223 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
    874 <a name="l01224"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930">01224</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">mpdf_internal&lt;EPDF&gt;::samplecond</a> ( <span class="keyword">const</span> vec &amp;cond ) { 
    875 <a name="l01225"></a>01225         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond ); 
    876 <a name="l01226"></a>01226         vec temp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample(); 
    877 <a name="l01227"></a>01227         <span class="keywordflow">return</span> temp; 
    878 <a name="l01228"></a>01228 } 
    879 <a name="l01229"></a>01229  
    880 <a name="l01230"></a>01230 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
    881 <a name="l01231"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823">01231</a> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">mpdf_internal&lt;EPDF&gt;::samplecond_m</a> ( <span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N ) { 
    882 <a name="l01232"></a>01232         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond ); 
    883 <a name="l01233"></a>01233         mat temp ( dimension(), N ); 
    884 <a name="l01234"></a>01234         vec smp ( dimension() ); 
    885 <a name="l01235"></a>01235         <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i &lt; N; i++ ) { 
    886 <a name="l01236"></a>01236                 smp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample(); 
    887 <a name="l01237"></a>01237                 temp.set_col ( i, smp ); 
    888 <a name="l01238"></a>01238         } 
    889 <a name="l01239"></a>01239  
    890 <a name="l01240"></a>01240         <span class="keywordflow">return</span> temp; 
    891 <a name="l01241"></a>01241 } 
    892 <a name="l01242"></a>01242  
    893 <a name="l01243"></a>01243 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
    894 <a name="l01244"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948">01244</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">mpdf_internal&lt;EPDF&gt;::evallogcond</a> ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;cond ) { 
    895 <a name="l01245"></a>01245         <span class="keywordtype">double</span> tmp; 
    896 <a name="l01246"></a>01246         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond ); 
    897 <a name="l01247"></a>01247         tmp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog ( dt ); 
    898 <a name="l01248"></a>01248         <span class="keywordflow">return</span> tmp; 
    899 <a name="l01249"></a>01249 } 
    900 <a name="l01250"></a>01250  
    901 <a name="l01251"></a>01251 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
    902 <a name="l01252"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c">01252</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal&lt;EPDF&gt;::evallogcond_m</a> ( <span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) { 
    903 <a name="l01253"></a>01253         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond ); 
    904 <a name="l01254"></a>01254         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m ( Dt ); 
    905 <a name="l01255"></a>01255 } 
    906 <a name="l01256"></a>01256  
    907 <a name="l01257"></a>01257 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
    908 <a name="l01258"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae82db07ce8af02f29cfd81e014edb3db">01258</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal&lt;EPDF&gt;::evallogcond_m</a> ( <span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) { 
    909 <a name="l01259"></a>01259         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e" title="Update iepdf so that it represents this mpdf conditioned on rvc = cond This function...">condition</a> ( cond ); 
    910 <a name="l01260"></a>01260         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m ( Dt ); 
    911 <a name="l01261"></a>01261 } 
    912 <a name="l01262"></a>01262  
    913 <a name="l01263"></a>01263 }; <span class="comment">//namespace</span> 
    914 <a name="l01264"></a>01264 <span class="preprocessor">#endif // BDMBASE_H</span> 
     808<a name="l01157"></a><a class="code" href="classbdm_1_1BM.html#a5be65d37dedfe33a3671e7065f523a70">01157</a>         <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1BM.html#a5be65d37dedfe33a3671e7065f523a70" title="return internal log-likelihood of the last data vector">_ll</a>()<span class="keyword"> const </span>{ 
     809<a name="l01158"></a>01158                 <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a>; 
     810<a name="l01159"></a>01159         } 
     811<a name="l01161"></a><a class="code" href="classbdm_1_1BM.html#a236b3abbcc93594fc97cd86d82c1a83f">01161</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a236b3abbcc93594fc97cd86d82c1a83f" title="switch evaluation of log-likelihood on/off">set_evalll</a> ( <span class="keywordtype">bool</span> evl0 ) { 
     812<a name="l01162"></a>01162                 <a class="code" href="classbdm_1_1BM.html#afaff0ad12556fe7dc0e2807d4fd938ee" title="If true, the filter will compute likelihood of the data record and store it in ll...">evalll</a> = evl0; 
     813<a name="l01163"></a>01163         } 
     814<a name="l01165"></a>01165         <span class="keyword">virtual</span> <span class="keyword">const</span> <a class="code" href="classbdm_1_1epdf.html" title="Probability density function with numerical statistics, e.g. posterior density.">epdf</a>&amp; <a class="code" href="classbdm_1_1BM.html#abb7b0065d6cb722a66b371a8260121e1" title="return posterior density">posterior</a>() <span class="keyword">const</span> = 0; 
     815<a name="l01167"></a>01167  
     816<a name="l01170"></a>01170  
     817<a name="l01172"></a><a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e">01172</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &amp;quot;logbounds,logll&amp;quot;.">set_options</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;opt ) { 
     818<a name="l01173"></a>01173                 <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) = 1; 
     819<a name="l01174"></a>01174                 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">&quot;logbounds&quot;</span> ) != string::npos ) { 
     820<a name="l01175"></a>01175                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) = 1; 
     821<a name="l01176"></a>01176                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) = 1; 
     822<a name="l01177"></a>01177                 } 
     823<a name="l01178"></a>01178                 <span class="keywordflow">if</span> ( opt.find ( <span class="stringliteral">&quot;logll&quot;</span> ) != string::npos ) { 
     824<a name="l01179"></a>01179                         <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) = 1; 
     825<a name="l01180"></a>01180                 } 
     826<a name="l01181"></a>01181         } 
     827<a name="l01183"></a><a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca">01183</a>         ivec <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a>; 
     828<a name="l01184"></a>01184  
     829<a name="l01186"></a><a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207">01186</a>         ivec <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a>; 
     830<a name="l01188"></a><a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827">01188</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a2298ca6af9b13a78a4c9e18ab43f1827" title="Add all logged variables to a logger.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L, <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;name = <span class="stringliteral">&quot;&quot;</span> ) { 
     831<a name="l01189"></a>01189                 <span class="comment">// internal</span> 
     832<a name="l01190"></a>01190                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> r; 
     833<a name="l01191"></a>01191                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#abb7b0065d6cb722a66b371a8260121e1" title="return posterior density">posterior</a>().isnamed() ) { 
     834<a name="l01192"></a>01192                         r = <a class="code" href="classbdm_1_1BM.html#abb7b0065d6cb722a66b371a8260121e1" title="return posterior density">posterior</a>().<a class="code" href="classbdm_1_1epdf.html#aa4ab378d5e004c3ff3e2d4e64f7bba21" title="Return name (fails when isnamed is false).">_rv</a>(); 
     835<a name="l01193"></a>01193                 } <span class="keywordflow">else</span> { 
     836<a name="l01194"></a>01194                         r = <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">&quot;est&quot;</span>, <a class="code" href="classbdm_1_1BM.html#abb7b0065d6cb722a66b371a8260121e1" title="return posterior density">posterior</a>().dimension() ); 
     837<a name="l01195"></a>01195                 }; 
     838<a name="l01196"></a>01196  
     839<a name="l01197"></a>01197                 <span class="comment">// Add mean value</span> 
     840<a name="l01198"></a>01198                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 0 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( r, name + <span class="stringliteral">&quot;mean_&quot;</span> ); 
     841<a name="l01199"></a>01199                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( r, name + <span class="stringliteral">&quot;lb_&quot;</span> ); 
     842<a name="l01200"></a>01200                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( r, name + <span class="stringliteral">&quot;ub_&quot;</span> ); 
     843<a name="l01201"></a>01201                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) ) <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ) = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">&quot;ll&quot;</span>, 1 ), name );    <span class="comment">//TODO: &quot;local&quot; RV</span> 
     844<a name="l01202"></a>01202         } 
     845<a name="l01204"></a><a class="code" href="classbdm_1_1BM.html#ab517e1679eaa94e803ea4cd0b8efbcd7">01204</a>         <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#ab517e1679eaa94e803ea4cd0b8efbcd7" title="Save results to the given logger, details of what is stored is configured by LIDs...">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) { 
     846<a name="l01205"></a>01205                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 0 ), <a class="code" href="classbdm_1_1BM.html#abb7b0065d6cb722a66b371a8260121e1" title="return posterior density">posterior</a>().mean() ); 
     847<a name="l01206"></a>01206                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 1 ) || <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 2 ) ) {  <span class="comment">//if one of them is off, its LID==-1 and will not be stored</span> 
     848<a name="l01207"></a>01207                         vec ub, lb; 
     849<a name="l01208"></a>01208                         <a class="code" href="classbdm_1_1BM.html#abb7b0065d6cb722a66b371a8260121e1" title="return posterior density">posterior</a>().<a class="code" href="classbdm_1_1epdf.html#a0a7705e80601957f7226d333a0a6d539" title="Lower and upper bounds of percentage % quantile, returns mean-2*sigma as default...">qbounds</a> ( lb, ub ); 
     850<a name="l01209"></a>01209                         L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 1 ), lb ); 
     851<a name="l01210"></a>01210                         L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 2 ), ub ); 
     852<a name="l01211"></a>01211                 } 
     853<a name="l01212"></a>01212                 <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1BM.html#a398b7e7a162cf37d0022d6126495f207" title="Flags for logging - same size as LIDs, each entry correspond to the same in LIDs...">LFlags</a> ( 3 ) ) L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1BM.html#a109c1a626a69031658e3a44e9e500cca" title="IDs of storages in loggers 4:[1=mean,2=lb,3=ub,4=ll].">LIDs</a> ( 3 ), <a class="code" href="classbdm_1_1BM.html#a4064b6559d962633e4372b12f4cd204a" title="Logarithm of marginalized data likelihood.">ll</a> ); 
     854<a name="l01213"></a>01213         } 
     855<a name="l01215"></a><a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de">01215</a>         <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1BM.html#a23c6a8f71f922023ab08dcb0487a86de" title="This method arrange instance properties according the data stored in the Setting...">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ) { 
     856<a name="l01216"></a>01216                 <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr&lt;RV&gt;</a> r = UI::build&lt;RV&gt; ( <span class="keyword">set</span>, <span class="stringliteral">&quot;drv&quot;</span>, UI::optional ); 
     857<a name="l01217"></a>01217                 <span class="keywordflow">if</span> ( r ) { 
     858<a name="l01218"></a>01218                         <a class="code" href="classbdm_1_1BM.html#af135ae6dce7e9f30c9f88229c7930b96" title="access function">set_drv</a> ( *r ); 
     859<a name="l01219"></a>01219                 } 
     860<a name="l01220"></a>01220                 <span class="keywordtype">string</span> opt; 
     861<a name="l01221"></a>01221                 <span class="keywordflow">if</span> ( !<a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a> ( opt, <span class="keyword">set</span>, <span class="stringliteral">&quot;options&quot;</span>, UI::optional ) ) { 
     862<a name="l01222"></a>01222                         <a class="code" href="classbdm_1_1BM.html#aadb539fa2585c8a2a91c54e5aebf330e" title="Set boolean options from a string, recognized are: &amp;quot;logbounds,logll&amp;quot;.">set_options</a> ( opt ); 
     863<a name="l01223"></a>01223                 } 
     864<a name="l01224"></a>01224         } 
     865<a name="l01225"></a>01225  
     866<a name="l01226"></a>01226 }; 
     867<a name="l01228"></a>01228 <span class="keyword">typedef</span> Array&lt;shared_ptr&lt;epdf&gt; &gt; epdf_array; 
     868<a name="l01230"></a>01230 <span class="keyword">typedef</span> Array&lt;shared_ptr&lt;mpdf&gt; &gt; mpdf_array; 
     869<a name="l01231"></a>01231  
     870<a name="l01232"></a>01232 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
     871<a name="l01233"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930">01233</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ad8e547695d1cc19219b91164d825c930" title="Reimplements samplecond using condition().">mpdf_internal&lt;EPDF&gt;::samplecond</a> ( <span class="keyword">const</span> vec &amp;cond ) { 
     872<a name="l01234"></a>01234         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> ( cond ); 
     873<a name="l01235"></a>01235         vec temp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample(); 
     874<a name="l01236"></a>01236         <span class="keywordflow">return</span> temp; 
     875<a name="l01237"></a>01237 } 
     876<a name="l01238"></a>01238  
     877<a name="l01239"></a>01239 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
     878<a name="l01240"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823">01240</a> mat <a class="code" href="classbdm_1_1mpdf__internal.html#a9554c554054da2d22cb8e908ae9c8823" title="Efficient version of samplecond.">mpdf_internal&lt;EPDF&gt;::samplecond_m</a> ( <span class="keyword">const</span> vec &amp;cond, <span class="keywordtype">int</span> N ) { 
     879<a name="l01241"></a>01241         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> ( cond ); 
     880<a name="l01242"></a>01242         mat temp ( dimension(), N ); 
     881<a name="l01243"></a>01243         vec smp ( dimension() ); 
     882<a name="l01244"></a>01244         <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = 0; i &lt; N; i++ ) { 
     883<a name="l01245"></a>01245                 smp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.sample(); 
     884<a name="l01246"></a>01246                 temp.set_col ( i, smp ); 
     885<a name="l01247"></a>01247         } 
     886<a name="l01248"></a>01248  
     887<a name="l01249"></a>01249         <span class="keywordflow">return</span> temp; 
     888<a name="l01250"></a>01250 } 
     889<a name="l01251"></a>01251  
     890<a name="l01252"></a>01252 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
     891<a name="l01253"></a><a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948">01253</a> <span class="keywordtype">double</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a89076e62b8d7df7616bad68c94591948" title="Reimplements evallogcond using condition().">mpdf_internal&lt;EPDF&gt;::evallogcond</a> ( <span class="keyword">const</span> vec &amp;dt, <span class="keyword">const</span> vec &amp;cond ) { 
     892<a name="l01254"></a>01254         <span class="keywordtype">double</span> tmp; 
     893<a name="l01255"></a>01255         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> ( cond ); 
     894<a name="l01256"></a>01256         tmp = <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog ( dt ); 
     895<a name="l01257"></a>01257         <span class="keywordflow">return</span> tmp; 
     896<a name="l01258"></a>01258 } 
     897<a name="l01259"></a>01259  
     898<a name="l01260"></a>01260 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
     899<a name="l01261"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c">01261</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal&lt;EPDF&gt;::evallogcond_m</a> ( <span class="keyword">const</span> mat &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) { 
     900<a name="l01262"></a>01262         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> ( cond ); 
     901<a name="l01263"></a>01263         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m ( Dt ); 
     902<a name="l01264"></a>01264 } 
     903<a name="l01265"></a>01265  
     904<a name="l01266"></a>01266 <span class="keyword">template</span>&lt;<span class="keyword">class</span> EPDF&gt; 
     905<a name="l01267"></a><a class="code" href="classbdm_1_1mpdf__internal.html#ae82db07ce8af02f29cfd81e014edb3db">01267</a> vec <a class="code" href="classbdm_1_1mpdf__internal.html#ae28c214e3063733a6e4d17738941c61c" title="Efficient version of evallogcond for matrices.">mpdf_internal&lt;EPDF&gt;::evallogcond_m</a> ( <span class="keyword">const</span> Array&lt;vec&gt; &amp;Dt, <span class="keyword">const</span> vec &amp;cond ) { 
     906<a name="l01268"></a>01268         <a class="code" href="classbdm_1_1mpdf__internal.html#a1ac61da081667fc54bcd050cc4f6a93e">condition</a> ( cond ); 
     907<a name="l01269"></a>01269         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1mpdf__internal.html#a47bab632af15120c88aad647ae129468" title="Internal epdf used for sampling.">iepdf</a>.evallog_m ( Dt ); 
     908<a name="l01270"></a>01270 } 
     909<a name="l01271"></a>01271  
     910<a name="l01272"></a>01272 }; <span class="comment">//namespace</span> 
     911<a name="l01273"></a>01273 <span class="preprocessor">#endif // BDMBASE_H</span> 
    915912</pre></div></div> 
    916 <hr size="1"/><address style="text-align: right;"><small>Generated on Mon Oct 12 19:37:19 2009 for mixpp by&nbsp; 
     913<hr size="1"/><address style="text-align: right;"><small>Generated on Thu Oct 15 00:07:48 2009 for mixpp by&nbsp; 
    917914<a href="http://www.doxygen.org/index.html"> 
    918915<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>