Index: library/doc/html/classbdm_1_1EKFful__unQR.html
===================================================================
--- library/doc/html/classbdm_1_1EKFful__unQR.html (revision 656)
+++ library/doc/html/classbdm_1_1EKFful__unQR.html (revision 661)
@@ -89,5 +89,6 @@
 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Set nonlinear functions for mean values and covariance matrices. <br/></td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a7a053883a11a93a979c28c3e6792ce20"></a><!-- doxytag: member="bdm::EKFful_unQR::set_parameters" ref="a7a053883a11a93a979c28c3e6792ce20" args="(const mat &amp;A0, const mat &amp;B0, const mat &amp;C0, const mat &amp;D0, const fsqmat &amp;Q0, const fsqmat &amp;R0)" -->
-void&nbsp;</td><td class="memItemRight" valign="bottom"><b>set_parameters</b> (const mat &amp;A0, const mat &amp;B0, const mat &amp;C0, const mat &amp;D0, const <a class="el" href="classbdm_1_1fsqmat.html">fsqmat</a> &amp;Q0, const <a class="el" href="classbdm_1_1fsqmat.html">fsqmat</a> &amp;R0)</td></tr>
+void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1StateSpace.html#a7a053883a11a93a979c28c3e6792ce20">set_parameters</a> (const mat &amp;A0, const mat &amp;B0, const mat &amp;C0, const mat &amp;D0, const <a class="el" href="classbdm_1_1fsqmat.html">fsqmat</a> &amp;Q0, const <a class="el" href="classbdm_1_1fsqmat.html">fsqmat</a> &amp;R0)</td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">set all matrix parameters <br/></td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="af149ae8e9ce14d9931a7bb2850736699"></a><!-- doxytag: member="bdm::EKFful_unQR::bayes" ref="af149ae8e9ce14d9931a7bb2850736699" args="(const vec &amp;dt)" -->
 void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1EKFfull.html#af149ae8e9ce14d9931a7bb2850736699">bayes</a> (const vec &amp;dt)</td></tr>
@@ -97,7 +98,9 @@
 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">set estimates <br/></td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a28cded9e5f44f654cd383503e4e9694c"></a><!-- doxytag: member="bdm::EKFful_unQR::set_statistics" ref="a28cded9e5f44f654cd383503e4e9694c" args="(const vec &amp;mu0, const fsqmat &amp;P0)" -->
-void&nbsp;</td><td class="memItemRight" valign="bottom"><b>set_statistics</b> (const vec &amp;mu0, const <a class="el" href="classbdm_1_1fsqmat.html">fsqmat</a> &amp;P0)</td></tr>
+void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1Kalman.html#a28cded9e5f44f654cd383503e4e9694c">set_statistics</a> (const vec &amp;mu0, const <a class="el" href="classbdm_1_1fsqmat.html">fsqmat</a> &amp;P0)</td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">set statistics of the posterior <br/></td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ad4f57cb8af64b06c530f528c32596d4d"></a><!-- doxytag: member="bdm::EKFful_unQR::_R" ref="ad4f57cb8af64b06c530f528c32596d4d" args="()" -->
-const mat&nbsp;</td><td class="memItemRight" valign="bottom"><b>_R</b> ()</td></tr>
+const mat&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1EKFfull.html#ad4f57cb8af64b06c530f528c32596d4d">_R</a> ()</td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">access function <br/></td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a69ddac45b7a4efbf83b2232d0d5595ba"></a><!-- doxytag: member="bdm::EKFful_unQR::_R" ref="a69ddac45b7a4efbf83b2232d0d5595ba" args="() const" -->
 const <a class="el" href="classbdm_1_1fsqmat.html">fsqmat</a> &amp;&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1StateSpace.html#a69ddac45b7a4efbf83b2232d0d5595ba">_R</a> () const</td></tr>
@@ -107,10 +110,11 @@
 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">load basic elements of <a class="el" href="classbdm_1_1Kalman.html" title="Common abstract base for Kalman filters.">Kalman</a> from structure <br/></td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a167aa6b713df5cd2ce3df78ddcfd02a4"></a><!-- doxytag: member="bdm::EKFful_unQR::validate" ref="a167aa6b713df5cd2ce3df78ddcfd02a4" args="()" -->
-void&nbsp;</td><td class="memItemRight" valign="bottom"><b>validate</b> ()</td></tr>
+void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1EKFfull.html#a167aa6b713df5cd2ce3df78ddcfd02a4">validate</a> ()</td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">validate object <br/></td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="el" href="classbdm_1_1BM.html">BM</a> *&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1KalmanFull.html#ab77ade422273f60b8955122b81abf3c1">_copy_</a> () const </td></tr>
 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Copy function required in vectors, Arrays of <a class="el" href="classbdm_1_1BM.html" title="Bayesian Model of a system, i.e. all uncertainty is modeled by probabilities.">BM</a> etc. Have to be DELETED manually! Prototype:.  <a href="#ab77ade422273f60b8955122b81abf3c1"></a><br/></td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a8b0c3db41eb292edb20b826832c9b5fa"></a><!-- doxytag: member="bdm::EKFful_unQR::posterior" ref="a8b0c3db41eb292edb20b826832c9b5fa" args="() const" -->
 const <a class="el" href="classbdm_1_1enorm.html">enorm</a>&lt; <a class="el" href="classbdm_1_1fsqmat.html">fsqmat</a> &gt; &amp;&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1Kalman.html#a8b0c3db41eb292edb20b826832c9b5fa">posterior</a> () const</td></tr>
-<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">posterior <br/></td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">return correctly typed posterior (covariant return) <br/></td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a4da2fdd01e9b335b133def9814eb0620"></a><!-- doxytag: member="bdm::EKFful_unQR::shared_posterior" ref="a4da2fdd01e9b335b133def9814eb0620" args="()" -->
 <a class="el" href="classbdm_1_1shared__ptr.html">shared_ptr</a>&lt; <a class="el" href="classbdm_1_1epdf.html">epdf</a> &gt;&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1Kalman.html#a4da2fdd01e9b335b133def9814eb0620">shared_posterior</a> ()</td></tr>
@@ -163,16 +167,20 @@
 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Constructs conditional density of 1-step ahead predictor <img class="formulaInl" alt="$ f(d_{t+1} |d_{t+h-1}, \ldots d_{t}) $" src="form_21.png"/>. <br/></td></tr>
 <tr><td colspan="2"><div class="groupHeader">Access to attributes</div></td></tr>
-<tr><td colspan="2"><div class="groupText"><p><a class="anchor" id="amgrpb6eb094f9e6af11f8a7d9efa9d8e3623"></a> </p>
+<tr><td colspan="2"><div class="groupText"><p><a class="anchor" id="amgrpb6eb094f9e6af11f8a7d9efa9d8e3623"></a> access function </p>
 <br/><br/></div></td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="aff2d8755ba0b3def927d31305c03b09c"></a><!-- doxytag: member="bdm::EKFful_unQR::_drv" ref="aff2d8755ba0b3def927d31305c03b09c" args="() const " -->
 const <a class="el" href="classbdm_1_1RV.html">RV</a> &amp;&nbsp;</td><td class="memItemRight" valign="bottom"><b>_drv</b> () const </td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="af135ae6dce7e9f30c9f88229c7930b96"></a><!-- doxytag: member="bdm::EKFful_unQR::set_drv" ref="af135ae6dce7e9f30c9f88229c7930b96" args="(const RV &amp;rv)" -->
-void&nbsp;</td><td class="memItemRight" valign="bottom"><b>set_drv</b> (const <a class="el" href="classbdm_1_1RV.html">RV</a> &amp;rv)</td></tr>
+void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1BM.html#af135ae6dce7e9f30c9f88229c7930b96">set_drv</a> (const <a class="el" href="classbdm_1_1RV.html">RV</a> &amp;rv)</td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">access function <br/></td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ab38d92f17620813ad872d86e01a26e5e"></a><!-- doxytag: member="bdm::EKFful_unQR::set_rv" ref="ab38d92f17620813ad872d86e01a26e5e" args="(const RV &amp;rv)" -->
-void&nbsp;</td><td class="memItemRight" valign="bottom"><b>set_rv</b> (const <a class="el" href="classbdm_1_1RV.html">RV</a> &amp;rv)</td></tr>
+void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1BM.html#ab38d92f17620813ad872d86e01a26e5e">set_rv</a> (const <a class="el" href="classbdm_1_1RV.html">RV</a> &amp;rv)</td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">access to rv of the posterior <br/></td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a5be65d37dedfe33a3671e7065f523a70"></a><!-- doxytag: member="bdm::EKFful_unQR::_ll" ref="a5be65d37dedfe33a3671e7065f523a70" args="() const " -->
-double&nbsp;</td><td class="memItemRight" valign="bottom"><b>_ll</b> () const </td></tr>
+double&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1BM.html#a5be65d37dedfe33a3671e7065f523a70">_ll</a> () const </td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">return internal log-likelihood of the last data vector <br/></td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a236b3abbcc93594fc97cd86d82c1a83f"></a><!-- doxytag: member="bdm::EKFful_unQR::set_evalll" ref="a236b3abbcc93594fc97cd86d82c1a83f" args="(bool evl0)" -->
-void&nbsp;</td><td class="memItemRight" valign="bottom"><b>set_evalll</b> (bool evl0)</td></tr>
+void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="classbdm_1_1BM.html#a236b3abbcc93594fc97cd86d82c1a83f">set_evalll</a> (bool evl0)</td></tr>
+<tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">switch evaluation of log-likelihood on/off <br/></td></tr>
 <tr><td colspan="2"><h2>Protected Attributes</h2></td></tr>
 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="aee5bfb3f09dfa994596c5bc68306f7d6"></a><!-- doxytag: member="bdm::EKFful_unQR::pfxu" ref="aee5bfb3f09dfa994596c5bc68306f7d6" args="" -->
@@ -282,5 +290,5 @@
 <p>Reimplemented from <a class="el" href="classbdm_1_1BM.html#a40f01563651c1e4fe926189e41a6b8ab">bdm::BM</a>.</p>
 
-<p>References <a class="el" href="kalman_8h_source.html#l00043">bdm::StateSpace&lt; fsqmat &gt;::A</a>, <a class="el" href="kalman_8h_source.html#l00045">bdm::StateSpace&lt; fsqmat &gt;::B</a>, <a class="el" href="kalman_8h_source.html#l00047">bdm::StateSpace&lt; fsqmat &gt;::C</a>, <a class="el" href="kalman_8h_source.html#l00049">bdm::StateSpace&lt; fsqmat &gt;::D</a>, <a class="el" href="kalman_8h_source.html#l00113">bdm::Kalman&lt; fsqmat &gt;::est</a>, <a class="el" href="kalman_8h_source.html#l00051">bdm::StateSpace&lt; fsqmat &gt;::Q</a>, and <a class="el" href="kalman_8h_source.html#l00053">bdm::StateSpace&lt; fsqmat &gt;::R</a>.</p>
+<p>References <a class="el" href="kalman_8h_source.html#l00043">bdm::StateSpace&lt; fsqmat &gt;::A</a>, <a class="el" href="kalman_8h_source.html#l00045">bdm::StateSpace&lt; fsqmat &gt;::B</a>, <a class="el" href="kalman_8h_source.html#l00047">bdm::StateSpace&lt; fsqmat &gt;::C</a>, <a class="el" href="kalman_8h_source.html#l00049">bdm::StateSpace&lt; fsqmat &gt;::D</a>, <a class="el" href="kalman_8h_source.html#l00116">bdm::Kalman&lt; fsqmat &gt;::est</a>, <a class="el" href="kalman_8h_source.html#l00051">bdm::StateSpace&lt; fsqmat &gt;::Q</a>, <a class="el" href="kalman_8h_source.html#l00053">bdm::StateSpace&lt; fsqmat &gt;::R</a>, <a class="el" href="kalman_8h_source.html#l00526">bdm::StateSpace&lt; sq_T &gt;::set_parameters()</a>, and <a class="el" href="kalman_8h_source.html#l00124">bdm::Kalman&lt; sq_T &gt;::set_statistics()</a>.</p>
 
 </div>
@@ -307,5 +315,5 @@
 <p>References <a class="el" href="bdmerror_8h_source.html#l00051">bdm_error</a>.</p>
 
-<p>Referenced by <a class="el" href="bdmbase_8h_source.html#l01098">bdm::BM::logpred_m()</a>.</p>
+<p>Referenced by <a class="el" href="bdmbase_8h_source.html#l01102">bdm::BM::logpred_m()</a>.</p>
 
 </div>
@@ -315,5 +323,5 @@
 </ul>
 </div>
-<hr size="1"/><address style="text-align: right;"><small>Generated on Mon Oct 12 19:37:21 2009 for mixpp by&nbsp;
+<hr size="1"/><address style="text-align: right;"><small>Generated on Thu Oct 15 00:07:49 2009 for mixpp by&nbsp;
 <a href="http://www.doxygen.org/index.html">
 <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>
