Index: library/doc/html/datasources_8h_source.html
===================================================================
--- library/doc/html/datasources_8h_source.html (revision 656)
+++ library/doc/html/datasources_8h_source.html (revision 661)
@@ -85,11 +85,11 @@
 <a name="l00040"></a>00040                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MemDS.html#a23522b9e7dd0bb0c365cc9cde4c05449" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt );
 <a name="l00041"></a>00041                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MemDS.html#a23522b9e7dd0bb0c365cc9cde4c05449" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt, <span class="keyword">const</span> ivec &amp;indeces );
-<a name="l00042"></a>00042                 <span class="keywordtype">void</span> set_rvs ( <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;drv, <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;urv );
+<a name="l00042"></a>00042                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MemDS.html#ae0796d428a29a0393173b453a6bb44b7" title="set random variables">set_drv</a> (<span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;drv,<span class="keyword">const</span>  <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;urv );
 <a name="l00043"></a>00043 
-<a name="l00044"></a><a class="code" href="classbdm_1_1MemDS.html#a9a7f17598fe2b458707ba932865beef5">00044</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MemDS.html#a9a7f17598fe2b458707ba932865beef5" title="Accepts action variable and schedule it for application.">write</a> ( vec &amp;ut ) {
+<a name="l00044"></a><a class="code" href="classbdm_1_1MemDS.html#a804e92e86e6417d17214b2c9991e271d">00044</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MemDS.html#a804e92e86e6417d17214b2c9991e271d" title="Accepts action variable and schedule it for application.">write</a> ( <span class="keyword">const</span> vec &amp;ut ) {
 <a name="l00045"></a>00045                         <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;MemDS::write is not supported&quot;</span> );
 <a name="l00046"></a>00046                 }
 <a name="l00047"></a>00047 
-<a name="l00048"></a>00048                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MemDS.html#a9a7f17598fe2b458707ba932865beef5" title="Accepts action variable and schedule it for application.">write</a> ( vec &amp;ut, ivec &amp;indices ) {
+<a name="l00048"></a><a class="code" href="classbdm_1_1MemDS.html#a58d81dfe567ecd2cc32f500b038dcedf">00048</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MemDS.html#a58d81dfe567ecd2cc32f500b038dcedf" title="Accepts action variables at specific indeces.">write</a> ( <span class="keyword">const</span> vec &amp;ut, <span class="keyword">const</span> ivec &amp;indices ) {
 <a name="l00049"></a>00049                         <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a> ( <span class="stringliteral">&quot;MemDS::write is not supported&quot;</span> );
 <a name="l00050"></a>00050                 }
@@ -97,322 +97,227 @@
 <a name="l00052"></a>00052                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MemDS.html#a21916feb3e5ff960855c09b06a0d279b" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>();
 <a name="l00054"></a><a class="code" href="classbdm_1_1MemDS.html#a1ea231f4066652996cde4826560d93e3">00054</a>                 <a class="code" href="classbdm_1_1MemDS.html#a1ea231f4066652996cde4826560d93e3" title="Default constructor.">MemDS</a> () {};
-<a name="l00055"></a>00055                 <a class="code" href="classbdm_1_1MemDS.html#a1ea231f4066652996cde4826560d93e3" title="Default constructor.">MemDS</a> ( mat &amp;Dat, ivec &amp;rowid0);
-<a name="l00080"></a><a class="code" href="classbdm_1_1MemDS.html#afaebfe6d7a2a43421be05d8cf7d7ae45">00080</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MemDS.html#afaebfe6d7a2a43421be05d8cf7d7ae45">from_setting</a>(<span class="keyword">const</span> Setting &amp;<span class="keyword">set</span>){
-<a name="l00081"></a>00081                         <a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a>(<a class="code" href="classbdm_1_1MemDS.html#aa724f4cbfc32e79bacc044253234e260" title="internal matrix of data">Data</a>, <span class="keyword">set</span>, <span class="stringliteral">&quot;Data&quot;</span>, UI::compulsory);
-<a name="l00082"></a>00082                         <span class="keywordflow">if</span>(!<a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a>(<a class="code" href="classbdm_1_1MemDS.html#a681ee3831f68f4f20ed54e04e8b3f107" title="active column in the Data matrix">time</a>, <span class="keyword">set</span>,<span class="stringliteral">&quot;time&quot;</span>, UI::optional)) {<a class="code" href="classbdm_1_1MemDS.html#a681ee3831f68f4f20ed54e04e8b3f107" title="active column in the Data matrix">time</a> =0;}
-<a name="l00083"></a>00083                         <span class="keywordflow">if</span>(!<a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a>(<a class="code" href="classbdm_1_1MemDS.html#a865814d49913dcf672bb20a4334d3dc4" title="vector of rows that are presented in Dt">rowid</a>, <span class="keyword">set</span>, <span class="stringliteral">&quot;rowid&quot;</span>,UI::optional)) {<a class="code" href="classbdm_1_1MemDS.html#a865814d49913dcf672bb20a4334d3dc4" title="vector of rows that are presented in Dt">rowid</a> =linspace(0,<a class="code" href="classbdm_1_1MemDS.html#aa724f4cbfc32e79bacc044253234e260" title="internal matrix of data">Data</a>.rows()-1);}
-<a name="l00084"></a>00084                         <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr&lt;RV&gt;</a> r=UI::build&lt;RV&gt;(<span class="keyword">set</span>,<span class="stringliteral">&quot;drv&quot;</span>,UI::optional);
-<a name="l00085"></a>00085                         <span class="keywordflow">if</span> (!r) {r=<span class="keyword">new</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>();
-<a name="l00086"></a>00086                                 <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i=0; i&lt;<a class="code" href="classbdm_1_1MemDS.html#a865814d49913dcf672bb20a4334d3dc4" title="vector of rows that are presented in Dt">rowid</a>.length(); i++){ r-&gt;add(<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>(<span class="stringliteral">&quot;ch&quot;</span>+num2str(<a class="code" href="classbdm_1_1MemDS.html#a865814d49913dcf672bb20a4334d3dc4" title="vector of rows that are presented in Dt">rowid</a>(i)), 1, 0));}
-<a name="l00087"></a>00087                         }
-<a name="l00088"></a>00088                         <a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc" title="set random variables">set_drv</a>(*r,<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>()); <span class="comment">//empty urv</span>
-<a name="l00089"></a>00089                         <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a>=r-&gt;_dsize();
-<a name="l00090"></a>00090                         <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>=0;
-<a name="l00091"></a>00091                 }
-<a name="l00092"></a>00092 };
-<a name="l00093"></a>00093 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a>(MemDS);
-<a name="l00094"></a>00094 
-<a name="l00100"></a><a class="code" href="classbdm_1_1EpdfDS.html">00100</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1EpdfDS.html" title="Simulate data from a static pdf (epdf).">EpdfDS</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> {
-<a name="l00101"></a>00101         <span class="keyword">protected</span>:
-<a name="l00103"></a><a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5">00103</a>                 <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> <a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>;
-<a name="l00105"></a><a class="code" href="classbdm_1_1EpdfDS.html#a67637d64bcabf6ecb4a80284dc60dc3f">00105</a>                 vec <a class="code" href="classbdm_1_1EpdfDS.html#a67637d64bcabf6ecb4a80284dc60dc3f" title="internal storage of data sample">dt</a>;
-<a name="l00106"></a>00106         <span class="keyword">public</span>:
-<a name="l00107"></a><a class="code" href="classbdm_1_1EpdfDS.html#aa1bd25d052dd50da9854d78e2f2096d0">00107</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1EpdfDS.html#aa1bd25d052dd50da9854d78e2f2096d0" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>() {
-<a name="l00108"></a>00108                         <a class="code" href="classbdm_1_1EpdfDS.html#a67637d64bcabf6ecb4a80284dc60dc3f" title="internal storage of data sample">dt</a>=<a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>-&gt;sample();
-<a name="l00109"></a>00109                 }
-<a name="l00110"></a><a class="code" href="classbdm_1_1EpdfDS.html#a62c4a9d343dd773c4e75b5f2338b9ba7">00110</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1EpdfDS.html#a62c4a9d343dd773c4e75b5f2338b9ba7" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt_out ) {
-<a name="l00111"></a>00111                         dt_out = <a class="code" href="classbdm_1_1EpdfDS.html#a67637d64bcabf6ecb4a80284dc60dc3f" title="internal storage of data sample">dt</a>;
-<a name="l00112"></a>00112                 }
-<a name="l00113"></a><a class="code" href="classbdm_1_1EpdfDS.html#a5b3d9370351ca393d4df6f6da6ac5f99">00113</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1EpdfDS.html#a5b3d9370351ca393d4df6f6da6ac5f99" title="Returns data records at indeces.">getdata</a> ( vec &amp;dt_out, <span class="keyword">const</span> ivec &amp;ids ) {
-<a name="l00114"></a>00114                         dt_out = <a class="code" href="classbdm_1_1EpdfDS.html#a67637d64bcabf6ecb4a80284dc60dc3f" title="internal storage of data sample">dt</a> ( ids );
-<a name="l00115"></a>00115                 }
-<a name="l00116"></a>00116                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; _drv() {
-<a name="l00117"></a>00117                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>-&gt;_rv();
-<a name="l00118"></a>00118                 }
-<a name="l00119"></a>00119 
-<a name="l00127"></a><a class="code" href="classbdm_1_1EpdfDS.html#a3fdfb570b5d12332b2ba5662d17badac">00127</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1EpdfDS.html#a3fdfb570b5d12332b2ba5662d17badac">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ) {
-<a name="l00128"></a>00128                         <a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>=UI::build&lt;epdf&gt; ( <span class="keyword">set</span>,<span class="stringliteral">&quot;epdf&quot;</span>,UI::compulsory );
-<a name="l00129"></a>00129                         <a class="code" href="bdmerror_8h.html#a7a3399d182b8e3065532596e76f84849" title="Throw std::runtime_exception if t is not true.">bdm_assert</a>(<a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>-&gt;isnamed(), <span class="stringliteral">&quot;Input epdf must be named, check if RV is given correctly&quot;</span>);
-<a name="l00130"></a>00130                         <a class="code" href="classbdm_1_1EpdfDS.html#a67637d64bcabf6ecb4a80284dc60dc3f" title="internal storage of data sample">dt</a> =  zeros(<a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>-&gt;dimension());
-<a name="l00131"></a>00131                         <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a>=dt.length();
-<a name="l00132"></a>00132                         <a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc" title="set random variables">set_drv</a>(<a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>-&gt;_rv(),<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>());
-<a name="l00133"></a>00133                         <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> =0;
-<a name="l00134"></a>00134                         <a class="code" href="classbdm_1_1EpdfDS.html#a0a35af977871319479542183fde6a647" title="This method TODO.">validate</a>();
-<a name="l00135"></a>00135                 }
-<a name="l00136"></a><a class="code" href="classbdm_1_1EpdfDS.html#a0a35af977871319479542183fde6a647">00136</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1EpdfDS.html#a0a35af977871319479542183fde6a647" title="This method TODO.">validate</a>() {
-<a name="l00137"></a>00137                         <a class="code" href="classbdm_1_1EpdfDS.html#a67637d64bcabf6ecb4a80284dc60dc3f" title="internal storage of data sample">dt</a> = <a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>-&gt;sample();
-<a name="l00138"></a>00138                 }
-<a name="l00139"></a>00139 };
-<a name="l00140"></a>00140 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( EpdfDS );
-<a name="l00141"></a>00141 
-<a name="l00145"></a><a class="code" href="classbdm_1_1MpdfDS.html">00145</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1MpdfDS.html" title="Simulate data from conditional density Still having only one density but allowing...">MpdfDS</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> {
-<a name="l00146"></a>00146         <span class="keyword">protected</span>:
-<a name="l00148"></a><a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac">00148</a>                 <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;mpdf&gt;</a> <a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>;
-<a name="l00150"></a><a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082">00150</a>                 vec <a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>;
-<a name="l00152"></a><a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417">00152</a>                 vec <a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417" title="input vector">ut</a>;
-<a name="l00154"></a><a class="code" href="classbdm_1_1MpdfDS.html#a54e70167144e692877e7b49633219d5a">00154</a>                 <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> <a class="code" href="classbdm_1_1MpdfDS.html#a54e70167144e692877e7b49633219d5a" title="datalink between ut and regressor">ut2rgr</a>;
-<a name="l00156"></a><a class="code" href="classbdm_1_1MpdfDS.html#a6ccbcf01b1cd5bd3500aefc3091d9a2b">00156</a>                 <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> <a class="code" href="classbdm_1_1MpdfDS.html#a6ccbcf01b1cd5bd3500aefc3091d9a2b" title="datalink between yt and regressor">yt2rgr</a>;
-<a name="l00158"></a><a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e">00158</a>                 vec <a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a>;
-<a name="l00159"></a>00159                 
-<a name="l00160"></a>00160         <span class="keyword">public</span>:
-<a name="l00161"></a><a class="code" href="classbdm_1_1MpdfDS.html#a9dfd98688d14f647c613bf63a95a19b6">00161</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MpdfDS.html#a9dfd98688d14f647c613bf63a95a19b6" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>() {
-<a name="l00162"></a>00162                         <a class="code" href="classbdm_1_1MpdfDS.html#a6ccbcf01b1cd5bd3500aefc3091d9a2b" title="datalink between yt and regressor">yt2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f" title="push current data to history">step</a>(<a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>); <span class="comment">// y is now history</span>
-<a name="l00163"></a>00163                         <a class="code" href="classbdm_1_1MpdfDS.html#a54e70167144e692877e7b49633219d5a" title="datalink between ut and regressor">ut2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417" title="input vector">ut</a>,<a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a> );
-<a name="l00164"></a>00164                         <a class="code" href="classbdm_1_1MpdfDS.html#a6ccbcf01b1cd5bd3500aefc3091d9a2b" title="datalink between yt and regressor">yt2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>,<a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a> );
-<a name="l00165"></a>00165                         <a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>=<a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;samplecond ( <a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a> );
-<a name="l00166"></a>00166                         <a class="code" href="classbdm_1_1MpdfDS.html#a54e70167144e692877e7b49633219d5a" title="datalink between ut and regressor">ut2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f" title="push current data to history">step</a>(<a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417" title="input vector">ut</a>); <span class="comment">//u is now history</span>
-<a name="l00167"></a>00167                 }
-<a name="l00168"></a><a class="code" href="classbdm_1_1MpdfDS.html#a8752dbb56c269353cd5135349b4f8408">00168</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MpdfDS.html#a8752dbb56c269353cd5135349b4f8408" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt_out ) {
-<a name="l00169"></a>00169                         <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a>(dt_out.length()&gt;=<a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>+<a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd" title="size of output">ytsize</a>,<span class="stringliteral">&quot;Short output vector&quot;</span>);
-<a name="l00170"></a>00170                         dt_out.set_subvector(0, <a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>);
-<a name="l00171"></a>00171                         dt_out.set_subvector(ytsize, <a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417" title="input vector">ut</a>);
-<a name="l00172"></a>00172                 }
-<a name="l00173"></a>00173                 <span class="keywordtype">void</span> write(<span class="keyword">const</span> vec &amp;ut0){<a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417" title="input vector">ut</a>=ut0;}
-<a name="l00174"></a>00174 
-<a name="l00186"></a><a class="code" href="classbdm_1_1MpdfDS.html#a39ef55fb36da354c93c544129e03f558">00186</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MpdfDS.html#a39ef55fb36da354c93c544129e03f558">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ) {
-<a name="l00187"></a>00187                         <a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>=UI::build&lt;mpdf&gt; ( <span class="keyword">set</span>,<span class="stringliteral">&quot;mpdf&quot;</span>,UI::compulsory );
-<a name="l00188"></a>00188                         
-<a name="l00189"></a>00189                         <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a> = <a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;_rv();
-<a name="l00190"></a>00190                         <span class="comment">// get unique rvs form rvc</span>
-<a name="l00191"></a>00191                         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rgrv0=<a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;_rvc().remove_time();
-<a name="l00192"></a>00192                         <span class="comment">// input is what in not in Yrv</span>
-<a name="l00193"></a>00193                         <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>=rgrv0.<a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a>(Yrv); 
-<a name="l00194"></a>00194                         <a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc" title="set random variables">set_drv</a>(Yrv, <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>);
-<a name="l00195"></a>00195                         <span class="comment">// connect input and output to rvc</span>
-<a name="l00196"></a>00196                         <a class="code" href="classbdm_1_1MpdfDS.html#a54e70167144e692877e7b49633219d5a" title="datalink between ut and regressor">ut2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a>(<a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;_rvc(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>); 
-<a name="l00197"></a>00197                         <a class="code" href="classbdm_1_1MpdfDS.html#a6ccbcf01b1cd5bd3500aefc3091d9a2b" title="datalink between yt and regressor">yt2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a>(<a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;_rvc(), Yrv); 
-<a name="l00198"></a>00198                         
-<a name="l00199"></a>00199                         <span class="comment">//set history - if given</span>
-<a name="l00200"></a>00200                         <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr&lt;RV&gt;</a> rv_ini=UI::build&lt;RV&gt;(<span class="keyword">set</span>,<span class="stringliteral">&quot;init_rv&quot;</span>,UI::optional);
-<a name="l00201"></a>00201                         <span class="keywordflow">if</span>(rv_ini){ <span class="comment">// check if </span>
-<a name="l00202"></a>00202                                 vec val;
-<a name="l00203"></a>00203                                 <a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a>(val, <span class="keyword">set</span>, <span class="stringliteral">&quot;init_values&quot;</span>, UI::optional);
-<a name="l00204"></a>00204                                 <span class="keywordflow">if</span> (val.length()!=rv_ini-&gt;_dsize()){
-<a name="l00205"></a>00205                                         <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a>(<span class="stringliteral">&quot;init_rv and init_values fields have incompatible sizes&quot;</span>);
-<a name="l00206"></a>00206                                 } <span class="keywordflow">else</span> {
-<a name="l00207"></a>00207                                         <a class="code" href="classbdm_1_1MpdfDS.html#a54e70167144e692877e7b49633219d5a" title="datalink between ut and regressor">ut2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#ac95435dc0781d14529cddde9b2894b6d" title="set history of variable given by rv1 to values of hist.">set_history</a>(*rv_ini, val);
-<a name="l00208"></a>00208                                         <a class="code" href="classbdm_1_1MpdfDS.html#a6ccbcf01b1cd5bd3500aefc3091d9a2b" title="datalink between yt and regressor">yt2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#ac95435dc0781d14529cddde9b2894b6d" title="set history of variable given by rv1 to values of hist.">set_history</a>(*rv_ini, val);
-<a name="l00209"></a>00209                                 }
-<a name="l00210"></a>00210                         }
-<a name="l00211"></a>00211 
-<a name="l00212"></a>00212                         <a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a> = zeros ( <a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;dimension() );
-<a name="l00213"></a>00213                         <a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a> = zeros ( <a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;dimensionc() );
-<a name="l00214"></a>00214                         <a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417" title="input vector">ut</a> = zeros(<a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>());
-<a name="l00215"></a>00215 
-<a name="l00216"></a>00216                         <a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd" title="size of output">ytsize</a>=<a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>.length();
-<a name="l00217"></a>00217                         <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>=ut.length();
-<a name="l00218"></a>00218                         <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> = ytsize+<a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>;
-<a name="l00219"></a>00219                         <a class="code" href="classbdm_1_1MpdfDS.html#a225b78b246515bb36208309003ad4867" title="This method TODO.">validate</a>();
-<a name="l00220"></a>00220                 }
-<a name="l00221"></a><a class="code" href="classbdm_1_1MpdfDS.html#a225b78b246515bb36208309003ad4867">00221</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MpdfDS.html#a225b78b246515bb36208309003ad4867" title="This method TODO.">validate</a>() {
-<a name="l00222"></a>00222                         <span class="comment">//taken from sample() - shift of history is not done here</span>
-<a name="l00223"></a>00223                         <a class="code" href="classbdm_1_1MpdfDS.html#a54e70167144e692877e7b49633219d5a" title="datalink between ut and regressor">ut2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417" title="input vector">ut</a>,<a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a> );
-<a name="l00224"></a>00224                         <a class="code" href="classbdm_1_1MpdfDS.html#a6ccbcf01b1cd5bd3500aefc3091d9a2b" title="datalink between yt and regressor">yt2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>,<a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a> );
-<a name="l00225"></a>00225                         <a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>=<a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;samplecond ( <a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a> );
-<a name="l00226"></a>00226                 }
-<a name="l00227"></a>00227 };
-<a name="l00228"></a>00228 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( MpdfDS );
-<a name="l00229"></a>00229 
-<a name="l00233"></a><a class="code" href="classbdm_1_1FileDS.html">00233</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1FileDS.html">FileDS</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1MemDS.html" title="Memory storage of off-line data column-wise.">MemDS</a> {
-<a name="l00234"></a>00234 
-<a name="l00235"></a>00235         <span class="keyword">public</span>:
-<a name="l00236"></a><a class="code" href="classbdm_1_1FileDS.html#a0bf36650e9d1af2d0743ffe8a3fcff14">00236</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1FileDS.html#a0bf36650e9d1af2d0743ffe8a3fcff14" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt ) {
-<a name="l00237"></a>00237                         dt = <a class="code" href="classbdm_1_1MemDS.html#aa724f4cbfc32e79bacc044253234e260" title="internal matrix of data">Data</a>.get_col ( <a class="code" href="classbdm_1_1MemDS.html#a681ee3831f68f4f20ed54e04e8b3f107" title="active column in the Data matrix">time</a> );
-<a name="l00238"></a>00238                 }
-<a name="l00239"></a>00239 
-<a name="l00240"></a><a class="code" href="classbdm_1_1FileDS.html#a3c546e8d9eb71e079e046e3d2f69c6c4">00240</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1FileDS.html#a3c546e8d9eb71e079e046e3d2f69c6c4" title="Returns data records at indeces.">getdata</a> ( vec &amp;dt, <span class="keyword">const</span> ivec &amp;indices ) {
-<a name="l00241"></a>00241                         vec tmp = <a class="code" href="classbdm_1_1MemDS.html#aa724f4cbfc32e79bacc044253234e260" title="internal matrix of data">Data</a>.get_col ( <a class="code" href="classbdm_1_1MemDS.html#a681ee3831f68f4f20ed54e04e8b3f107" title="active column in the Data matrix">time</a> );
-<a name="l00242"></a>00242                         dt = tmp ( indices );
-<a name="l00243"></a>00243                 }
-<a name="l00244"></a>00244 
-<a name="l00246"></a><a class="code" href="classbdm_1_1FileDS.html#aa6af63065097147b390e684a7842a26a">00246</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1FileDS.html#aa6af63065097147b390e684a7842a26a" title="returns number of data in the file;">ndat</a>() {
-<a name="l00247"></a>00247                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1MemDS.html#aa724f4cbfc32e79bacc044253234e260" title="internal matrix of data">Data</a>.cols();
-<a name="l00248"></a>00248                 }
-<a name="l00250"></a><a class="code" href="classbdm_1_1FileDS.html#a998f590eeddee97ae6918671e40756b8">00250</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1FileDS.html#a998f590eeddee97ae6918671e40756b8" title="no sense to log this type">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {};
-<a name="l00252"></a><a class="code" href="classbdm_1_1FileDS.html#a59d44ef34a523127dd79c076461c43b6">00252</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1FileDS.html#a59d44ef34a523127dd79c076461c43b6" title="no sense to log this type">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {};
-<a name="l00253"></a>00253 };
-<a name="l00254"></a>00254 
-<a name="l00261"></a><a class="code" href="classbdm_1_1ITppFileDS.html">00261</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1ITppFileDS.html" title="Read Data Matrix from an IT file.">ITppFileDS</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1FileDS.html">FileDS</a> {
-<a name="l00262"></a>00262 
-<a name="l00263"></a>00263         <span class="keyword">public</span>:
-<a name="l00264"></a>00264                 <a class="code" href="classbdm_1_1ITppFileDS.html" title="Read Data Matrix from an IT file.">ITppFileDS</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;fname, <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;varname ) : <a class="code" href="classbdm_1_1FileDS.html">FileDS</a>() {
-<a name="l00265"></a>00265                         it_file it ( fname );
-<a name="l00266"></a>00266                         it &lt;&lt; Name ( varname );
-<a name="l00267"></a>00267                         it &gt;&gt; <a class="code" href="classbdm_1_1MemDS.html#aa724f4cbfc32e79bacc044253234e260" title="internal matrix of data">Data</a>;
-<a name="l00268"></a>00268                         <a class="code" href="classbdm_1_1MemDS.html#a681ee3831f68f4f20ed54e04e8b3f107" title="active column in the Data matrix">time</a> = 0;
-<a name="l00269"></a>00269                         <span class="comment">//rowid and delays are ignored</span>
-<a name="l00270"></a>00270                 };
-<a name="l00271"></a>00271 
-<a name="l00272"></a>00272                 <a class="code" href="classbdm_1_1ITppFileDS.html" title="Read Data Matrix from an IT file.">ITppFileDS</a> () : <a class="code" href="classbdm_1_1FileDS.html">FileDS</a>() {
-<a name="l00273"></a>00273                 };
-<a name="l00274"></a>00274 
-<a name="l00275"></a>00275                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1ITppFileDS.html#afd192da176625a909fa853458b604566">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> );
+<a name="l00056"></a>00056                 <a class="code" href="classbdm_1_1MemDS.html#a1ea231f4066652996cde4826560d93e3" title="Default constructor.">MemDS</a> ( mat &amp;Dat, ivec &amp;rowid0);
+<a name="l00081"></a><a class="code" href="classbdm_1_1MemDS.html#afaebfe6d7a2a43421be05d8cf7d7ae45">00081</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MemDS.html#afaebfe6d7a2a43421be05d8cf7d7ae45">from_setting</a>(<span class="keyword">const</span> Setting &amp;<span class="keyword">set</span>){
+<a name="l00082"></a>00082                         <a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a>(<a class="code" href="classbdm_1_1MemDS.html#aa724f4cbfc32e79bacc044253234e260" title="internal matrix of data">Data</a>, <span class="keyword">set</span>, <span class="stringliteral">&quot;Data&quot;</span>, UI::compulsory);
+<a name="l00083"></a>00083                         <span class="keywordflow">if</span>(!<a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a>(<a class="code" href="classbdm_1_1MemDS.html#a681ee3831f68f4f20ed54e04e8b3f107" title="active column in the Data matrix">time</a>, <span class="keyword">set</span>,<span class="stringliteral">&quot;time&quot;</span>, UI::optional)) {<a class="code" href="classbdm_1_1MemDS.html#a681ee3831f68f4f20ed54e04e8b3f107" title="active column in the Data matrix">time</a> =0;}
+<a name="l00084"></a>00084                         <span class="keywordflow">if</span>(!<a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a>(<a class="code" href="classbdm_1_1MemDS.html#a865814d49913dcf672bb20a4334d3dc4" title="vector of rows that are presented in Dt">rowid</a>, <span class="keyword">set</span>, <span class="stringliteral">&quot;rowid&quot;</span>,UI::optional)) {<a class="code" href="classbdm_1_1MemDS.html#a865814d49913dcf672bb20a4334d3dc4" title="vector of rows that are presented in Dt">rowid</a> =linspace(0,<a class="code" href="classbdm_1_1MemDS.html#aa724f4cbfc32e79bacc044253234e260" title="internal matrix of data">Data</a>.rows()-1);}
+<a name="l00085"></a>00085                         <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr&lt;RV&gt;</a> r=UI::build&lt;RV&gt;(<span class="keyword">set</span>,<span class="stringliteral">&quot;drv&quot;</span>,UI::optional);
+<a name="l00086"></a>00086                         <span class="keywordflow">if</span> (!r) {r=<span class="keyword">new</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>();
+<a name="l00087"></a>00087                                 <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i=0; i&lt;<a class="code" href="classbdm_1_1MemDS.html#a865814d49913dcf672bb20a4334d3dc4" title="vector of rows that are presented in Dt">rowid</a>.length(); i++){ r-&gt;add(<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>(<span class="stringliteral">&quot;ch&quot;</span>+num2str(<a class="code" href="classbdm_1_1MemDS.html#a865814d49913dcf672bb20a4334d3dc4" title="vector of rows that are presented in Dt">rowid</a>(i)), 1, 0));}
+<a name="l00088"></a>00088                         }
+<a name="l00089"></a>00089                         <a class="code" href="classbdm_1_1MemDS.html#ae0796d428a29a0393173b453a6bb44b7" title="set random variables">set_drv</a>(*r,<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>()); <span class="comment">//empty urv</span>
+<a name="l00090"></a>00090                         <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a>=r-&gt;_dsize();
+<a name="l00091"></a>00091                         <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>=0;
+<a name="l00092"></a>00092                 }
+<a name="l00093"></a>00093 };
+<a name="l00094"></a>00094 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a>(MemDS);
+<a name="l00095"></a>00095 
+<a name="l00101"></a><a class="code" href="classbdm_1_1EpdfDS.html">00101</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1EpdfDS.html" title="Simulate data from a static pdf (epdf).">EpdfDS</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> {
+<a name="l00102"></a>00102         <span class="keyword">protected</span>:
+<a name="l00104"></a><a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5">00104</a>                 <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;epdf&gt;</a> <a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>;
+<a name="l00106"></a><a class="code" href="classbdm_1_1EpdfDS.html#a67637d64bcabf6ecb4a80284dc60dc3f">00106</a>                 vec <a class="code" href="classbdm_1_1EpdfDS.html#a67637d64bcabf6ecb4a80284dc60dc3f" title="internal storage of data sample">dt</a>;
+<a name="l00107"></a>00107         <span class="keyword">public</span>:
+<a name="l00108"></a><a class="code" href="classbdm_1_1EpdfDS.html#aa1bd25d052dd50da9854d78e2f2096d0">00108</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1EpdfDS.html#aa1bd25d052dd50da9854d78e2f2096d0" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>() {
+<a name="l00109"></a>00109                         <a class="code" href="classbdm_1_1EpdfDS.html#a67637d64bcabf6ecb4a80284dc60dc3f" title="internal storage of data sample">dt</a>=<a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>-&gt;sample();
+<a name="l00110"></a>00110                 }
+<a name="l00111"></a><a class="code" href="classbdm_1_1EpdfDS.html#a62c4a9d343dd773c4e75b5f2338b9ba7">00111</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1EpdfDS.html#a62c4a9d343dd773c4e75b5f2338b9ba7" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt_out ) {
+<a name="l00112"></a>00112                         dt_out = <a class="code" href="classbdm_1_1EpdfDS.html#a67637d64bcabf6ecb4a80284dc60dc3f" title="internal storage of data sample">dt</a>;
+<a name="l00113"></a>00113                 }
+<a name="l00114"></a><a class="code" href="classbdm_1_1EpdfDS.html#a5b3d9370351ca393d4df6f6da6ac5f99">00114</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1EpdfDS.html#a5b3d9370351ca393d4df6f6da6ac5f99" title="Returns data records at indeces.">getdata</a> ( vec &amp;dt_out, <span class="keyword">const</span> ivec &amp;ids ) {
+<a name="l00115"></a>00115                         dt_out = <a class="code" href="classbdm_1_1EpdfDS.html#a67637d64bcabf6ecb4a80284dc60dc3f" title="internal storage of data sample">dt</a> ( ids );
+<a name="l00116"></a>00116                 }
+<a name="l00117"></a><a class="code" href="classbdm_1_1EpdfDS.html#a02e3e210884bbdc8134a2a23cc41dd34">00117</a>                 <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>&amp; <a class="code" href="classbdm_1_1EpdfDS.html#a02e3e210884bbdc8134a2a23cc41dd34" title="access function">_drv</a>()<span class="keyword"> const </span>{
+<a name="l00118"></a>00118                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>-&gt;_rv();
+<a name="l00119"></a>00119                 }
+<a name="l00120"></a>00120 
+<a name="l00128"></a><a class="code" href="classbdm_1_1EpdfDS.html#a3fdfb570b5d12332b2ba5662d17badac">00128</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1EpdfDS.html#a3fdfb570b5d12332b2ba5662d17badac">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ) {
+<a name="l00129"></a>00129                         <a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>=UI::build&lt;epdf&gt; ( <span class="keyword">set</span>,<span class="stringliteral">&quot;epdf&quot;</span>,UI::compulsory );
+<a name="l00130"></a>00130                         <a class="code" href="bdmerror_8h.html#a7a3399d182b8e3065532596e76f84849" title="Throw std::runtime_exception if t is not true.">bdm_assert</a>(<a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>-&gt;isnamed(), <span class="stringliteral">&quot;Input epdf must be named, check if RV is given correctly&quot;</span>);
+<a name="l00131"></a>00131                         <a class="code" href="classbdm_1_1EpdfDS.html#a67637d64bcabf6ecb4a80284dc60dc3f" title="internal storage of data sample">dt</a> =  zeros(<a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>-&gt;dimension());
+<a name="l00132"></a>00132                         <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a>=dt.length();
+<a name="l00133"></a>00133                         <a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc" title="set random variables">set_drv</a>(<a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>-&gt;_rv(),<a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a>());
+<a name="l00134"></a>00134                         <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> =0;
+<a name="l00135"></a>00135                         <a class="code" href="classbdm_1_1EpdfDS.html#a0a35af977871319479542183fde6a647" title="This method TODO.">validate</a>();
+<a name="l00136"></a>00136                 }
+<a name="l00137"></a><a class="code" href="classbdm_1_1EpdfDS.html#a0a35af977871319479542183fde6a647">00137</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1EpdfDS.html#a0a35af977871319479542183fde6a647" title="This method TODO.">validate</a>() {
+<a name="l00138"></a>00138                         <a class="code" href="classbdm_1_1EpdfDS.html#a67637d64bcabf6ecb4a80284dc60dc3f" title="internal storage of data sample">dt</a> = <a class="code" href="classbdm_1_1EpdfDS.html#a83784c6ca9d311a38ff768cb0718c5b5" title="internal pointer to epdf from which we samplecond">iepdf</a>-&gt;sample();
+<a name="l00139"></a>00139                 }
+<a name="l00140"></a>00140 };
+<a name="l00141"></a>00141 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( EpdfDS );
+<a name="l00142"></a>00142 
+<a name="l00146"></a><a class="code" href="classbdm_1_1MpdfDS.html">00146</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1MpdfDS.html" title="Simulate data from conditional density Still having only one density but allowing...">MpdfDS</a> :<span class="keyword">public</span> <a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> {
+<a name="l00147"></a>00147         <span class="keyword">protected</span>:
+<a name="l00149"></a><a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac">00149</a>                 <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;mpdf&gt;</a> <a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>;
+<a name="l00151"></a><a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082">00151</a>                 vec <a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>;
+<a name="l00153"></a><a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417">00153</a>                 vec <a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417" title="input vector">ut</a>;
+<a name="l00155"></a><a class="code" href="classbdm_1_1MpdfDS.html#a54e70167144e692877e7b49633219d5a">00155</a>                 <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> <a class="code" href="classbdm_1_1MpdfDS.html#a54e70167144e692877e7b49633219d5a" title="datalink between ut and regressor">ut2rgr</a>;
+<a name="l00157"></a><a class="code" href="classbdm_1_1MpdfDS.html#a6ccbcf01b1cd5bd3500aefc3091d9a2b">00157</a>                 <a class="code" href="classbdm_1_1datalink__buffered.html" title="Datalink that buffers delayed values - do not forget to call step().">datalink_buffered</a> <a class="code" href="classbdm_1_1MpdfDS.html#a6ccbcf01b1cd5bd3500aefc3091d9a2b" title="datalink between yt and regressor">yt2rgr</a>;
+<a name="l00159"></a><a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e">00159</a>                 vec <a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a>;
+<a name="l00160"></a>00160                 
+<a name="l00161"></a>00161         <span class="keyword">public</span>:
+<a name="l00162"></a><a class="code" href="classbdm_1_1MpdfDS.html#a9dfd98688d14f647c613bf63a95a19b6">00162</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MpdfDS.html#a9dfd98688d14f647c613bf63a95a19b6" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>() {
+<a name="l00163"></a>00163                         <a class="code" href="classbdm_1_1MpdfDS.html#a6ccbcf01b1cd5bd3500aefc3091d9a2b" title="datalink between yt and regressor">yt2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f" title="push current data to history">step</a>(<a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>); <span class="comment">// y is now history</span>
+<a name="l00164"></a>00164                         <a class="code" href="classbdm_1_1MpdfDS.html#a54e70167144e692877e7b49633219d5a" title="datalink between ut and regressor">ut2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417" title="input vector">ut</a>,<a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a> );
+<a name="l00165"></a>00165                         <a class="code" href="classbdm_1_1MpdfDS.html#a6ccbcf01b1cd5bd3500aefc3091d9a2b" title="datalink between yt and regressor">yt2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>,<a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a> );
+<a name="l00166"></a>00166                         <a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>=<a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;samplecond ( <a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a> );
+<a name="l00167"></a>00167                         <a class="code" href="classbdm_1_1MpdfDS.html#a54e70167144e692877e7b49633219d5a" title="datalink between ut and regressor">ut2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#af137706c55891ba8a8aecc52ea96865f" title="push current data to history">step</a>(<a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417" title="input vector">ut</a>); <span class="comment">//u is now history</span>
+<a name="l00168"></a>00168                 }
+<a name="l00169"></a><a class="code" href="classbdm_1_1MpdfDS.html#a8752dbb56c269353cd5135349b4f8408">00169</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MpdfDS.html#a8752dbb56c269353cd5135349b4f8408" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt_out ) {
+<a name="l00170"></a>00170                         <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a>(dt_out.length()&gt;=<a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>+<a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd" title="size of output">ytsize</a>,<span class="stringliteral">&quot;Short output vector&quot;</span>);
+<a name="l00171"></a>00171                         dt_out.set_subvector(0, <a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>);
+<a name="l00172"></a>00172                         dt_out.set_subvector(ytsize, <a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417" title="input vector">ut</a>);
+<a name="l00173"></a>00173                 }
+<a name="l00174"></a><a class="code" href="classbdm_1_1MpdfDS.html#a537d57d48779983e29e55f4482f344ce">00174</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MpdfDS.html#a537d57d48779983e29e55f4482f344ce" title="Accepts action variable and schedule it for application.">write</a>(<span class="keyword">const</span> vec &amp;ut0){<a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417" title="input vector">ut</a>=ut0;}
+<a name="l00175"></a>00175 
+<a name="l00187"></a><a class="code" href="classbdm_1_1MpdfDS.html#a39ef55fb36da354c93c544129e03f558">00187</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MpdfDS.html#a39ef55fb36da354c93c544129e03f558">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> ) {
+<a name="l00188"></a>00188                         <a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>=UI::build&lt;mpdf&gt; ( <span class="keyword">set</span>,<span class="stringliteral">&quot;mpdf&quot;</span>,UI::compulsory );
+<a name="l00189"></a>00189                         
+<a name="l00190"></a>00190                         <a class="code" href="classbdm_1_1DS.html#aeb9de2a85f0d8257d79d9b68c05c4995" title="Description of output data.">Yrv</a> = <a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;_rv();
+<a name="l00191"></a>00191                         <span class="comment">// get unique rvs form rvc</span>
+<a name="l00192"></a>00192                         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> rgrv0=<a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;_rvc().remove_time();
+<a name="l00193"></a>00193                         <span class="comment">// input is what in not in Yrv</span>
+<a name="l00194"></a>00194                         <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>=rgrv0.<a class="code" href="classbdm_1_1RV.html#aaec44dabdf0a6d90fbae95e1356eda39" title="Subtract another variable from the current one.">subt</a>(Yrv); 
+<a name="l00195"></a>00195                         <a class="code" href="classbdm_1_1DS.html#a3a92d77fd97fdb6bf1c8edb1e38c6bbc" title="set random variables">set_drv</a>(Yrv, <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>);
+<a name="l00196"></a>00196                         <span class="comment">// connect input and output to rvc</span>
+<a name="l00197"></a>00197                         <a class="code" href="classbdm_1_1MpdfDS.html#a54e70167144e692877e7b49633219d5a" title="datalink between ut and regressor">ut2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a>(<a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;_rvc(), <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>); 
+<a name="l00198"></a>00198                         <a class="code" href="classbdm_1_1MpdfDS.html#a6ccbcf01b1cd5bd3500aefc3091d9a2b" title="datalink between yt and regressor">yt2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#aadefa427312905425ebab8531da1846a" title="set connection, rv must be fully present in rv_up">set_connection</a>(<a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;_rvc(), Yrv); 
+<a name="l00199"></a>00199                         
+<a name="l00200"></a>00200                         <span class="comment">//set history - if given</span>
+<a name="l00201"></a>00201                         <a class="code" href="classbdm_1_1shared__ptr.html" title="A naive implementation of roughly a subset of the std::tr1::shared_ptr spec.">shared_ptr&lt;RV&gt;</a> rv_ini=UI::build&lt;RV&gt;(<span class="keyword">set</span>,<span class="stringliteral">&quot;init_rv&quot;</span>,UI::optional);
+<a name="l00202"></a>00202                         <span class="keywordflow">if</span>(rv_ini){ <span class="comment">// check if </span>
+<a name="l00203"></a>00203                                 vec val;
+<a name="l00204"></a>00204                                 <a class="code" href="classbdm_1_1UI.html#acd1667e6fec99ec64dabcb3ca2ff922d">UI::get</a>(val, <span class="keyword">set</span>, <span class="stringliteral">&quot;init_values&quot;</span>, UI::optional);
+<a name="l00205"></a>00205                                 <span class="keywordflow">if</span> (val.length()!=rv_ini-&gt;_dsize()){
+<a name="l00206"></a>00206                                         <a class="code" href="bdmerror_8h.html#a7c43f3a72afe68ab0c85663a1bb3521a" title="Unconditionally throw std::runtime_error.">bdm_error</a>(<span class="stringliteral">&quot;init_rv and init_values fields have incompatible sizes&quot;</span>);
+<a name="l00207"></a>00207                                 } <span class="keywordflow">else</span> {
+<a name="l00208"></a>00208                                         <a class="code" href="classbdm_1_1MpdfDS.html#a54e70167144e692877e7b49633219d5a" title="datalink between ut and regressor">ut2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#ac95435dc0781d14529cddde9b2894b6d" title="set history of variable given by rv1 to values of hist.">set_history</a>(*rv_ini, val);
+<a name="l00209"></a>00209                                         <a class="code" href="classbdm_1_1MpdfDS.html#a6ccbcf01b1cd5bd3500aefc3091d9a2b" title="datalink between yt and regressor">yt2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#ac95435dc0781d14529cddde9b2894b6d" title="set history of variable given by rv1 to values of hist.">set_history</a>(*rv_ini, val);
+<a name="l00210"></a>00210                                 }
+<a name="l00211"></a>00211                         }
+<a name="l00212"></a>00212 
+<a name="l00213"></a>00213                         <a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a> = zeros ( <a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;dimension() );
+<a name="l00214"></a>00214                         <a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a> = zeros ( <a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;dimensionc() );
+<a name="l00215"></a>00215                         <a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417" title="input vector">ut</a> = zeros(<a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>());
+<a name="l00216"></a>00216 
+<a name="l00217"></a>00217                         <a class="code" href="classbdm_1_1DS.html#a22a4b29aa6e9f3bf17bcc4b28567e8bd" title="size of output">ytsize</a>=<a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>.length();
+<a name="l00218"></a>00218                         <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>=ut.length();
+<a name="l00219"></a>00219                         <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> = ytsize+<a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a>;
+<a name="l00220"></a>00220                         <a class="code" href="classbdm_1_1MpdfDS.html#a225b78b246515bb36208309003ad4867" title="This method TODO.">validate</a>();
+<a name="l00221"></a>00221                 }
+<a name="l00222"></a><a class="code" href="classbdm_1_1MpdfDS.html#a225b78b246515bb36208309003ad4867">00222</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1MpdfDS.html#a225b78b246515bb36208309003ad4867" title="This method TODO.">validate</a>() {
+<a name="l00223"></a>00223                         <span class="comment">//taken from sample() - shift of history is not done here</span>
+<a name="l00224"></a>00224                         <a class="code" href="classbdm_1_1MpdfDS.html#a54e70167144e692877e7b49633219d5a" title="datalink between ut and regressor">ut2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <a class="code" href="classbdm_1_1MpdfDS.html#a27751c04183acab85bdaf3598f47a417" title="input vector">ut</a>,<a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a> );
+<a name="l00225"></a>00225                         <a class="code" href="classbdm_1_1MpdfDS.html#a6ccbcf01b1cd5bd3500aefc3091d9a2b" title="datalink between yt and regressor">yt2rgr</a>.<a class="code" href="classbdm_1_1datalink__buffered.html#a681745a319728a416486df38aacd579f" title="Get val for vector val_down from val of &amp;quot;Up&amp;quot;.">filldown</a> ( <a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>,<a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a> );
+<a name="l00226"></a>00226                         <a class="code" href="classbdm_1_1MpdfDS.html#a959cfe345bf0f165ff80f687826e1082" title="internal storage of data sample">yt</a>=<a class="code" href="classbdm_1_1MpdfDS.html#a7b91950fa4c2c323df69a6bc9a6a04ac" title="internal pointer to epdf from which we samplecond">impdf</a>-&gt;samplecond ( <a class="code" href="classbdm_1_1MpdfDS.html#a1fffeda455aa454c4509ff69fa9ccb3e" title="numeric values of regressor">rgr</a> );
+<a name="l00227"></a>00227                 }
+<a name="l00228"></a>00228 };
+<a name="l00229"></a>00229 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( MpdfDS );
+<a name="l00230"></a>00230 
+<a name="l00234"></a><a class="code" href="classbdm_1_1FileDS.html">00234</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1FileDS.html">FileDS</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1MemDS.html" title="Memory storage of off-line data column-wise.">MemDS</a> {
+<a name="l00235"></a>00235 
+<a name="l00236"></a>00236         <span class="keyword">public</span>:
+<a name="l00237"></a><a class="code" href="classbdm_1_1FileDS.html#a0bf36650e9d1af2d0743ffe8a3fcff14">00237</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1FileDS.html#a0bf36650e9d1af2d0743ffe8a3fcff14" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt ) {
+<a name="l00238"></a>00238                         dt = <a class="code" href="classbdm_1_1MemDS.html#aa724f4cbfc32e79bacc044253234e260" title="internal matrix of data">Data</a>.get_col ( <a class="code" href="classbdm_1_1MemDS.html#a681ee3831f68f4f20ed54e04e8b3f107" title="active column in the Data matrix">time</a> );
+<a name="l00239"></a>00239                 }
+<a name="l00240"></a>00240 
+<a name="l00241"></a><a class="code" href="classbdm_1_1FileDS.html#a3c546e8d9eb71e079e046e3d2f69c6c4">00241</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1FileDS.html#a3c546e8d9eb71e079e046e3d2f69c6c4" title="Returns data records at indeces.">getdata</a> ( vec &amp;dt, <span class="keyword">const</span> ivec &amp;indices ) {
+<a name="l00242"></a>00242                         vec tmp = <a class="code" href="classbdm_1_1MemDS.html#aa724f4cbfc32e79bacc044253234e260" title="internal matrix of data">Data</a>.get_col ( <a class="code" href="classbdm_1_1MemDS.html#a681ee3831f68f4f20ed54e04e8b3f107" title="active column in the Data matrix">time</a> );
+<a name="l00243"></a>00243                         dt = tmp ( indices );
+<a name="l00244"></a>00244                 }
+<a name="l00245"></a>00245 
+<a name="l00247"></a><a class="code" href="classbdm_1_1FileDS.html#aa6af63065097147b390e684a7842a26a">00247</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1FileDS.html#aa6af63065097147b390e684a7842a26a" title="returns number of data in the file;">ndat</a>() {
+<a name="l00248"></a>00248                         <span class="keywordflow">return</span> <a class="code" href="classbdm_1_1MemDS.html#aa724f4cbfc32e79bacc044253234e260" title="internal matrix of data">Data</a>.cols();
+<a name="l00249"></a>00249                 }
+<a name="l00251"></a><a class="code" href="classbdm_1_1FileDS.html#a998f590eeddee97ae6918671e40756b8">00251</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1FileDS.html#a998f590eeddee97ae6918671e40756b8" title="no sense to log this type">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {};
+<a name="l00253"></a><a class="code" href="classbdm_1_1FileDS.html#a59d44ef34a523127dd79c076461c43b6">00253</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1FileDS.html#a59d44ef34a523127dd79c076461c43b6" title="no sense to log this type">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {};
+<a name="l00254"></a>00254 };
+<a name="l00255"></a>00255 
+<a name="l00262"></a><a class="code" href="classbdm_1_1ITppFileDS.html">00262</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1ITppFileDS.html" title="Read Data Matrix from an IT file.">ITppFileDS</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1FileDS.html">FileDS</a> {
+<a name="l00263"></a>00263 
+<a name="l00264"></a>00264         <span class="keyword">public</span>:
+<a name="l00266"></a><a class="code" href="classbdm_1_1ITppFileDS.html#a9a1ea166e35aaaa1660905ed7249608c">00266</a>                 <a class="code" href="classbdm_1_1ITppFileDS.html#a9a1ea166e35aaaa1660905ed7249608c" title="Convenience constructor.">ITppFileDS</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;fname, <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;varname ) : <a class="code" href="classbdm_1_1FileDS.html">FileDS</a>() {
+<a name="l00267"></a>00267                         it_file it ( fname );
+<a name="l00268"></a>00268                         it &lt;&lt; Name ( varname );
+<a name="l00269"></a>00269                         it &gt;&gt; <a class="code" href="classbdm_1_1MemDS.html#aa724f4cbfc32e79bacc044253234e260" title="internal matrix of data">Data</a>;
+<a name="l00270"></a>00270                         <a class="code" href="classbdm_1_1MemDS.html#a681ee3831f68f4f20ed54e04e8b3f107" title="active column in the Data matrix">time</a> = 0;
+<a name="l00271"></a>00271                         <span class="comment">//rowid and delays are ignored</span>
+<a name="l00272"></a>00272                 };
+<a name="l00273"></a>00273 
+<a name="l00274"></a>00274                 <a class="code" href="classbdm_1_1ITppFileDS.html" title="Read Data Matrix from an IT file.">ITppFileDS</a> () : <a class="code" href="classbdm_1_1FileDS.html">FileDS</a>() {
+<a name="l00275"></a>00275                 };
 <a name="l00276"></a>00276 
-<a name="l00277"></a>00277                 <span class="comment">// TODO dodelat void to_setting( Setting &amp;set ) const;</span>
+<a name="l00277"></a>00277                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1ITppFileDS.html#afd192da176625a909fa853458b604566">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> );
 <a name="l00278"></a>00278 
-<a name="l00279"></a>00279 };
+<a name="l00279"></a>00279                 <span class="comment">// TODO dodelat void to_setting( Setting &amp;set ) const;</span>
 <a name="l00280"></a>00280 
-<a name="l00281"></a>00281 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( <a class="code" href="classbdm_1_1ITppFileDS.html" title="Read Data Matrix from an IT file.">ITppFileDS</a> );
-<a name="l00282"></a>00282 SHAREDPTR ( <a class="code" href="classbdm_1_1ITppFileDS.html" title="Read Data Matrix from an IT file.">ITppFileDS</a> );
-<a name="l00283"></a>00283 
-<a name="l00291"></a><a class="code" href="classbdm_1_1CsvFileDS.html">00291</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1CsvFileDS.html" title="CSV file data storage The constructor creates Data matrix from the records in a CSV...">CsvFileDS</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1FileDS.html">FileDS</a> {
-<a name="l00292"></a>00292 
-<a name="l00293"></a>00293         <span class="keyword">public</span>:
-<a name="l00295"></a>00295                 <a class="code" href="classbdm_1_1CsvFileDS.html#a8d9d56cdf6b8d0236e32a80e11c238b0" title="Constructor - create DS from a CSV file.">CsvFileDS</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span>&amp; fname, <span class="keyword">const</span> <span class="keywordtype">string</span>&amp; orientation = <span class="stringliteral">&quot;BY_COL&quot;</span> );
-<a name="l00296"></a>00296 };
-<a name="l00297"></a>00297 
-<a name="l00298"></a>00298 
+<a name="l00281"></a>00281 };
+<a name="l00282"></a>00282 
+<a name="l00283"></a>00283 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( ITppFileDS );
+<a name="l00284"></a>00284 SHAREDPTR ( ITppFileDS );
+<a name="l00285"></a>00285 
+<a name="l00293"></a><a class="code" href="classbdm_1_1CsvFileDS.html">00293</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1CsvFileDS.html" title="CSV file data storage The constructor creates Data matrix from the records in a CSV...">CsvFileDS</a>: <span class="keyword">public</span> <a class="code" href="classbdm_1_1FileDS.html">FileDS</a> {
+<a name="l00294"></a>00294 
+<a name="l00295"></a>00295         <span class="keyword">public</span>:
+<a name="l00297"></a>00297                 <a class="code" href="classbdm_1_1CsvFileDS.html#a8d9d56cdf6b8d0236e32a80e11c238b0" title="Constructor - create DS from a CSV file.">CsvFileDS</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span>&amp; fname, <span class="keyword">const</span> <span class="keywordtype">string</span>&amp; orientation = <span class="stringliteral">&quot;BY_COL&quot;</span> );
+<a name="l00298"></a>00298 };
 <a name="l00299"></a>00299 
-<a name="l00304"></a><a class="code" href="classbdm_1_1ArxDS.html">00304</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1ArxDS.html" title="Generator of ARX data.">ArxDS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> {
-<a name="l00305"></a>00305         <span class="keyword">protected</span>:
-<a name="l00307"></a><a class="code" href="classbdm_1_1ArxDS.html#ac7b3cc6cd059ff3d7f4462cedff4bdeb">00307</a>                 <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> <a class="code" href="classbdm_1_1ArxDS.html#ac7b3cc6cd059ff3d7f4462cedff4bdeb" title="Rv of the regressor.">Rrv</a>;
-<a name="l00309"></a><a class="code" href="classbdm_1_1ArxDS.html#aa11a3f3fbeea1d17b66b073017964597">00309</a>                 vec <a class="code" href="classbdm_1_1ArxDS.html#aa11a3f3fbeea1d17b66b073017964597" title="History, ordered as .">H</a>;
-<a name="l00311"></a><a class="code" href="classbdm_1_1ArxDS.html#a392b87be85675cb3d55fa4953d671bb5">00311</a>                 vec <a class="code" href="classbdm_1_1ArxDS.html#a392b87be85675cb3d55fa4953d671bb5" title="(future) input">U</a>;
-<a name="l00313"></a><a class="code" href="classbdm_1_1ArxDS.html#ab2d7530264499b92c3aa32454b960abe">00313</a>                 vec <a class="code" href="classbdm_1_1ArxDS.html#ab2d7530264499b92c3aa32454b960abe" title="temporary variable for regressor">rgr</a>;
-<a name="l00315"></a><a class="code" href="classbdm_1_1ArxDS.html#afbe7b993ec5f75c195ae1b2ccd96a898">00315</a>                 <a class="code" href="classbdm_1_1datalink.html" title="DataLink is a connection between two data vectors Up and Down.">datalink</a> <a class="code" href="classbdm_1_1ArxDS.html#afbe7b993ec5f75c195ae1b2ccd96a898" title="data link: H -&amp;gt; rgr">rgrlnk</a>;
-<a name="l00317"></a><a class="code" href="classbdm_1_1ArxDS.html#a0aa9d8d35792159dc9611802f6c190eb">00317</a>                 <a class="code" href="classbdm_1_1mlnorm.html">mlnorm&lt;chmat&gt;</a> <a class="code" href="classbdm_1_1ArxDS.html#a0aa9d8d35792159dc9611802f6c190eb" title="model of Y - linear Gaussian">model</a>;
-<a name="l00319"></a><a class="code" href="classbdm_1_1ArxDS.html#a064e5d3f2dc0b39459c7ca53d05223e1">00319</a>                 <span class="keywordtype">bool</span> <a class="code" href="classbdm_1_1ArxDS.html#a064e5d3f2dc0b39459c7ca53d05223e1" title="options">opt_L_theta</a>;
-<a name="l00321"></a><a class="code" href="classbdm_1_1ArxDS.html#ae13e5ffdfe9d896089310b0fc54e0c85">00321</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1ArxDS.html#ae13e5ffdfe9d896089310b0fc54e0c85" title="loggers">L_theta</a>;
-<a name="l00322"></a>00322                 <span class="keywordtype">int</span> L_R;
-<a name="l00323"></a>00323                 <span class="keywordtype">int</span> dt_size;
-<a name="l00324"></a>00324         <span class="keyword">public</span>:
-<a name="l00325"></a><a class="code" href="classbdm_1_1ArxDS.html#adb242e35812c311c8415bb7e31c3f595">00325</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1ArxDS.html#adb242e35812c311c8415bb7e31c3f595" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt ) {
-<a name="l00326"></a>00326                         dt = <a class="code" href="classbdm_1_1ArxDS.html#aa11a3f3fbeea1d17b66b073017964597" title="History, ordered as .">H</a>;
-<a name="l00327"></a>00327                 }
-<a name="l00328"></a>00328 
-<a name="l00329"></a><a class="code" href="classbdm_1_1ArxDS.html#a701151418bc5fc3861acef8359fb0d80">00329</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1ArxDS.html#a701151418bc5fc3861acef8359fb0d80" title="Returns data records at indeces.">getdata</a> ( vec &amp;dt, <span class="keyword">const</span> ivec &amp;indices ) {
-<a name="l00330"></a>00330                         dt = <a class="code" href="classbdm_1_1ArxDS.html#aa11a3f3fbeea1d17b66b073017964597" title="History, ordered as .">H</a> ( indices );
-<a name="l00331"></a>00331                 }
-<a name="l00332"></a>00332 
-<a name="l00333"></a><a class="code" href="classbdm_1_1ArxDS.html#a8f6da8a00abba70bc58c7a4030bd8940">00333</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1ArxDS.html#a8f6da8a00abba70bc58c7a4030bd8940" title="Accepts action variable and schedule it for application.">write</a> ( vec &amp;ut ) {
-<a name="l00334"></a>00334                         <a class="code" href="classbdm_1_1ArxDS.html#a392b87be85675cb3d55fa4953d671bb5" title="(future) input">U</a> = ut;
-<a name="l00335"></a>00335                 }
-<a name="l00336"></a>00336 
-<a name="l00337"></a><a class="code" href="classbdm_1_1ArxDS.html#a477fd706639535f520e9dbbd19f73318">00337</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1ArxDS.html#a477fd706639535f520e9dbbd19f73318" title="Accepts action variables at specific indeces.">write</a> ( vec &amp;ut, <span class="keyword">const</span> ivec &amp;indices ) {
-<a name="l00338"></a>00338                         <a class="code" href="bdmerror_8h.html#a89a0f906b242b79c5d3d342291b2cab4" title="Throw std::runtime_exception if t is not true and NDEBUG is not defined.">bdm_assert_debug</a> ( ut.length() == indices.length(), <span class="stringliteral">&quot;ArxDS&quot;</span> );
-<a name="l00339"></a>00339                         set_subvector ( <a class="code" href="classbdm_1_1ArxDS.html#a392b87be85675cb3d55fa4953d671bb5" title="(future) input">U</a>, indices, ut );
-<a name="l00340"></a>00340                 }
-<a name="l00341"></a>00341 
-<a name="l00342"></a>00342                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1ArxDS.html#a57dfa26b23cc03d53b123fa7e0474b19" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>();
-<a name="l00343"></a>00343 
-<a name="l00345"></a><a class="code" href="classbdm_1_1ArxDS.html#a7c8b418677a48041adacac8e8e9c9849">00345</a>                 <a class="code" href="classbdm_1_1ArxDS.html#a7c8b418677a48041adacac8e8e9c9849" title="Default constructor.">ArxDS</a> ( ) {};
-<a name="l00347"></a><a class="code" href="classbdm_1_1ArxDS.html#a2d9abc62f1fee862f0e1c60c5c4a3c8a">00347</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1ArxDS.html#a2d9abc62f1fee862f0e1c60c5c4a3c8a" title="Set parameters of the internal model, H is maximum time delay.">set_parameters</a> ( <span class="keyword">const</span> mat &amp;Th0, <span class="keyword">const</span> vec mu0, <span class="keyword">const</span> <a class="code" href="classbdm_1_1chmat.html" title="Symmetric matrix stored in square root decomposition using upper cholesky.">chmat</a> &amp;sqR0 ) {
-<a name="l00348"></a>00348                         <a class="code" href="classbdm_1_1ArxDS.html#a0aa9d8d35792159dc9611802f6c190eb" title="model of Y - linear Gaussian">model</a>.<a class="code" href="classbdm_1_1mlnorm.html#a04f7c6cda7b2f95161dd5fbcf15d1fd5" title="Set A and R.">set_parameters</a> ( Th0, mu0, sqR0 );
-<a name="l00349"></a>00349                 };
-<a name="l00351"></a><a class="code" href="classbdm_1_1ArxDS.html#ad57285965debab8a4bfc340d4477c853">00351</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1ArxDS.html#ad57285965debab8a4bfc340d4477c853" title="Set.">set_drv</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;yrv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;urv, <span class="keyword">const</span> <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> &amp;rrv ) {
-<a name="l00352"></a>00352                         <a class="code" href="classbdm_1_1ArxDS.html#ac7b3cc6cd059ff3d7f4462cedff4bdeb" title="Rv of the regressor.">Rrv</a> = rrv;
-<a name="l00353"></a>00353                         <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a> = urv;
-<a name="l00354"></a>00354                         dt_size = yrv.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() + urv.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>();
-<a name="l00355"></a>00355 
-<a name="l00356"></a>00356                         <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> drv = concat ( yrv, urv );
-<a name="l00357"></a>00357                         <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> = drv;
-<a name="l00358"></a>00358                         <span class="keywordtype">int</span> td = rrv.<a class="code" href="classbdm_1_1RV.html#a9a5c5aeeaf39299d07763377b05a8241" title="Minimum time-offset.">mint</a>();
-<a name="l00359"></a>00359                         <a class="code" href="classbdm_1_1ArxDS.html#aa11a3f3fbeea1d17b66b073017964597" title="History, ordered as .">H</a>.set_size ( drv.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() * ( -td + 1 ) );
-<a name="l00360"></a>00360                         <a class="code" href="classbdm_1_1ArxDS.html#a392b87be85675cb3d55fa4953d671bb5" title="(future) input">U</a>.set_size ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>() );
-<a name="l00361"></a>00361                         <span class="keywordflow">for</span> ( <span class="keywordtype">int</span> i = -1; i &gt;= td; i-- ) {
-<a name="l00362"></a>00362                                 drv.<a class="code" href="classbdm_1_1RV.html#a449c2b692957528976c189d27236e1ba" title="Shift time by delta.">t_plus</a> ( -1 );
-<a name="l00363"></a>00363                                 <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#a87841b5ee43997b79789c0c22047e224" title="Add (concat) another variable to the current one,.">add</a> ( drv ); <span class="comment">//shift u1</span>
-<a name="l00364"></a>00364                         }
-<a name="l00365"></a>00365                         <a class="code" href="classbdm_1_1ArxDS.html#afbe7b993ec5f75c195ae1b2ccd96a898" title="data link: H -&amp;gt; rgr">rgrlnk</a>.<a class="code" href="classbdm_1_1datalink.html#afb8337aac8329eb0ca96bfb3ff73ec67" title="set connection, rv must be fully present in rv_up">set_connection</a> ( rrv, <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> );
-<a name="l00366"></a>00366 
-<a name="l00367"></a>00367                         <a class="code" href="classbdm_1_1DS.html#af96cae44624e79638a91ec4f2c7c81a9" title="size of data returned by getdata() ">dtsize</a> = <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>();
-<a name="l00368"></a>00368                         <a class="code" href="classbdm_1_1DS.html#ad7467046a0bd05bc992cc5e1bdedb983" title="size of data">utsize</a> = <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>.<a class="code" href="classbdm_1_1RV.html#ade30156104f61d86c94f758861418089" title="total size of a random variable">_dsize</a>();
-<a name="l00369"></a>00369                 }
-<a name="l00371"></a><a class="code" href="classbdm_1_1ArxDS.html#ae7438127de87c5a8128edfa12255b436">00371</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1ArxDS.html#ae7438127de87c5a8128edfa12255b436" title="set options from a string">set_options</a> ( <span class="keyword">const</span> <span class="keywordtype">string</span> &amp;s ) {
-<a name="l00372"></a>00372                         <a class="code" href="classbdm_1_1ArxDS.html#a064e5d3f2dc0b39459c7ca53d05223e1" title="options">opt_L_theta</a> = ( s.find ( <span class="stringliteral">&quot;L_theta&quot;</span> ) != string::npos );
-<a name="l00373"></a>00373                 };
-<a name="l00374"></a><a class="code" href="classbdm_1_1ArxDS.html#a64819633a1191fcaa60d0de26ade2e52">00374</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1ArxDS.html#a64819633a1191fcaa60d0de26ade2e52" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
-<a name="l00375"></a>00375                         <span class="comment">//DS::log_add ( L ); too long!!</span>
-<a name="l00376"></a>00376                         <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a> = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1DS.html#ad8db125ac35f3b8eeb773fc9a4cb45ec" title="Description of data returned by getdata().">Drv</a> ( 0, dt_size ), <span class="stringliteral">&quot;&quot;</span> );
-<a name="l00377"></a>00377                         L_ut = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1DS.html#a9ac5970128fd39f4f6226723cd1de702" title="Description of data witten by by write().">Urv</a>, <span class="stringliteral">&quot;&quot;</span> );
-<a name="l00378"></a>00378 
-<a name="l00379"></a>00379                         <span class="keyword">const</span> mat &amp;A = <a class="code" href="classbdm_1_1ArxDS.html#a0aa9d8d35792159dc9611802f6c190eb" title="model of Y - linear Gaussian">model</a>.<a class="code" href="classbdm_1_1mlnorm.html#a55e1bd7fa70b852bd7fe50ce72fb8f23" title="access function">_A</a>();
-<a name="l00380"></a>00380                         <span class="keyword">const</span> mat R = <a class="code" href="classbdm_1_1ArxDS.html#a0aa9d8d35792159dc9611802f6c190eb" title="model of Y - linear Gaussian">model</a>.<a class="code" href="classbdm_1_1mlnorm.html#a9af0714b7b29ab1162ebc3291b7c4a43" title="access function">_R</a>();
-<a name="l00381"></a>00381                         <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1ArxDS.html#a064e5d3f2dc0b39459c7ca53d05223e1" title="options">opt_L_theta</a> ) {
-<a name="l00382"></a>00382                                 <a class="code" href="classbdm_1_1ArxDS.html#ae13e5ffdfe9d896089310b0fc54e0c85" title="loggers">L_theta</a> = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">&quot;{th }&quot;</span>, vec_1 ( A.rows() * A.cols() ) ), <span class="stringliteral">&quot;t&quot;</span> );
-<a name="l00383"></a>00383                         }
-<a name="l00384"></a>00384                         <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1ArxDS.html#a064e5d3f2dc0b39459c7ca53d05223e1" title="options">opt_L_theta</a> ) {
-<a name="l00385"></a>00385                                 L_R = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( <a class="code" href="classbdm_1_1RV.html" title="Class representing variables, most often random variables.">RV</a> ( <span class="stringliteral">&quot;{R }&quot;</span>, vec_1 ( R.rows() * R.cols() ) ), <span class="stringliteral">&quot;r&quot;</span> );
-<a name="l00386"></a>00386                         }
-<a name="l00387"></a>00387                 }
-<a name="l00388"></a><a class="code" href="classbdm_1_1ArxDS.html#a4128f5dc3a04063d62fc7e35635aeb90">00388</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1ArxDS.html#a4128f5dc3a04063d62fc7e35635aeb90" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
-<a name="l00389"></a>00389                         <span class="comment">//DS::logit ( L );</span>
-<a name="l00390"></a>00390                         L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1DS.html#ab4b7bdb9d98a11ab587aa0ad803bb867" title="Remember its own index in Logger L.">L_dt</a>, <a class="code" href="classbdm_1_1ArxDS.html#aa11a3f3fbeea1d17b66b073017964597" title="History, ordered as .">H</a>.left ( dt_size ) );
-<a name="l00391"></a>00391                         L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( L_ut, <a class="code" href="classbdm_1_1ArxDS.html#a392b87be85675cb3d55fa4953d671bb5" title="(future) input">U</a> );
-<a name="l00392"></a>00392 
-<a name="l00393"></a>00393                         <span class="keyword">const</span> mat &amp;A = <a class="code" href="classbdm_1_1ArxDS.html#a0aa9d8d35792159dc9611802f6c190eb" title="model of Y - linear Gaussian">model</a>.<a class="code" href="classbdm_1_1mlnorm.html#a55e1bd7fa70b852bd7fe50ce72fb8f23" title="access function">_A</a>();
-<a name="l00394"></a>00394                         <span class="keyword">const</span> mat R = <a class="code" href="classbdm_1_1ArxDS.html#a0aa9d8d35792159dc9611802f6c190eb" title="model of Y - linear Gaussian">model</a>.<a class="code" href="classbdm_1_1mlnorm.html#a9af0714b7b29ab1162ebc3291b7c4a43" title="access function">_R</a>();
-<a name="l00395"></a>00395                         <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1ArxDS.html#a064e5d3f2dc0b39459c7ca53d05223e1" title="options">opt_L_theta</a> ) {
-<a name="l00396"></a>00396                                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1ArxDS.html#ae13e5ffdfe9d896089310b0fc54e0c85" title="loggers">L_theta</a>, vec ( A._data(), A.rows() *A.cols() ) );
-<a name="l00397"></a>00397                         };
-<a name="l00398"></a>00398                         <span class="keywordflow">if</span> ( <a class="code" href="classbdm_1_1ArxDS.html#a064e5d3f2dc0b39459c7ca53d05223e1" title="options">opt_L_theta</a> ) {
-<a name="l00399"></a>00399                                 L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( L_R, vec ( R._data(), R.rows() *R.rows() ) );
-<a name="l00400"></a>00400                         };
-<a name="l00401"></a>00401                 }
-<a name="l00402"></a>00402 
-<a name="l00403"></a>00403                 <span class="comment">// TODO dokumentace - aktualizovat</span>
-<a name="l00435"></a>00435 <span class="comment"></span>                <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1ArxDS.html#a9b109ee7bba9774057b107383b6ecc24">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> );
-<a name="l00436"></a>00436 
-<a name="l00437"></a>00437                 <span class="comment">// TODO dodelat void to_setting( Setting &amp;set ) const;</span>
-<a name="l00438"></a>00438 };
-<a name="l00439"></a>00439 
-<a name="l00440"></a>00440 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( ArxDS );
-<a name="l00441"></a>00441 SHAREDPTR ( ArxDS );
-<a name="l00442"></a>00442 
-<a name="l00443"></a><a class="code" href="classbdm_1_1stateDS.html">00443</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1stateDS.html">stateDS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> {
-<a name="l00444"></a>00444         <span class="keyword">private</span>:
-<a name="l00446"></a>00446                 <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;mpdf&gt;</a> IM;
-<a name="l00447"></a>00447 
-<a name="l00449"></a>00449                 <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;mpdf&gt;</a> OM;
-<a name="l00450"></a>00450 
-<a name="l00451"></a>00451         <span class="keyword">protected</span>:
-<a name="l00453"></a><a class="code" href="classbdm_1_1stateDS.html#a839bd9979c0aa407bc575e536f0a9918">00453</a>                 vec <a class="code" href="classbdm_1_1stateDS.html#a839bd9979c0aa407bc575e536f0a9918" title="result storage">dt</a>;
-<a name="l00455"></a><a class="code" href="classbdm_1_1stateDS.html#ac055a609e44f77300aa86e903df4f088">00455</a>                 vec <a class="code" href="classbdm_1_1stateDS.html#ac055a609e44f77300aa86e903df4f088" title="state storage">xt</a>;
-<a name="l00457"></a><a class="code" href="classbdm_1_1stateDS.html#aabbdb3dcf67a06f5a9003828819bafbf">00457</a>                 vec <a class="code" href="classbdm_1_1stateDS.html#aabbdb3dcf67a06f5a9003828819bafbf" title="input storage">ut</a>;
-<a name="l00459"></a><a class="code" href="classbdm_1_1stateDS.html#a16cdcdd5c878ebeebe7cad71c87f77ca">00459</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1stateDS.html#a16cdcdd5c878ebeebe7cad71c87f77ca" title="Logger.">L_xt</a>;
-<a name="l00460"></a>00460 
-<a name="l00461"></a>00461         <span class="keyword">public</span>:
-<a name="l00462"></a><a class="code" href="classbdm_1_1stateDS.html#a5c9f4a93313f69adfa97375b58c0a6c2">00462</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1stateDS.html#a5c9f4a93313f69adfa97375b58c0a6c2" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt0 ) {
-<a name="l00463"></a>00463                         dt0 = <a class="code" href="classbdm_1_1stateDS.html#a839bd9979c0aa407bc575e536f0a9918" title="result storage">dt</a>;
-<a name="l00464"></a>00464                 }
-<a name="l00465"></a>00465 
-<a name="l00466"></a><a class="code" href="classbdm_1_1stateDS.html#ad61e149db7c7b3a1289ac82f37c97700">00466</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1stateDS.html#ad61e149db7c7b3a1289ac82f37c97700" title="Returns data records at indeces.">getdata</a> ( vec &amp;dt0, <span class="keyword">const</span> ivec &amp;indices ) {
-<a name="l00467"></a>00467                         dt0 = <a class="code" href="classbdm_1_1stateDS.html#a839bd9979c0aa407bc575e536f0a9918" title="result storage">dt</a> ( indices );
-<a name="l00468"></a>00468                 }
-<a name="l00469"></a>00469 
-<a name="l00470"></a>00470                 <a class="code" href="classbdm_1_1stateDS.html">stateDS</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;mpdf&gt;</a> &amp;IM0, <span class="keyword">const</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;mpdf&gt;</a> &amp;OM0, <span class="keywordtype">int</span> usize ) : IM ( IM0 ), OM ( OM0 ),
-<a name="l00471"></a>00471                                 <a class="code" href="classbdm_1_1stateDS.html#a839bd9979c0aa407bc575e536f0a9918" title="result storage">dt</a> ( OM0-&gt;dimension() ), <a class="code" href="classbdm_1_1stateDS.html#ac055a609e44f77300aa86e903df4f088" title="state storage">xt</a> ( IM0-&gt;dimension() ),
-<a name="l00472"></a>00472                                 <a class="code" href="classbdm_1_1stateDS.html#aabbdb3dcf67a06f5a9003828819bafbf" title="input storage">ut</a> ( usize ), <a class="code" href="classbdm_1_1stateDS.html#a16cdcdd5c878ebeebe7cad71c87f77ca" title="Logger.">L_xt</a> ( 0 ) { }
-<a name="l00473"></a>00473 
-<a name="l00474"></a>00474                 stateDS() : <a class="code" href="classbdm_1_1stateDS.html#a16cdcdd5c878ebeebe7cad71c87f77ca" title="Logger.">L_xt</a> ( 0 ) { }
-<a name="l00475"></a>00475 
-<a name="l00476"></a><a class="code" href="classbdm_1_1stateDS.html#a1e98f3e362e35245d565c2508527ae14">00476</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1stateDS.html#a1e98f3e362e35245d565c2508527ae14" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>() {
-<a name="l00477"></a>00477                         <a class="code" href="classbdm_1_1stateDS.html#ac055a609e44f77300aa86e903df4f088" title="state storage">xt</a> = IM-&gt;samplecond ( concat ( <a class="code" href="classbdm_1_1stateDS.html#ac055a609e44f77300aa86e903df4f088" title="state storage">xt</a>, <a class="code" href="classbdm_1_1stateDS.html#aabbdb3dcf67a06f5a9003828819bafbf" title="input storage">ut</a> ) );
-<a name="l00478"></a>00478                         <a class="code" href="classbdm_1_1stateDS.html#a839bd9979c0aa407bc575e536f0a9918" title="result storage">dt</a> = OM-&gt;samplecond ( concat ( <a class="code" href="classbdm_1_1stateDS.html#ac055a609e44f77300aa86e903df4f088" title="state storage">xt</a>, <a class="code" href="classbdm_1_1stateDS.html#aabbdb3dcf67a06f5a9003828819bafbf" title="input storage">ut</a> ) );
-<a name="l00479"></a>00479                 }
-<a name="l00480"></a>00480 
-<a name="l00481"></a><a class="code" href="classbdm_1_1stateDS.html#ac78f44b484128e73fe31ab6d118b5440">00481</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1stateDS.html#ac78f44b484128e73fe31ab6d118b5440" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
-<a name="l00482"></a>00482                         <a class="code" href="classbdm_1_1stateDS.html#ac78f44b484128e73fe31ab6d118b5440" title="Register DS for logging into logger L.">DS::log_add</a> ( L );
-<a name="l00483"></a>00483                         <a class="code" href="classbdm_1_1stateDS.html#a16cdcdd5c878ebeebe7cad71c87f77ca" title="Logger.">L_xt</a> = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7" title="returns an identifier which will be later needed for calling the logit() function...">add</a> ( IM-&gt;_rv(), <span class="stringliteral">&quot;true&quot;</span> );
-<a name="l00484"></a>00484                 }
-<a name="l00485"></a><a class="code" href="classbdm_1_1stateDS.html#a3850341d9584df6b60cb05eeea6b38f4">00485</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1stateDS.html#a3850341d9584df6b60cb05eeea6b38f4" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
-<a name="l00486"></a>00486                         <a class="code" href="classbdm_1_1stateDS.html#a3850341d9584df6b60cb05eeea6b38f4" title="Register DS for logging into logger L.">DS::logit</a> ( L );
-<a name="l00487"></a>00487                         L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1stateDS.html#a16cdcdd5c878ebeebe7cad71c87f77ca" title="Logger.">L_xt</a>, <a class="code" href="classbdm_1_1stateDS.html#ac055a609e44f77300aa86e903df4f088" title="state storage">xt</a> );
-<a name="l00488"></a>00488                 }
-<a name="l00489"></a>00489 
-<a name="l00519"></a>00519                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1stateDS.html#aa3792e751ff4d3f66f8feec16506197b">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> );
-<a name="l00520"></a>00520 
-<a name="l00521"></a>00521                 <span class="comment">// TODO dodelat void to_setting( Setting &amp;set ) const;</span>
-<a name="l00522"></a>00522 
-<a name="l00523"></a>00523 };
-<a name="l00524"></a>00524 
-<a name="l00525"></a>00525 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( stateDS );
-<a name="l00526"></a>00526 SHAREDPTR ( stateDS );
-<a name="l00527"></a>00527 
-<a name="l00528"></a>00528 }; <span class="comment">//namespace</span>
-<a name="l00529"></a>00529 
-<a name="l00530"></a>00530 <span class="preprocessor">#endif // DS_H</span>
+<a name="l00300"></a>00300 
+<a name="l00301"></a>00301 
+<a name="l00302"></a>00302 <span class="comment">// ARXDs - DELETED</span>
+<a name="l00303"></a>00303 
+<a name="l00305"></a><a class="code" href="classbdm_1_1stateDS.html">00305</a> <span class="keyword">class </span><a class="code" href="classbdm_1_1stateDS.html" title="State-space data source simulating two densities.">stateDS</a> : <span class="keyword">public</span> <a class="code" href="classbdm_1_1DS.html" title="Abstract class for discrete-time sources of data.">DS</a> {
+<a name="l00306"></a>00306         <span class="keyword">private</span>:
+<a name="l00308"></a>00308                 <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;mpdf&gt;</a> IM;
+<a name="l00309"></a>00309 
+<a name="l00311"></a>00311                 <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;mpdf&gt;</a> OM;
+<a name="l00312"></a>00312 
+<a name="l00313"></a>00313         <span class="keyword">protected</span>:
+<a name="l00315"></a><a class="code" href="classbdm_1_1stateDS.html#a839bd9979c0aa407bc575e536f0a9918">00315</a>                 vec <a class="code" href="classbdm_1_1stateDS.html#a839bd9979c0aa407bc575e536f0a9918" title="result storage">dt</a>;
+<a name="l00317"></a><a class="code" href="classbdm_1_1stateDS.html#ac055a609e44f77300aa86e903df4f088">00317</a>                 vec <a class="code" href="classbdm_1_1stateDS.html#ac055a609e44f77300aa86e903df4f088" title="state storage">xt</a>;
+<a name="l00319"></a><a class="code" href="classbdm_1_1stateDS.html#aabbdb3dcf67a06f5a9003828819bafbf">00319</a>                 vec <a class="code" href="classbdm_1_1stateDS.html#aabbdb3dcf67a06f5a9003828819bafbf" title="input storage">ut</a>;
+<a name="l00321"></a><a class="code" href="classbdm_1_1stateDS.html#a16cdcdd5c878ebeebe7cad71c87f77ca">00321</a>                 <span class="keywordtype">int</span> <a class="code" href="classbdm_1_1stateDS.html#a16cdcdd5c878ebeebe7cad71c87f77ca" title="Logger.">L_xt</a>;
+<a name="l00322"></a>00322 
+<a name="l00323"></a>00323         <span class="keyword">public</span>:
+<a name="l00324"></a><a class="code" href="classbdm_1_1stateDS.html#a5c9f4a93313f69adfa97375b58c0a6c2">00324</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1stateDS.html#a5c9f4a93313f69adfa97375b58c0a6c2" title="Returns full vector of observed data=[output, input].">getdata</a> ( vec &amp;dt0 ) {
+<a name="l00325"></a>00325                         dt0 = <a class="code" href="classbdm_1_1stateDS.html#a839bd9979c0aa407bc575e536f0a9918" title="result storage">dt</a>;
+<a name="l00326"></a>00326                 }
+<a name="l00327"></a>00327 
+<a name="l00328"></a><a class="code" href="classbdm_1_1stateDS.html#ad61e149db7c7b3a1289ac82f37c97700">00328</a>                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1stateDS.html#ad61e149db7c7b3a1289ac82f37c97700" title="Returns data records at indeces.">getdata</a> ( vec &amp;dt0, <span class="keyword">const</span> ivec &amp;indices ) {
+<a name="l00329"></a>00329                         dt0 = <a class="code" href="classbdm_1_1stateDS.html#a839bd9979c0aa407bc575e536f0a9918" title="result storage">dt</a> ( indices );
+<a name="l00330"></a>00330                 }
+<a name="l00332"></a><a class="code" href="classbdm_1_1stateDS.html#ace1eec3f47d8d1b8ad9747482a4ca598">00332</a>                 <a class="code" href="classbdm_1_1stateDS.html" title="State-space data source simulating two densities.">stateDS</a> ( <span class="keyword">const</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;mpdf&gt;</a> &amp;IM0, <span class="keyword">const</span> <a class="code" href="classbdm_1_1shared__ptr.html">shared_ptr&lt;mpdf&gt;</a> &amp;OM0, <span class="keywordtype">int</span> usize ) : IM ( IM0 ), OM ( OM0 ),
+<a name="l00333"></a>00333                                 <a class="code" href="classbdm_1_1stateDS.html#a839bd9979c0aa407bc575e536f0a9918" title="result storage">dt</a> ( OM0-&gt;dimension() ), <a class="code" href="classbdm_1_1stateDS.html#ac055a609e44f77300aa86e903df4f088" title="state storage">xt</a> ( IM0-&gt;dimension() ),
+<a name="l00334"></a>00334                                 <a class="code" href="classbdm_1_1stateDS.html#aabbdb3dcf67a06f5a9003828819bafbf" title="input storage">ut</a> ( usize ), <a class="code" href="classbdm_1_1stateDS.html#a16cdcdd5c878ebeebe7cad71c87f77ca" title="Logger.">L_xt</a> ( 0 ) { }
+<a name="l00335"></a>00335 
+<a name="l00336"></a>00336                 <a class="code" href="classbdm_1_1stateDS.html" title="State-space data source simulating two densities.">stateDS</a>() : <a class="code" href="classbdm_1_1stateDS.html#a16cdcdd5c878ebeebe7cad71c87f77ca" title="Logger.">L_xt</a> ( 0 ) { }
+<a name="l00337"></a>00337 
+<a name="l00338"></a><a class="code" href="classbdm_1_1stateDS.html#a1e98f3e362e35245d565c2508527ae14">00338</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1stateDS.html#a1e98f3e362e35245d565c2508527ae14" title="Moves from  to , i.e. perfroms the actions and reads response of the system.">step</a>() {
+<a name="l00339"></a>00339                         <a class="code" href="classbdm_1_1stateDS.html#ac055a609e44f77300aa86e903df4f088" title="state storage">xt</a> = IM-&gt;samplecond ( concat ( <a class="code" href="classbdm_1_1stateDS.html#ac055a609e44f77300aa86e903df4f088" title="state storage">xt</a>, <a class="code" href="classbdm_1_1stateDS.html#aabbdb3dcf67a06f5a9003828819bafbf" title="input storage">ut</a> ) );
+<a name="l00340"></a>00340                         <a class="code" href="classbdm_1_1stateDS.html#a839bd9979c0aa407bc575e536f0a9918" title="result storage">dt</a> = OM-&gt;samplecond ( concat ( <a class="code" href="classbdm_1_1stateDS.html#ac055a609e44f77300aa86e903df4f088" title="state storage">xt</a>, <a class="code" href="classbdm_1_1stateDS.html#aabbdb3dcf67a06f5a9003828819bafbf" title="input storage">ut</a> ) );
+<a name="l00341"></a>00341                 }
+<a name="l00342"></a>00342 
+<a name="l00343"></a><a class="code" href="classbdm_1_1stateDS.html#ac78f44b484128e73fe31ab6d118b5440">00343</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1stateDS.html#ac78f44b484128e73fe31ab6d118b5440" title="Register DS for logging into logger L.">log_add</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
+<a name="l00344"></a>00344                         <a class="code" href="classbdm_1_1stateDS.html#ac78f44b484128e73fe31ab6d118b5440" title="Register DS for logging into logger L.">DS::log_add</a> ( L );
+<a name="l00345"></a>00345                         <a class="code" href="classbdm_1_1stateDS.html#a16cdcdd5c878ebeebe7cad71c87f77ca" title="Logger.">L_xt</a> = L.<a class="code" href="classbdm_1_1logger.html#a47aa3b098a81d02a8ffaea2c9fa09ac7">add</a> ( IM-&gt;_rv(), <span class="stringliteral">&quot;true&quot;</span> );
+<a name="l00346"></a>00346                 }
+<a name="l00347"></a><a class="code" href="classbdm_1_1stateDS.html#a3850341d9584df6b60cb05eeea6b38f4">00347</a>                 <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1stateDS.html#a3850341d9584df6b60cb05eeea6b38f4" title="Register DS for logging into logger L.">logit</a> ( <a class="code" href="classbdm_1_1logger.html" title="Class for storing results (and semi-results) of an experiment.">logger</a> &amp;L ) {
+<a name="l00348"></a>00348                         <a class="code" href="classbdm_1_1stateDS.html#a3850341d9584df6b60cb05eeea6b38f4" title="Register DS for logging into logger L.">DS::logit</a> ( L );
+<a name="l00349"></a>00349                         L.<a class="code" href="classbdm_1_1logger.html#ae30f695619931b3c372ab280e452d309" title="log this vector">logit</a> ( <a class="code" href="classbdm_1_1stateDS.html#a16cdcdd5c878ebeebe7cad71c87f77ca" title="Logger.">L_xt</a>, <a class="code" href="classbdm_1_1stateDS.html#ac055a609e44f77300aa86e903df4f088" title="state storage">xt</a> );
+<a name="l00350"></a>00350                 }
+<a name="l00351"></a>00351 
+<a name="l00381"></a>00381                 <span class="keywordtype">void</span> <a class="code" href="classbdm_1_1stateDS.html#aa3792e751ff4d3f66f8feec16506197b">from_setting</a> ( <span class="keyword">const</span> Setting &amp;<span class="keyword">set</span> );
+<a name="l00382"></a>00382 
+<a name="l00383"></a>00383                 <span class="comment">// TODO dodelat void to_setting( Setting &amp;set ) const;</span>
+<a name="l00384"></a>00384 
+<a name="l00385"></a>00385 };
+<a name="l00386"></a>00386 
+<a name="l00387"></a>00387 <a class="code" href="user__info_8h.html#a4f9de2f17e844047726487b99def99c6" title="Macro for registration of class into map of user-infos, registered class is scriptable...">UIREGISTER</a> ( stateDS );
+<a name="l00388"></a>00388 SHAREDPTR ( stateDS );
+<a name="l00389"></a>00389 
+<a name="l00390"></a>00390 }; <span class="comment">//namespace</span>
+<a name="l00391"></a>00391 
+<a name="l00392"></a>00392 <span class="preprocessor">#endif // DS_H</span>
 </pre></div></div>
-<hr size="1"/><address style="text-align: right;"><small>Generated on Mon Oct 12 19:37:19 2009 for mixpp by&nbsp;
+<hr size="1"/><address style="text-align: right;"><small>Generated on Thu Oct 15 00:07:48 2009 for mixpp by&nbsp;
 <a href="http://www.doxygen.org/index.html">
 <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>
